Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8224972.1

Orthogroup ID

OG0008233

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 746

Gene Structure 746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8224972.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 622 bp

gctcgaaccggagccggagccggagaaaaccgacgtcaagcacatagcgttcggcattgccgcgtcggccaagctgtgggcccagaggaagagctacatcaagctctggtacaagccggactccatgcgcggcgtagtgtggctggaccggggcgtggccaatcgcagcggcgaggggctcccgccgctcaagatatccggcgacacctctgggttcgggtacaccaacaagcagggccaccgctccgccatccggatctcgcggatcgtctccgaaacgctgcgtttgggcctcaaggacgtccgctggttcgtcatgggcgacgacgacaccgtcttcatcaccgacaacctcgtccgcgtcctccggaaatacgaccacacccagtactactacattggctccctgtcggaatcccacttgcagaacatcttcttctcgtacggcatggcgtacggcggcggcggcttcgccataagctaccctctggccaaggccctaagcaaaatgcaagacaggtgcatacaacgttatcccggtctgtacggctccgacgaccgaatgcaggcctgcatggccgaactgggtgttccactcactaaagaactcggctttcaccag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF604

Protein Analysis

207

Amino Acids

23.37

Weight (kDa)

9.11

Isoelectric Point (pI)

41.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11350 AT4G11350 AT4G23490 AT5G41460
fragaria_vesca	FvH4_5g02990 FvH4_5g02990
malus_domestica	MD00G1086500.v1.1 MD06G1088800.v1.1
prunus_persica	Prupe.5G104700_v2.0.a1
pyrus_communis	pycom06g08470 pycom14g10430
rosa_chinensis	RchiOBHm_Chr7g0196881 RchiOBHm_Chr7g0196891
rosa_laevigata	RLG00000003981
rosa_multiflora	Rmu_co8224972.1_g000001 Rmu_co8340915.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258880
rosa_rugosa	Rorug07G0036400
rosa_samantha	Rh7AG160900 Rh7BG163100 Rh7CG169200 Rh7DG162500
rosa_wichuraiana	Rw7G014070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	333, 354
AatII	GACGTC	2 cut(s)	37, 304
AccB7I	CCANNNNNTGG	1 cut(s)	76
AccBSI	CCGCTC	2 cut(s)	188, 244
AccII	CGCG	4 cut(s)	63, 130, 263, 361
AccIII	TCCGGA	2 cut(s)	253, 367
AclI	AACGTT	1 cut(s)	530
AclWI	GGATC	2 cut(s)	264, 273
AcoI	YGGCCR	4 cut(s)	67, 157, 490, 577
AcyI	GRCGYC	2 cut(s)	34, 301
AfaI	GTAC	6 cut(s)	111, 222, 390, 444, 456, 546
AfiI	CCNNNNNNNGG	4 cut(s)	76, 155, 253, 566
AluBI	AGCT	4 cut(s)	74, 94, 104, 481
AluI	AGCT	4 cut(s)	74, 94, 104, 481
Alw26I	GTCTC	1 cut(s)	275
AlwI	GGATC	2 cut(s)	264, 273
Aor13HI	TCCGGA	2 cut(s)	253, 367
AoxI	GGCC	9 cut(s)	67, 79, 157, 236, 290, 490, 496, 568, 577
ApaI	GGGCCC	1 cut(s)	83
ApeKI	GCWGC	2 cut(s)	166, 281
Asp700I	GAANNNNTTC	1 cut(s)	432
AspLEI	GCGC	1 cut(s)	130
AspS9I	GGNCC	6 cut(s)	79, 80, 146, 236, 290, 497
AsuC2I	CCSGG	2 cut(s)	150, 538
AsuHPI	GGTGA	2 cut(s)	335, 609
AvaII	GGWCC	1 cut(s)	146
BaeGI	GKGCMC	1 cut(s)	83
BalI	TGGCCA	2 cut(s)	159, 492
BanII	GRGCYC	2 cut(s)	83, 181
BbsI	GAAGAC	1 cut(s)	329
BbvI	GCAGC	2 cut(s)	178, 268
BccI	CCATC	1 cut(s)	258
BceAI	ACGGC	3 cut(s)	461, 473, 563
BcnI	CCSGG	2 cut(s)	150, 538
BcoDI	GTCTC	1 cut(s)	275
BglI	GCCNNNNNGGC	2 cut(s)	66, 576
BisI	GCNGC	9 cut(s)	61, 131, 167, 170, 186, 282, 461, 464, 467
BlsI	GCNGC	9 cut(s)	62, 132, 168, 171, 187, 283, 462, 465, 468
BmcAI	AGTACT	1 cut(s)	390
Bme1390I	CCNGG	2 cut(s)	150, 538
Bme18I	GGWCC	1 cut(s)	146
BmgT120I	GGNCC	6 cut(s)	79, 80, 146, 236, 290, 497
BmiI	GGNNCC	6 cut(s)	13, 19, 81, 180, 404, 551
BmrFI	CCNGG	2 cut(s)	150, 538
BmrI	ACTGGG	2 cut(s)	380, 594
BmuI	ACTGGG	2 cut(s)	380, 594
BpiI	GAAGAC	1 cut(s)	329
Bpu10I	CCTNAGC	1 cut(s)	501
BpuEI	CTTGAG	2 cut(s)	174, 279
BpuMI	CCSGG	2 cut(s)	150, 538
BsaHI	GRCGYC	2 cut(s)	34, 301
BsaJI	CCNNGG	2 cut(s)	149, 493
BsaWI	WCCGGW	3 cut(s)	8, 253, 367
BsaXI	ACNNNNNCTCC	2 cut(s)	387, 417
Bsc4I	CCNNNNNNNGG	4 cut(s)	76, 155, 253, 566
Bse1I	ACTGG	2 cut(s)	386, 589
Bse3DI	GCAATG	1 cut(s)	55
BseAI	TCCGGA	2 cut(s)	253, 367
BseDI	CCNNGG	2 cut(s)	149, 493
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	4 cut(s)	76, 155, 253, 566
BseMI	GCAATG	1 cut(s)	55
BseNI	ACTGG	2 cut(s)	386, 589
BseSI	GKGCMC	1 cut(s)	83
BseXI	GCAGC	2 cut(s)	178, 268
Bsh1236I	CGCG	4 cut(s)	63, 130, 263, 361
Bsh1285I	CGRYCG	1 cut(s)	560
BshFI	GGCC	9 cut(s)	69, 81, 159, 238, 292, 492, 498, 570, 579
BsiEI	CGRYCG	1 cut(s)	560
BsiSI	CCGG	9 cut(s)	9, 15, 21, 117, 149, 199, 254, 368, 538
BsiWI	CGTACG	2 cut(s)	442, 454
BslI	CCNNNNNNNGG	4 cut(s)	76, 155, 253, 566
BsmAI	GTCTC	1 cut(s)	275
BsmBI	CGTCTC	1 cut(s)	275
BsmI	GAATGC	1 cut(s)	568
BsnI	GGCC	9 cut(s)	69, 81, 159, 238, 292, 492, 498, 570, 579
Bsp120I	GGGCCC	1 cut(s)	79
Bsp1286I	GDGCHC	2 cut(s)	83, 181
Bsp13I	TCCGGA	2 cut(s)	253, 367
Bsp143I	GATC	2 cut(s)	256, 265
BspANI	GGCC	9 cut(s)	69, 81, 159, 238, 292, 492, 498, 570, 579
BspEI	TCCGGA	2 cut(s)	253, 367
BspFNI	CGCG	4 cut(s)	63, 130, 263, 361
BspLI	GGNNCC	6 cut(s)	13, 19, 81, 180, 404, 551
BspPI	GGATC	2 cut(s)	264, 273
BspQI	GCTCTTC	1 cut(s)	84
BsrBI	CCGCTC	2 cut(s)	188, 244
BsrDI	GCAATG	1 cut(s)	55
BsrI	ACTGG	2 cut(s)	386, 589
BssECI	CCNNGG	2 cut(s)	149, 493
BssMI	GATC	2 cut(s)	256, 265
BssNI	GRCGYC	2 cut(s)	34, 301
BssT1I	CCWWGG	1 cut(s)	493
Bst4CI	ACNGT	1 cut(s)	335
Bst6I	CTCTTC	1 cut(s)	84
BstACI	GRCGYC	2 cut(s)	34, 301
BstC8I	GCNNGC	2 cut(s)	568, 572
BstDEI	CTNAG	1 cut(s)	501
BstF5I	GGATG	1 cut(s)	250
BstFNI	CGCG	4 cut(s)	63, 130, 263, 361
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	2 cut(s)	259, 268
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	2 cut(s)	256, 265
BstMCI	CGRYCG	1 cut(s)	560
BstMWI	GCNNNNNNNGC	4 cut(s)	66, 185, 466, 576
BstSCI	CCNGG	2 cut(s)	148, 536
BstSLI	GKGCMC	1 cut(s)	83
BstUI	CGCG	4 cut(s)	63, 130, 263, 361
BstV1I	GCAGC	2 cut(s)	178, 268
BstV2I	GAAGAC	1 cut(s)	329
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BsuRI	GGCC	9 cut(s)	69, 81, 159, 238, 292, 492, 498, 570, 579
BtsCI	GGATG	1 cut(s)	250
Cac8I	GCNNGC	2 cut(s)	568, 572
CfoI	GCGC	1 cut(s)	130
Cfr13I	GGNCC	6 cut(s)	79, 80, 146, 236, 290, 497
CseI	GACGC	2 cut(s)	52, 350
Csp6I	GTAC	6 cut(s)	110, 221, 389, 443, 455, 545
CviAII	CATG	4 cut(s)	125, 317, 449, 575
CviQI	GTAC	6 cut(s)	110, 221, 389, 443, 455, 545
DdeI	CTNAG	1 cut(s)	501
DpnI	GATC	2 cut(s)	258, 267
DpnII	GATC	2 cut(s)	256, 265
DrdI	GACNNNNNNGTC	2 cut(s)	333, 354
DseDI	GACNNNNNNGTC	2 cut(s)	333, 354
EaeI	YGGCCR	4 cut(s)	67, 157, 490, 577
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
EciI	GGCGGA	1 cut(s)	236
Eco130I	CCWWGG	1 cut(s)	493
Eco147I	AGGCCT	1 cut(s)	570
Eco24I	GRGCYC	2 cut(s)	83, 181
Eco32I	GATATC	1 cut(s)	196
Eco47I	GGWCC	1 cut(s)	146
EcoO109I	RGGNCCY	1 cut(s)	497
EcoRV	GATATC	1 cut(s)	196
EcoT14I	CCWWGG	1 cut(s)	493
EcoT38I	GRGCYC	2 cut(s)	83, 181
ErhI	CCWWGG	1 cut(s)	493
Esp3I	CGTCTC	1 cut(s)	275
FaeI	CATG	4 cut(s)	128, 320, 452, 578
FaiI	YATR	7 cut(s)	45, 126, 318, 450, 477, 525, 576
FatI	CATG	4 cut(s)	124, 316, 448, 574
FauI	CCCGC	1 cut(s)	190
Fnu4HI	GCNGC	9 cut(s)	61, 131, 167, 170, 186, 282, 461, 464, 467
FokI	GGATG	1 cut(s)	237
FriOI	GRGCYC	2 cut(s)	83, 181
Fsp4HI	GCNGC	9 cut(s)	61, 131, 167, 170, 186, 282, 461, 464, 467
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	9 cut(s)	61, 131, 167, 170, 186, 282, 461, 464, 467
HaeIII	GGCC	9 cut(s)	69, 81, 159, 238, 292, 492, 498, 570, 579
HapII	CCGG	9 cut(s)	9, 15, 21, 117, 149, 199, 254, 368, 538
HgaI	GACGC	2 cut(s)	52, 350
HhaI	GCGC	1 cut(s)	130
Hin1I	GRCGYC	2 cut(s)	34, 301
Hin1II	CATG	4 cut(s)	128, 320, 452, 578
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HinfI	GANTC	2 cut(s)	120, 414
HpaII	CCGG	9 cut(s)	9, 15, 21, 117, 149, 199, 254, 368, 538
HphI	GGTGA	2 cut(s)	335, 609
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	3 cut(s)	275, 413, 554
Hpy188III	TCNNGA	3 cut(s)	191, 254, 368
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	5 cut(s)	36, 68, 327, 330, 558
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4IV	ACGT	3 cut(s)	34, 301, 530
HpyCH4V	TGCA	5 cut(s)	425, 512, 523, 566, 574
HpyF10VI	GCNNNNNNNGC	4 cut(s)	66, 185, 466, 576
HpyF3I	CTNAG	1 cut(s)	501
HpySE526I	ACGT	3 cut(s)	34, 301, 530
Hsp92I	GRCGYC	2 cut(s)	34, 301
Hsp92II	CATG	4 cut(s)	128, 320, 452, 578
HspAI	GCGC	1 cut(s)	128
Kpn2I	TCCGGA	2 cut(s)	253, 367
Kzo9I	GATC	2 cut(s)	256, 265
LguI	GCTCTTC	1 cut(s)	84
LmnI	GCTCC	6 cut(s)	11, 17, 184, 249, 408, 555
Lsp1109I	GCAGC	2 cut(s)	178, 268
MaeII	ACGT	3 cut(s)	34, 301, 530
MalI	GATC	2 cut(s)	258, 267
MbiI	CCGCTC	2 cut(s)	188, 244
MboI	GATC	2 cut(s)	256, 265
MboII	GAAGA	4 cut(s)	101, 329, 425, 428
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	2 cut(s)	83, 181
MlsI	TGGCCA	2 cut(s)	159, 492
MluNI	TGGCCA	2 cut(s)	159, 492
MlyI	GAGTC	1 cut(s)	114
MmeI	TCCRAC	2 cut(s)	391, 577
MnlI	CCTC	7 cut(s)	79, 167, 218, 303, 363, 375, 496
Mox20I	TGGCCA	2 cut(s)	159, 492
MroI	TCCGGA	2 cut(s)	253, 367
MroXI	GAANNNNTTC	1 cut(s)	432
MscI	TGGCCA	2 cut(s)	159, 492
Msp20I	TGGCCA	2 cut(s)	159, 492
MspA1I	CMGCKG	2 cut(s)	169, 307
MspI	CCGG	9 cut(s)	9, 15, 21, 117, 149, 199, 254, 368, 538
MspR9I	CCNGG	2 cut(s)	150, 538
Mva1269I	GAATGC	1 cut(s)	568
MvnI	CGCG	4 cut(s)	63, 130, 263, 361
MwoI	GCNNNNNNNGC	4 cut(s)	66, 185, 466, 576
NciI	CCSGG	2 cut(s)	150, 538
NdeII	GATC	2 cut(s)	256, 265
NlaIII	CATG	4 cut(s)	128, 320, 452, 578
NlaIV	GGNNCC	6 cut(s)	13, 19, 81, 180, 404, 551
NmeAIII	GCCGAG	1 cut(s)	589
PceI	AGGCCT	1 cut(s)	570
PciSI	GCTCTTC	1 cut(s)	84
PcsI	WCGNNNNNNNCGW	3 cut(s)	319, 331, 553
PctI	GAATGC	1 cut(s)	568
PdmI	GAANNNNTTC	1 cut(s)	432
PfeI	GAWTC	1 cut(s)	414
Pfl23II	CGTACG	2 cut(s)	442, 454
PflFI	GACNNNGTC	1 cut(s)	333
PflMI	CCANNNNNTGG	1 cut(s)	76
PkrI	GCNGC	9 cut(s)	62, 132, 168, 171, 187, 283, 462, 465, 468
PleI	GAGTC	1 cut(s)	114
PpsI	GAGTC	1 cut(s)	114
Psp1406I	AACGTT	1 cut(s)	530
PspLI	CGTACG	2 cut(s)	442, 454
PspN4I	GGNNCC	6 cut(s)	13, 19, 81, 180, 404, 551
PspOMI	GGGCCC	1 cut(s)	79
PspPI	GGNCC	6 cut(s)	79, 80, 146, 236, 290, 497
PsuI	RGATCY	1 cut(s)	256
PsyI	GACNNNGTC	1 cut(s)	333
RsaI	GTAC	6 cut(s)	111, 222, 390, 444, 456, 546
RsaNI	GTAC	6 cut(s)	110, 221, 389, 443, 455, 545
SapI	GCTCTTC	1 cut(s)	84
SatI	GCNGC	9 cut(s)	61, 131, 167, 170, 186, 282, 461, 464, 467
Sau3AI	GATC	2 cut(s)	256, 265
Sau96I	GGNCC	6 cut(s)	79, 80, 146, 236, 290, 497
ScaI	AGTACT	1 cut(s)	390
SchI	GAGTC	1 cut(s)	114
ScrFI	CCNGG	2 cut(s)	150, 538
SduI	GDGCHC	2 cut(s)	83, 181
SfiI	GGCCNNNNNGGCC	1 cut(s)	576
SinI	GGWCC	1 cut(s)	146
SmlI	CTYRAG	2 cut(s)	189, 294
SmoI	CTYRAG	2 cut(s)	189, 294
SseBI	AGGCCT	1 cut(s)	570
StuI	AGGCCT	1 cut(s)	570
StyD4I	CCNGG	2 cut(s)	148, 536
StyI	CCWWGG	1 cut(s)	493
TaaI	ACNGT	1 cut(s)	335
TaiI	ACGT	3 cut(s)	37, 304, 533
TaqI	TCGA	1 cut(s)	4
TaqII	GACCGA	1 cut(s)	574
TatI	WGTACW	1 cut(s)	388
TauI	GCSGC	7 cut(s)	63, 133, 172, 188, 463, 466, 469
TfiI	GAWTC	1 cut(s)	414
TseI	GCWGC	2 cut(s)	166, 281
TspDTI	ATGAA	1 cut(s)	329
Tth111I	GACNNNGTC	1 cut(s)	333
Van91I	CCANNNNNTGG	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	146
XmnI	GAANNNNTTC	1 cut(s)	432
ZraI	GACGTC	2 cut(s)	35, 302
ZrmI	AGTACT	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.