Rorug07G0036400

Protein of unknown function, DUF604

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
2586463 .. 2587640
1178 bp
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UTR
Exon/CDS
Intron
Rorug07G0036400.1

Sequence Viewer

Length: 276 bp
ATGTCAAGCCGAACAACAAGAGCTTCTCAACCCACAGAGGACGAGATTAAGGAGCTCATCTTAAAACTACAAGCACTGCTACCACAGCTTAATCATAGGCCAAACACAAAGGCGTCAGCATCAACCATTTTGGAAGAAACTTGTTCTTACATCAAGAGGCTGCATAAAGAGGTAGGCGACCTGAGCCAAAGACTATCTCAACTACTGCATGATTCTGCAGAATTTGTTGAGGTTGATGAAGAGCTTATTACACGACTCCTCTCCAACATTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

91

Amino Acids

10.36

Weight (kDa)

5.56

Isoelectric Point (pI)

60.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH_ILI PF23174 12 - 71 3.9e-20 ILI bHLH domain
HLH PF00010 14 - 55 8.5e-07 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 221
AcyI GRCGYC 1 cut(s) 113
AluBI AGCT 4 cut(s) 23, 55, 88, 244
AluI AGCT 4 cut(s) 23, 55, 88, 244
Alw21I GWGCWC 1 cut(s) 57
AoxI GGCC 1 cut(s) 98
ApeKI GCWGC 1 cut(s) 160
ApoI RAATTY 1 cut(s) 221
AseI ATTAAT 1 cut(s) 270
BanII GRGCYC 1 cut(s) 57
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 147
BfmI CTRYAG 1 cut(s) 216
BisI GCNGC 1 cut(s) 161
BlsI GCNGC 1 cut(s) 162
BmsI GCATC 1 cut(s) 128
Bpu10I CCTNAGC 1 cut(s) 182
BsaHI GRCGYC 1 cut(s) 113
BseMII CTCAG 1 cut(s) 173
BseRI GAGGAG 1 cut(s) 248
BseXI GCAGC 1 cut(s) 147
BshFI GGCC 1 cut(s) 100
BsiHKAI GWGCWC 1 cut(s) 57
BsnI GGCC 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 57
BspANI GGCC 1 cut(s) 100
BspCNI CTCAG 1 cut(s) 174
BspMAI CTGCAG 1 cut(s) 220
BspQI GCTCTTC 1 cut(s) 234
BssNI GRCGYC 1 cut(s) 113
Bst6I CTCTTC 1 cut(s) 234
BstACI GRCGYC 1 cut(s) 113
BstDEI CTNAG 1 cut(s) 182
BstMWI GCNNNNNNNGC 2 cut(s) 85, 183
BstSFI CTRYAG 1 cut(s) 216
BstV1I GCAGC 1 cut(s) 147
BsuRI GGCC 1 cut(s) 100
BtsI GCAGTG 1 cut(s) 74
BtsIMutI CAGTG 1 cut(s) 74
CseI GACGC 1 cut(s) 102
CviAII CATG 1 cut(s) 209
CviJI RGCY 8 cut(s) 9, 23, 55, 88, 100, 160, 186, 244
CviKI_1 RGCY 8 cut(s) 9, 23, 55, 88, 100, 160, 186, 244
DdeI CTNAG 1 cut(s) 182
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Ecl136II GAGCTC 1 cut(s) 55
Eco24I GRGCYC 1 cut(s) 57
Eco53kI GAGCTC 1 cut(s) 55
EcoICRI GAGCTC 1 cut(s) 55
EcoT38I GRGCYC 1 cut(s) 57
FaeI CATG 1 cut(s) 212
FaiI YATR 3 cut(s) 96, 165, 210
FatI CATG 1 cut(s) 208
Fnu4HI GCNGC 1 cut(s) 161
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 161
GluI GCNGC 1 cut(s) 161
HaeIII GGCC 1 cut(s) 100
HgaI GACGC 1 cut(s) 102
Hin1I GRCGYC 1 cut(s) 113
Hin1II CATG 1 cut(s) 212
HinfI GANTC 2 cut(s) 212, 255
Hpy188III TCNNGA 1 cut(s) 154
HpyCH4V TGCA 3 cut(s) 163, 208, 218
HpyF10VI GCNNNNNNNGC 2 cut(s) 85, 183
HpyF3I CTNAG 1 cut(s) 182
Hsp92I GRCGYC 1 cut(s) 113
Hsp92II CATG 1 cut(s) 212
LguI GCTCTTC 1 cut(s) 234
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 1 cut(s) 194
Lsp1109I GCAGC 1 cut(s) 147
LweI GCATC 1 cut(s) 128
MboII GAAGA 2 cut(s) 146, 251
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 2 cut(s) 221, 271
MlyI GAGTC 1 cut(s) 249
MnlI CCTC 5 cut(s) 31, 150, 163, 223, 269
MseI TTAA 5 cut(s) 48, 62, 90, 270, 274
MwoI GCNNNNNNNGC 2 cut(s) 85, 183
NlaIII CATG 1 cut(s) 212
PacI TTAATTAA 1 cut(s) 274
PciSI GCTCTTC 1 cut(s) 234
PfeI GAWTC 1 cut(s) 212
PkrI GCNGC 1 cut(s) 162
PleI GAGTC 1 cut(s) 249
PpsI GAGTC 1 cut(s) 249
PshBI ATTAAT 1 cut(s) 270
Psp124BI GAGCTC 1 cut(s) 57
PstI CTGCAG 1 cut(s) 220
SacI GAGCTC 1 cut(s) 57
SapI GCTCTTC 1 cut(s) 234
SaqAI TTAA 5 cut(s) 48, 62, 90, 270, 274
SatI GCNGC 1 cut(s) 161
SchI GAGTC 1 cut(s) 249
SduI GDGCHC 1 cut(s) 57
SetI ASST 7 cut(s) 25, 57, 90, 174, 183, 234, 246
SfaNI GCATC 1 cut(s) 128
SfcI CTRYAG 1 cut(s) 216
SgeI CNNG 9 cut(s) 18, 30, 55, 83, 153, 166, 193, 221, 264
Sse9I AATT 2 cut(s) 221, 271
SstI GAGCTC 1 cut(s) 57
TasI AATT 2 cut(s) 221, 271
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 5 cut(s) 48, 62, 90, 270, 274
Tru9I TTAA 5 cut(s) 48, 62, 90, 270, 274
TscAI CASTG 1 cut(s) 81
TseI GCWGC 1 cut(s) 160
TspDTI ATGAA 1 cut(s) 252
TspRI CASTG 1 cut(s) 81
VspI ATTAAT 1 cut(s) 270
XapI RAATTY 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.