Protein of unknown function, DUF604
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G11350 AT4G11350 AT4G23490 AT5G41460 |
| fragaria_vesca | FvH4_5g02990 FvH4_5g02990 |
| malus_domestica | MD00G1086500.v1.1 MD06G1088800.v1.1 |
| prunus_persica | Prupe.5G104700_v2.0.a1 |
| pyrus_communis | pycom06g08470 pycom14g10430 |
| rosa_chinensis | RchiOBHm_Chr7g0196881 RchiOBHm_Chr7g0196891 |
| rosa_laevigata | RLG00000003981 |
| rosa_multiflora | Rmu_co8224972.1_g000001 Rmu_co8340915.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00258880 |
| rosa_rugosa | Rorug07G0036400 |
| rosa_samantha | Rh7AG160900 Rh7BG163100 Rh7CG169200 Rh7DG162500 |
| rosa_wichuraiana | Rw7G014070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 644, 665 |
| AatII | GACGTC | 3 cut(s) | 210, 348, 615 |
| AccB1I | GGYRCC | 1 cut(s) | 982 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 387 |
| AccBSI | CCGCTC | 2 cut(s) | 499, 555 |
| AccI | GTMKAC | 2 cut(s) | 162, 210 |
| AccII | CGCG | 5 cut(s) | 192, 374, 441, 574, 672 |
| AccIII | TCCGGA | 2 cut(s) | 564, 678 |
| AclI | AACGTT | 3 cut(s) | 841, 1035, 1220 |
| AclWI | GGATC | 3 cut(s) | 54, 575, 584 |
| AcoI | YGGCCR | 4 cut(s) | 378, 468, 801, 888 |
| AcsI | RAATTY | 1 cut(s) | 1170 |
| AcuI | CTGAAG | 1 cut(s) | 1040 |
| AcyI | GRCGYC | 3 cut(s) | 207, 345, 612 |
| AdeI | CACNNNGTG | 1 cut(s) | 979 |
| AfaI | GTAC | 6 cut(s) | 422, 533, 701, 755, 767, 857 |
| AflIII | ACRYGT | 1 cut(s) | 939 |
| AgsI | TTSAA | 1 cut(s) | 1049 |
| AjiI | CACGTC | 2 cut(s) | 186, 940 |
| AjnI | CCWGG | 2 cut(s) | 79, 85 |
| AluBI | AGCT | 9 cut(s) | 60, 175, 385, 405, 415, 792, 1063, 1081, 1134 |
| AluI | AGCT | 9 cut(s) | 60, 175, 385, 405, 415, 792, 1063, 1081, 1134 |
| Alw21I | GWGCWC | 1 cut(s) | 62 |
| Alw26I | GTCTC | 3 cut(s) | 148, 184, 586 |
| AlwI | GGATC | 3 cut(s) | 54, 575, 584 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 307 |
| Ama87I | CYCGRG | 3 cut(s) | 102, 1041, 1194 |
| Aor13HI | TCCGGA | 2 cut(s) | 564, 678 |
| AoxI | GGCC | 9 cut(s) | 378, 390, 468, 547, 601, 801, 807, 879, 888 |
| ApaI | GGGCCC | 1 cut(s) | 394 |
| ApeKI | GCWGC | 5 cut(s) | 9, 477, 592, 968, 1060 |
| ApoI | RAATTY | 1 cut(s) | 1170 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 743, 953 |
| AspLEI | GCGC | 2 cut(s) | 194, 441 |
| AspS9I | GGNCC | 8 cut(s) | 83, 390, 391, 457, 547, 601, 808, 1069 |
| AsuC2I | CCSGG | 6 cut(s) | 461, 523, 849, 977, 1195, 1196 |
| AsuHPI | GGTGA | 5 cut(s) | 232, 646, 920, 995, 1182 |
| AvaI | CYCGRG | 3 cut(s) | 102, 1041, 1194 |
| AvaII | GGWCC | 3 cut(s) | 83, 457, 1069 |
| BaeGI | GKGCMC | 1 cut(s) | 394 |
| BalI | TGGCCA | 2 cut(s) | 470, 803 |
| BanI | GGYRCC | 1 cut(s) | 982 |
| BanII | GRGCYC | 4 cut(s) | 62, 394, 492, 1023 |
| BbsI | GAAGAC | 1 cut(s) | 640 |
| Bbv12I | GWGCWC | 1 cut(s) | 62 |
| BbvI | GCAGC | 5 cut(s) | 21, 489, 579, 980, 1072 |
| BccI | CCATC | 3 cut(s) | 569, 1031, 1195 |
| BceAI | ACGGC | 3 cut(s) | 772, 784, 874 |
| BciT130I | CCWGG | 2 cut(s) | 81, 87 |
| BcnI | CCSGG | 6 cut(s) | 461, 523, 849, 977, 1195, 1196 |
| BcoDI | GTCTC | 3 cut(s) | 148, 184, 586 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 377, 887 |
| BmcAI | AGTACT | 1 cut(s) | 701 |
| Bme1390I | CCNGG | 8 cut(s) | 81, 87, 461, 523, 849, 977, 1195, 1196 |
| Bme18I | GGWCC | 3 cut(s) | 83, 457, 1069 |
| BmeT110I | CYCGRG | 3 cut(s) | 102, 1041, 1194 |
| BmgBI | CACGTC | 2 cut(s) | 186, 940 |
| BmgT120I | GGNCC | 8 cut(s) | 83, 390, 391, 457, 547, 601, 808, 1069 |
| BmrFI | CCNGG | 8 cut(s) | 81, 87, 461, 523, 849, 977, 1195, 1196 |
| BmrI | ACTGGG | 2 cut(s) | 691, 1067 |
| BmsI | GCATC | 2 cut(s) | 42, 1009 |
| BmuI | ACTGGG | 2 cut(s) | 691, 1067 |
| BpiI | GAAGAC | 1 cut(s) | 640 |
| Bpu10I | CCTNAGC | 1 cut(s) | 812 |
| BpuEI | CTTGAG | 3 cut(s) | 155, 485, 590 |
| BpuMI | CCSGG | 6 cut(s) | 461, 523, 849, 977, 1195, 1196 |
| BsaHI | GRCGYC | 3 cut(s) | 207, 345, 612 |
| BsaJI | CCNNGG | 5 cut(s) | 460, 804, 987, 1193, 1194 |
| BsaWI | WCCGGW | 3 cut(s) | 319, 564, 678 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 21, 51, 206, 236, 698, 728 |
| Bse1I | ACTGG | 3 cut(s) | 697, 931, 1073 |
| Bse3DI | GCAATG | 2 cut(s) | 366, 995 |
| BseAI | TCCGGA | 2 cut(s) | 564, 678 |
| BseBI | CCWGG | 2 cut(s) | 81, 87 |
| BseDI | CCNNGG | 5 cut(s) | 460, 804, 987, 1193, 1194 |
| BseGI | GGATG | 2 cut(s) | 132, 561 |
| BseMI | GCAATG | 2 cut(s) | 366, 995 |
| BseMII | CTCAG | 1 cut(s) | 1101 |
| BseNI | ACTGG | 3 cut(s) | 697, 931, 1073 |
| BseRI | GAGGAG | 3 cut(s) | 90, 110, 1194 |
| BseSI | GKGCMC | 1 cut(s) | 394 |
| BseXI | GCAGC | 5 cut(s) | 21, 489, 579, 980, 1072 |
| Bsh1236I | CGCG | 5 cut(s) | 192, 374, 441, 574, 672 |
| Bsh1285I | CGRYCG | 1 cut(s) | 871 |
| BshFI | GGCC | 9 cut(s) | 380, 392, 470, 549, 603, 803, 809, 881, 890 |
| BshNI | GGYRCC | 1 cut(s) | 982 |
| BsiEI | CGRYCG | 1 cut(s) | 871 |
| BsiHKAI | GWGCWC | 1 cut(s) | 62 |
| BsiHKCI | CYCGRG | 3 cut(s) | 102, 1041, 1194 |
| BsiWI | CGTACG | 2 cut(s) | 753, 765 |
| BslFI | GGGAC | 1 cut(s) | 1055 |
| BsmAI | GTCTC | 3 cut(s) | 148, 184, 586 |
| BsmBI | CGTCTC | 3 cut(s) | 148, 184, 586 |
| BsmFI | GGGAC | 1 cut(s) | 1055 |
| BsmI | GAATGC | 1 cut(s) | 879 |
| BsnI | GGCC | 9 cut(s) | 380, 392, 470, 549, 603, 803, 809, 881, 890 |
| BsoBI | CYCGRG | 3 cut(s) | 102, 1041, 1194 |
| Bsp120I | GGGCCC | 1 cut(s) | 390 |
| Bsp1286I | GDGCHC | 4 cut(s) | 62, 394, 492, 1023 |
| Bsp13I | TCCGGA | 2 cut(s) | 564, 678 |
| Bsp143I | GATC | 4 cut(s) | 46, 289, 567, 576 |
| BspANI | GGCC | 9 cut(s) | 380, 392, 470, 549, 603, 803, 809, 881, 890 |
| BspCNI | CTCAG | 1 cut(s) | 1100 |
| BspEI | TCCGGA | 2 cut(s) | 564, 678 |
| BspFNI | CGCG | 5 cut(s) | 192, 374, 441, 574, 672 |
| BspPI | GGATC | 3 cut(s) | 54, 575, 584 |
| BspT107I | GGYRCC | 1 cut(s) | 982 |
| BsrBI | CCGCTC | 2 cut(s) | 499, 555 |
| BsrDI | GCAATG | 2 cut(s) | 366, 995 |
| BsrI | ACTGG | 3 cut(s) | 697, 931, 1073 |
| BssECI | CCNNGG | 5 cut(s) | 460, 804, 987, 1193, 1194 |
| BssMI | GATC | 4 cut(s) | 46, 289, 567, 576 |
| BssNI | GRCGYC | 3 cut(s) | 207, 345, 612 |
| BssT1I | CCWWGG | 2 cut(s) | 804, 987 |
| Bst2UI | CCWGG | 2 cut(s) | 81, 87 |
| Bst4CI | ACNGT | 1 cut(s) | 646 |
| Bst6I | CTCTTC | 1 cut(s) | 143 |
| BstACI | GRCGYC | 3 cut(s) | 207, 345, 612 |
| BstC8I | GCNNGC | 3 cut(s) | 199, 879, 883 |
| BstDEI | CTNAG | 2 cut(s) | 812, 1087 |
| BstF5I | GGATG | 2 cut(s) | 132, 561 |
| BstFNI | CGCG | 5 cut(s) | 192, 374, 441, 574, 672 |
| BstHHI | GCGC | 2 cut(s) | 194, 441 |
| BstKTI | GATC | 4 cut(s) | 49, 292, 570, 579 |
| BstMAI | GTCTC | 3 cut(s) | 148, 184, 586 |
| BstMBI | GATC | 4 cut(s) | 46, 289, 567, 576 |
| BstMCI | CGRYCG | 1 cut(s) | 871 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 198, 377, 496, 777, 887 |
| BstNI | CCWGG | 2 cut(s) | 81, 87 |
| BstSCI | CCNGG | 8 cut(s) | 79, 85, 459, 521, 847, 975, 1193, 1194 |
| BstSLI | GKGCMC | 1 cut(s) | 394 |
| BstUI | CGCG | 5 cut(s) | 192, 374, 441, 574, 672 |
| BstV1I | GCAGC | 5 cut(s) | 21, 489, 579, 980, 1072 |
| BstV2I | GAAGAC | 1 cut(s) | 640 |
| BstX2I | RGATCY | 1 cut(s) | 567 |
| BstYI | RGATCY | 1 cut(s) | 567 |
| BsuRI | GGCC | 9 cut(s) | 380, 392, 470, 549, 603, 803, 809, 881, 890 |
| BtrI | CACGTC | 2 cut(s) | 186, 940 |
| BtsCI | GGATG | 2 cut(s) | 132, 561 |
| BtsIMutI | CAGTG | 1 cut(s) | 1080 |
| Cac8I | GCNNGC | 3 cut(s) | 199, 879, 883 |
| CaiI | CAGNNNCTG | 1 cut(s) | 307 |
| CfoI | GCGC | 2 cut(s) | 194, 441 |
| Cfr13I | GGNCC | 8 cut(s) | 83, 390, 391, 457, 547, 601, 808, 1069 |
| Cfr9I | CCCGGG | 1 cut(s) | 1194 |
| CseI | GACGC | 2 cut(s) | 363, 661 |
| CsiI | ACCWGGT | 1 cut(s) | 79 |
| Csp6I | GTAC | 6 cut(s) | 421, 532, 700, 754, 766, 856 |
| CviAII | CATG | 6 cut(s) | 436, 628, 760, 886, 1099, 1152 |
| CviQI | GTAC | 6 cut(s) | 421, 532, 700, 754, 766, 856 |
| DdeI | CTNAG | 2 cut(s) | 812, 1087 |
| DpnI | GATC | 4 cut(s) | 48, 291, 569, 578 |
| DpnII | GATC | 4 cut(s) | 46, 289, 567, 576 |
| DraIII | CACNNNGTG | 1 cut(s) | 979 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 644, 665 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 644, 665 |
| EaeI | YGGCCR | 4 cut(s) | 378, 468, 801, 888 |
| Eam1104I | CTCTTC | 1 cut(s) | 143 |
| EarI | CTCTTC | 1 cut(s) | 143 |
| EciI | GGCGGA | 1 cut(s) | 547 |
| Ecl136II | GAGCTC | 1 cut(s) | 60 |
| Eco130I | CCWWGG | 2 cut(s) | 804, 987 |
| Eco147I | AGGCCT | 1 cut(s) | 881 |
| Eco24I | GRGCYC | 4 cut(s) | 62, 394, 492, 1023 |
| Eco32I | GATATC | 1 cut(s) | 507 |
| Eco47I | GGWCC | 3 cut(s) | 83, 457, 1069 |
| Eco53kI | GAGCTC | 1 cut(s) | 60 |
| Eco57I | CTGAAG | 1 cut(s) | 1040 |
| Eco88I | CYCGRG | 3 cut(s) | 102, 1041, 1194 |
| EcoICRI | GAGCTC | 1 cut(s) | 60 |
| EcoO109I | RGGNCCY | 1 cut(s) | 808 |
| EcoRII | CCWGG | 2 cut(s) | 79, 85 |
| EcoRV | GATATC | 1 cut(s) | 507 |
| EcoT14I | CCWWGG | 2 cut(s) | 804, 987 |
| EcoT38I | GRGCYC | 4 cut(s) | 62, 394, 492, 1023 |
| ErhI | CCWWGG | 2 cut(s) | 804, 987 |
| Esp3I | CGTCTC | 3 cut(s) | 148, 184, 586 |
| FaeI | CATG | 6 cut(s) | 439, 631, 763, 889, 1102, 1155 |
| FaqI | GGGAC | 1 cut(s) | 1055 |
| FatI | CATG | 6 cut(s) | 435, 627, 759, 885, 1098, 1151 |
| FauI | CCCGC | 2 cut(s) | 239, 501 |
| FblI | GTMKAC | 2 cut(s) | 162, 210 |
| FokI | GGATG | 2 cut(s) | 119, 548 |
| FriOI | GRGCYC | 4 cut(s) | 62, 394, 492, 1023 |
| GlaI | GCGC | 2 cut(s) | 193, 440 |
| HaeIII | GGCC | 9 cut(s) | 380, 392, 470, 549, 603, 803, 809, 881, 890 |
| HgaI | GACGC | 2 cut(s) | 363, 661 |
| HhaI | GCGC | 2 cut(s) | 194, 441 |
| Hin1I | GRCGYC | 3 cut(s) | 207, 345, 612 |
| Hin1II | CATG | 6 cut(s) | 439, 631, 763, 889, 1102, 1155 |
| Hin6I | GCGC | 2 cut(s) | 192, 439 |
| HinP1I | GCGC | 2 cut(s) | 192, 439 |
| HincII | GTYRAC | 1 cut(s) | 211 |
| HindII | GTYRAC | 1 cut(s) | 211 |
| HinfI | GANTC | 7 cut(s) | 23, 304, 431, 725, 960, 1085, 1095 |
| HphI | GGTGA | 5 cut(s) | 232, 646, 920, 995, 1182 |
| Hpy166II | GTNNAC | 3 cut(s) | 163, 211, 534 |
| Hpy188I | TCNGA | 5 cut(s) | 51, 586, 724, 865, 959 |
| Hpy188III | TCNNGA | 5 cut(s) | 27, 502, 565, 679, 1215 |
| Hpy8I | GTNNAC | 3 cut(s) | 163, 211, 534 |
| Hpy99I | CGWCG | 9 cut(s) | 206, 209, 212, 215, 347, 379, 638, 641, 869 |
| HpyAV | CCTTC | 3 cut(s) | 229, 1064, 1221 |
| HpyCH4III | ACNGT | 1 cut(s) | 646 |
| HpyCH4IV | ACGT | 9 cut(s) | 185, 207, 279, 345, 612, 841, 939, 1035, 1220 |
| HpyCH4V | TGCA | 8 cut(s) | 736, 823, 834, 877, 885, 968, 1000, 1102 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 198, 377, 496, 777, 887 |
| HpyF3I | CTNAG | 2 cut(s) | 812, 1087 |
| HpySE526I | ACGT | 9 cut(s) | 185, 207, 279, 345, 612, 841, 939, 1035, 1220 |
| Hsp92I | GRCGYC | 3 cut(s) | 207, 345, 612 |
| Hsp92II | CATG | 6 cut(s) | 439, 631, 763, 889, 1102, 1155 |
| HspAI | GCGC | 2 cut(s) | 192, 439 |
| Kpn2I | TCCGGA | 2 cut(s) | 564, 678 |
| Kzo9I | GATC | 4 cut(s) | 46, 289, 567, 576 |
| LmnI | GCTCC | 8 cut(s) | 57, 65, 322, 328, 495, 560, 719, 866 |
| Lsp1109I | GCAGC | 5 cut(s) | 21, 489, 579, 980, 1072 |
| LweI | GCATC | 2 cut(s) | 42, 1009 |
| MabI | ACCWGGT | 1 cut(s) | 79 |
| MaeII | ACGT | 9 cut(s) | 185, 207, 279, 345, 612, 841, 939, 1035, 1220 |
| MaeIII | GTNAC | 5 cut(s) | 148, 186, 280, 991, 1036 |
| MalI | GATC | 4 cut(s) | 48, 291, 569, 578 |
| MbiI | CCGCTC | 2 cut(s) | 499, 555 |
| MboI | GATC | 4 cut(s) | 46, 289, 567, 576 |
| MboII | GAAGA | 5 cut(s) | 130, 299, 640, 736, 739 |
| MflI | RGATCY | 1 cut(s) | 567 |
| MhlI | GDGCHC | 4 cut(s) | 62, 394, 492, 1023 |
| MlsI | TGGCCA | 2 cut(s) | 470, 803 |
| MluCI | AATT | 1 cut(s) | 1170 |
| MluNI | TGGCCA | 2 cut(s) | 470, 803 |
| MlyI | GAGTC | 3 cut(s) | 425, 954, 1079 |
| MmeI | TCCRAC | 2 cut(s) | 702, 888 |
| Mox20I | TGGCCA | 2 cut(s) | 470, 803 |
| MroI | TCCGGA | 2 cut(s) | 564, 678 |
| MroXI | GAANNNNTTC | 2 cut(s) | 743, 953 |
| MscI | TGGCCA | 2 cut(s) | 470, 803 |
| MslI | CAYNNNNRTG | 2 cut(s) | 933, 1008 |
| Msp20I | TGGCCA | 2 cut(s) | 470, 803 |
| MspA1I | CMGCKG | 2 cut(s) | 480, 618 |
| MspR9I | CCNGG | 8 cut(s) | 81, 87, 461, 523, 849, 977, 1195, 1196 |
| Mva1269I | GAATGC | 1 cut(s) | 879 |
| MvaI | CCWGG | 2 cut(s) | 81, 87 |
| MvnI | CGCG | 5 cut(s) | 192, 374, 441, 574, 672 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 198, 377, 496, 777, 887 |
| NciI | CCSGG | 6 cut(s) | 461, 523, 849, 977, 1195, 1196 |
| NdeII | GATC | 4 cut(s) | 46, 289, 567, 576 |
| NlaIII | CATG | 6 cut(s) | 439, 631, 763, 889, 1102, 1155 |
| NmeAIII | GCCGAG | 1 cut(s) | 900 |
| NmuCI | GTSAC | 3 cut(s) | 148, 186, 280 |
| PaeR7I | CTCGAG | 1 cut(s) | 102 |
| PceI | AGGCCT | 1 cut(s) | 881 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 210, 630, 642, 864 |
| PctI | GAATGC | 1 cut(s) | 879 |
| PdmI | GAANNNNTTC | 2 cut(s) | 743, 953 |
| PfeI | GAWTC | 4 cut(s) | 23, 304, 725, 1095 |
| Pfl23II | CGTACG | 2 cut(s) | 753, 765 |
| PflFI | GACNNNGTC | 2 cut(s) | 206, 644 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 387 |
| PleI | GAGTC | 3 cut(s) | 425, 954, 1079 |
| PpsI | GAGTC | 3 cut(s) | 425, 954, 1079 |
| Psp124BI | GAGCTC | 1 cut(s) | 62 |
| Psp1406I | AACGTT | 3 cut(s) | 841, 1035, 1220 |
| Psp6I | CCWGG | 2 cut(s) | 79, 85 |
| PspGI | CCWGG | 2 cut(s) | 79, 85 |
| PspLI | CGTACG | 2 cut(s) | 753, 765 |
| PspOMI | GGGCCC | 1 cut(s) | 390 |
| PspPI | GGNCC | 8 cut(s) | 83, 390, 391, 457, 547, 601, 808, 1069 |
| PspXI | VCTCGAGB | 1 cut(s) | 102 |
| PstNI | CAGNNNCTG | 1 cut(s) | 307 |
| PsuI | RGATCY | 1 cut(s) | 567 |
| PsyI | GACNNNGTC | 2 cut(s) | 206, 644 |
| RsaI | GTAC | 6 cut(s) | 422, 533, 701, 755, 767, 857 |
| RsaNI | GTAC | 6 cut(s) | 421, 532, 700, 754, 766, 856 |
| RseI | CAYNNNNRTG | 2 cut(s) | 933, 1008 |
| SacI | GAGCTC | 1 cut(s) | 62 |
| SalI | GTCGAC | 1 cut(s) | 209 |
| Sau3AI | GATC | 4 cut(s) | 46, 289, 567, 576 |
| Sau96I | GGNCC | 8 cut(s) | 83, 390, 391, 457, 547, 601, 808, 1069 |
| ScaI | AGTACT | 1 cut(s) | 701 |
| SchI | GAGTC | 3 cut(s) | 425, 954, 1079 |
| ScrFI | CCNGG | 8 cut(s) | 81, 87, 461, 523, 849, 977, 1195, 1196 |
| SduI | GDGCHC | 4 cut(s) | 62, 394, 492, 1023 |
| SexAI | ACCWGGT | 1 cut(s) | 79 |
| SfaNI | GCATC | 2 cut(s) | 42, 1009 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 887 |
| Sfr274I | CTCGAG | 1 cut(s) | 102 |
| SgrDI | CGTCGACG | 1 cut(s) | 209 |
| SinI | GGWCC | 3 cut(s) | 83, 457, 1069 |
| SlaI | CTCGAG | 1 cut(s) | 102 |
| SmaI | CCCGGG | 1 cut(s) | 1196 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 933, 1008 |
| SmlI | CTYRAG | 4 cut(s) | 102, 170, 500, 605 |
| SmoI | CTYRAG | 4 cut(s) | 102, 170, 500, 605 |
| Sse9I | AATT | 1 cut(s) | 1170 |
| SseBI | AGGCCT | 1 cut(s) | 881 |
| SstI | GAGCTC | 1 cut(s) | 62 |
| StuI | AGGCCT | 1 cut(s) | 881 |
| StyD4I | CCNGG | 8 cut(s) | 79, 85, 459, 521, 847, 975, 1193, 1194 |
| StyI | CCWWGG | 2 cut(s) | 804, 987 |
| TaaI | ACNGT | 1 cut(s) | 646 |
| TaiI | ACGT | 9 cut(s) | 188, 210, 282, 348, 615, 844, 942, 1038, 1223 |
| TaqI | TCGA | 5 cut(s) | 103, 210, 292, 315, 1177 |
| TaqII | GACCGA | 1 cut(s) | 885 |
| TasI | AATT | 1 cut(s) | 1170 |
| TatI | WGTACW | 1 cut(s) | 699 |
| TfiI | GAWTC | 4 cut(s) | 23, 304, 725, 1095 |
| TscAI | CASTG | 1 cut(s) | 1080 |
| TseFI | GTSAC | 3 cut(s) | 148, 186, 280 |
| TseI | GCWGC | 5 cut(s) | 9, 477, 592, 968, 1060 |
| Tsp45I | GTSAC | 3 cut(s) | 148, 186, 280 |
| TspDTI | ATGAA | 3 cut(s) | 17, 640, 1140 |
| TspGWI | ACGGA | 3 cut(s) | 136, 299, 1135 |
| TspMI | CCCGGG | 1 cut(s) | 1194 |
| TspRI | CASTG | 1 cut(s) | 1080 |
| Tth111I | GACNNNGTC | 2 cut(s) | 206, 644 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 387 |
| VpaK11BI | GGWCC | 3 cut(s) | 83, 457, 1069 |
| XapI | RAATTY | 1 cut(s) | 1170 |
| XhoI | CTCGAG | 1 cut(s) | 102 |
| XmaI | CCCGGG | 1 cut(s) | 1194 |
| XmiI | GTMKAC | 2 cut(s) | 162, 210 |
| XmnI | GAANNNNTTC | 2 cut(s) | 743, 953 |
| ZraI | GACGTC | 3 cut(s) | 208, 346, 613 |
| ZrmI | AGTACT | 1 cut(s) | 701 |