Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8340915.1

Orthogroup ID

OG0008233

Physical Location & Seq

Genomic Coordinates Forward (+)

41 .. 821

Gene Structure 781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8340915.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

atggtggtacagtatgacgtgtatgggaacctattcggactccttgcagcacacccggtggcacccttggttacattgcatcaccttgatgtggttgagcccatctttcccaacgttacccgagttcaagcccttcagcagcttatggtcccagtgaagctggactcagcaggaatcatgcaacaatctatctgttatgacaagtcaaagagctggactatttccgtttcatggggctttgctgtccaaatttttcgaggagttttttcaccccgggagatggaaatgccttcccgaacgtttttgaactggtacagaagagcagatttcactgcatatgcattcaacacgcgtcctgttagccgaaacccttgccagaaaccttttgtgttttacttgtcaaaggcaaaattcaattctacaatgaatacgacattcagcgagtatgtccagcatcgcgcccctcatcccttgtgcaagtggaagatggctgatcctgctagatttgagaaagttgaggtctataagaagcctgaccctcagctgtggaatagatcgccgaggagaaattgctgcagggtcagaaacccgaaacagaagaaaggaaccatggtgatagatgttggtttatgtaaagagggcgagatcagtgaaatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF604

Protein Analysis

219

Amino Acids

25.35

Weight (kDa)

9.65

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11350 AT4G11350 AT4G23490 AT5G41460
fragaria_vesca	FvH4_5g02990 FvH4_5g02990
malus_domestica	MD00G1086500.v1.1 MD06G1088800.v1.1
prunus_persica	Prupe.5G104700_v2.0.a1
pyrus_communis	pycom06g08470 pycom14g10430
rosa_chinensis	RchiOBHm_Chr7g0196881 RchiOBHm_Chr7g0196891
rosa_laevigata	RLG00000003981
rosa_multiflora	Rmu_co8224972.1_g000001 Rmu_co8340915.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258880
rosa_rugosa	Rorug07G0036400
rosa_samantha	Rh7AG160900 Rh7BG163100 Rh7CG169200 Rh7DG162500
rosa_wichuraiana	Rw7G014070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	61
AccII	CGCG	2 cut(s)	352, 459
AclI	AACGTT	2 cut(s)	114, 299
AclWI	GGATC	1 cut(s)	488
AcsI	RAATTY	2 cut(s)	249, 410
AcuI	CTGAAG	1 cut(s)	119
AdeI	CACNNNGTG	1 cut(s)	58
AfaI	GTAC	2 cut(s)	9, 314
AfiI	CCNNNNNNNGG	3 cut(s)	91, 231, 280
AflIII	ACRYGT	2 cut(s)	18, 350
AgsI	TTSAA	4 cut(s)	128, 307, 346, 415
AjiI	CACGTC	1 cut(s)	19
AluBI	AGCT	4 cut(s)	142, 160, 213, 544
AluI	AGCT	4 cut(s)	142, 160, 213, 544
AlwI	GGATC	1 cut(s)	488
Ama87I	CYCGRG	2 cut(s)	120, 273
ApeKI	GCWGC	3 cut(s)	47, 139, 573
ApoI	RAATTY	2 cut(s)	249, 410
Asp700I	GAANNNNTTC	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	461
AspS9I	GGNCC	1 cut(s)	148
AsuC2I	CCSGG	3 cut(s)	56, 274, 275
AsuHPI	GGTGA	3 cut(s)	74, 261, 625
AvaI	CYCGRG	2 cut(s)	120, 273
AvaII	GGWCC	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	61
BanII	GRGCYC	1 cut(s)	102
BbvCI	CCTCAGC	1 cut(s)	540
BbvI	GCAGC	3 cut(s)	59, 151, 560
BccI	CCATC	3 cut(s)	110, 274, 481
BcgI	CGANNNNNNTGC	2 cut(s)	354, 388
BcnI	CCSGG	3 cut(s)	56, 274, 275
BfaI	CTAG	1 cut(s)	501
BfmI	CTRYAG	1 cut(s)	574
BisI	GCNGC	3 cut(s)	48, 140, 574
BlsI	GCNGC	3 cut(s)	49, 141, 575
Bme1390I	CCNGG	3 cut(s)	56, 274, 275
Bme18I	GGWCC	1 cut(s)	148
BmeT110I	CYCGRG	2 cut(s)	120, 273
BmgBI	CACGTC	1 cut(s)	19
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	4 cut(s)	29, 63, 150, 607
BmrFI	CCNGG	3 cut(s)	56, 274, 275
BmrI	ACTGGG	1 cut(s)	146
BmsI	GCATC	2 cut(s)	88, 463
BmuI	ACTGGG	1 cut(s)	146
Bpu10I	CCTNAGC	1 cut(s)	540
BpuMI	CCSGG	3 cut(s)	56, 274, 275
BsaJI	CCNNGG	5 cut(s)	66, 272, 273, 560, 609
Bsc4I	CCNNNNNNNGG	3 cut(s)	91, 231, 280
Bse1I	ACTGG	2 cut(s)	152, 314
Bse3DI	GCAATG	1 cut(s)	74
BseDI	CCNNGG	5 cut(s)	66, 272, 273, 560, 609
BseGI	GGATG	1 cut(s)	466
BseLI	CCNNNNNNNGG	3 cut(s)	91, 231, 280
BseMI	GCAATG	1 cut(s)	74
BseMII	CTCAG	2 cut(s)	180, 554
BseNI	ACTGG	2 cut(s)	152, 314
BseRI	GAGGAG	2 cut(s)	273, 577
BseXI	GCAGC	3 cut(s)	59, 151, 560
Bsh1236I	CGCG	2 cut(s)	352, 459
BshNI	GGYRCC	1 cut(s)	61
BsiHKCI	CYCGRG	2 cut(s)	120, 273
BsiSI	CCGG	2 cut(s)	56, 274
BslFI	GGGAC	1 cut(s)	134
BslI	CCNNNNNNNGG	3 cut(s)	91, 231, 280
BsmFI	GGGAC	1 cut(s)	134
BsmI	GAATGC	1 cut(s)	341
BsoBI	CYCGRG	2 cut(s)	120, 273
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	3 cut(s)	493, 554, 645
Bsp19I	CCATGG	1 cut(s)	609
BspCNI	CTCAG	2 cut(s)	179, 553
BspFNI	CGCG	2 cut(s)	352, 459
BspLI	GGNNCC	4 cut(s)	29, 63, 150, 607
BspMAI	CTGCAG	1 cut(s)	578
BspPI	GGATC	1 cut(s)	488
BspQI	GCTCTTC	1 cut(s)	313
BspT107I	GGYRCC	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	74
BsrI	ACTGG	2 cut(s)	152, 314
BssECI	CCNNGG	5 cut(s)	66, 272, 273, 560, 609
BssMI	GATC	3 cut(s)	493, 554, 645
BssT1I	CCWWGG	2 cut(s)	66, 609
Bst4CI	ACNGT	1 cut(s)	12
Bst6I	CTCTTC	1 cut(s)	313
BstDEI	CTNAG	2 cut(s)	166, 540
BstDSI	CCRYGG	1 cut(s)	609
BstF5I	GGATG	1 cut(s)	466
BstFNI	CGCG	2 cut(s)	352, 459
BstHHI	GCGC	1 cut(s)	461
BstKTI	GATC	3 cut(s)	496, 557, 648
BstMBI	GATC	3 cut(s)	493, 554, 645
BstMWI	GCNNNNNNNGC	1 cut(s)	497
BstSCI	CCNGG	3 cut(s)	54, 272, 273
BstSFI	CTRYAG	1 cut(s)	574
BstUI	CGCG	2 cut(s)	352, 459
BstV1I	GCAGC	3 cut(s)	59, 151, 560
BtgI	CCRYGG	1 cut(s)	609
BtgZI	GCGATG	1 cut(s)	440
BtrI	CACGTC	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	466
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	3 cut(s)	159, 330, 655
CfoI	GCGC	1 cut(s)	461
Cfr13I	GGNCC	1 cut(s)	148
Cfr9I	CCCGGG	1 cut(s)	273
CseI	GACGC	1 cut(s)	341
Csp6I	GTAC	2 cut(s)	8, 313
CviAII	CATG	3 cut(s)	178, 231, 610
CviQI	GTAC	2 cut(s)	8, 313
DdeI	CTNAG	2 cut(s)	166, 540
DpnI	GATC	3 cut(s)	495, 556, 647
DpnII	GATC	3 cut(s)	493, 554, 645
DraIII	CACNNNGTG	1 cut(s)	58
Eam1104I	CTCTTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	313
Eco130I	CCWWGG	2 cut(s)	66, 609
Eco24I	GRGCYC	1 cut(s)	102
Eco47I	GGWCC	1 cut(s)	148
Eco57I	CTGAAG	1 cut(s)	119
Eco88I	CYCGRG	2 cut(s)	120, 273
EcoT14I	CCWWGG	2 cut(s)	66, 609
EcoT22I	ATGCAT	1 cut(s)	343
EcoT38I	GRGCYC	1 cut(s)	102
ErhI	CCWWGG	2 cut(s)	66, 609
FaeI	CATG	3 cut(s)	181, 234, 613
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	3 cut(s)	177, 230, 609
FauNDI	CATATG	1 cut(s)	337
Fnu4HI	GCNGC	3 cut(s)	48, 140, 574
FokI	GGATG	1 cut(s)	453
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	3 cut(s)	48, 140, 574
FspBI	CTAG	1 cut(s)	501
GlaI	GCGC	1 cut(s)	460
GluI	GCNGC	3 cut(s)	48, 140, 574
HapII	CCGG	2 cut(s)	56, 274
HgaI	GACGC	1 cut(s)	341
HhaI	GCGC	1 cut(s)	461
Hin1II	CATG	3 cut(s)	181, 234, 613
Hin6I	GCGC	1 cut(s)	459
HinP1I	GCGC	1 cut(s)	459
HinfI	GANTC	3 cut(s)	39, 164, 174
HpaII	CCGG	2 cut(s)	56, 274
HphI	GGTGA	3 cut(s)	74, 261, 625
Hpy188I	TCNGA	2 cut(s)	38, 584
Hpy188III	TCNNGA	1 cut(s)	294
HpyAV	CCTTC	2 cut(s)	143, 300
HpyCH4III	ACNGT	1 cut(s)	12
HpyCH4IV	ACGT	3 cut(s)	18, 114, 299
HpyCH4V	TGCA	7 cut(s)	47, 79, 181, 335, 341, 477, 576
HpyF10VI	GCNNNNNNNGC	1 cut(s)	497
HpyF3I	CTNAG	2 cut(s)	166, 540
HpySE526I	ACGT	3 cut(s)	18, 114, 299
Hsp92II	CATG	3 cut(s)	181, 234, 613
HspAI	GCGC	1 cut(s)	459
Kzo9I	GATC	3 cut(s)	493, 554, 645
LguI	GCTCTTC	1 cut(s)	313
Lsp1109I	GCAGC	3 cut(s)	59, 151, 560
LweI	GCATC	2 cut(s)	88, 463
MaeI	CTAG	1 cut(s)	501
MaeII	ACGT	3 cut(s)	18, 114, 299
MaeIII	GTNAC	2 cut(s)	70, 115
MalI	GATC	3 cut(s)	495, 556, 647
MboI	GATC	3 cut(s)	493, 554, 645
MboII	GAAGA	3 cut(s)	330, 496, 610
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	4 cut(s)	249, 410, 415, 568
MluI	ACGCGT	1 cut(s)	350
MlyI	GAGTC	2 cut(s)	33, 158
MnlI	CCTC	6 cut(s)	251, 474, 511, 549, 555, 631
Mph1103I	ATGCAT	1 cut(s)	343
MroXI	GAANNNNTTC	1 cut(s)	32
MslI	CAYNNNNRTG	1 cut(s)	87
MspA1I	CMGCKG	1 cut(s)	544
MspI	CCGG	2 cut(s)	56, 274
MspR9I	CCNGG	3 cut(s)	56, 274, 275
Mva1269I	GAATGC	1 cut(s)	341
MvnI	CGCG	2 cut(s)	352, 459
MwoI	GCNNNNNNNGC	1 cut(s)	497
NciI	CCSGG	3 cut(s)	56, 274, 275
NcoI	CCATGG	1 cut(s)	609
NdeI	CATATG	1 cut(s)	337
NdeII	GATC	3 cut(s)	493, 554, 645
NlaIII	CATG	3 cut(s)	181, 234, 613
NlaIV	GGNNCC	4 cut(s)	29, 63, 150, 607
NmeAIII	GCCGAG	1 cut(s)	585
NsiI	ATGCAT	1 cut(s)	343
PciSI	GCTCTTC	1 cut(s)	313
PctI	GAATGC	1 cut(s)	341
PdmI	GAANNNNTTC	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	174
PkrI	GCNGC	3 cut(s)	49, 141, 575
PleI	GAGTC	2 cut(s)	33, 158
PpsI	GAGTC	2 cut(s)	33, 158
Psp1406I	AACGTT	2 cut(s)	114, 299
PspN4I	GGNNCC	4 cut(s)	29, 63, 150, 607
PspPI	GGNCC	1 cut(s)	148
PstI	CTGCAG	1 cut(s)	578
PvuII	CAGCTG	1 cut(s)	544
RsaI	GTAC	2 cut(s)	9, 314
RsaNI	GTAC	2 cut(s)	8, 313
RseI	CAYNNNNRTG	1 cut(s)	87
SapI	GCTCTTC	1 cut(s)	313
SatI	GCNGC	3 cut(s)	48, 140, 574
Sau3AI	GATC	3 cut(s)	493, 554, 645
Sau96I	GGNCC	1 cut(s)	148
SchI	GAGTC	2 cut(s)	33, 158
ScrFI	CCNGG	3 cut(s)	56, 274, 275
SduI	GDGCHC	1 cut(s)	102
SfaNI	GCATC	2 cut(s)	88, 463
SfcI	CTRYAG	1 cut(s)	574
SinI	GGWCC	1 cut(s)	148
SmaI	CCCGGG	1 cut(s)	275
SmiMI	CAYNNNNRTG	1 cut(s)	87
Sse9I	AATT	4 cut(s)	249, 410, 415, 568
SspMI	CTAG	1 cut(s)	501
StyD4I	CCNGG	3 cut(s)	54, 272, 273
StyI	CCWWGG	2 cut(s)	66, 609
TaaI	ACNGT	1 cut(s)	12
TaiI	ACGT	3 cut(s)	21, 117, 302
TaqI	TCGA	1 cut(s)	256
TasI	AATT	4 cut(s)	249, 410, 415, 568
TfiI	GAWTC	1 cut(s)	174
TscAI	CASTG	3 cut(s)	159, 337, 655
TseI	GCWGC	3 cut(s)	47, 139, 573
TspDTI	ATGAA	2 cut(s)	219, 440
TspGWI	ACGGA	1 cut(s)	214
TspMI	CCCGGG	1 cut(s)	273
TspRI	CASTG	3 cut(s)	159, 337, 655
VpaK11BI	GGWCC	1 cut(s)	148
XapI	RAATTY	2 cut(s)	249, 410
XmaI	CCCGGG	1 cut(s)	273
XmnI	GAANNNNTTC	1 cut(s)	32
XspI	CTAG	1 cut(s)	501
Zsp2I	ATGCAT	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.