RchiOBHm_Chr7g0196891

Protein of unknown function, DUF604

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0008233
Physical Location & Seq
Forward (+)
14841873 .. 14842915
1043 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17613

Sequence Viewer

Length: 237 bp
ATGAATACGACATTCAGCGAGTATGTCCAGCATCGCGCCCCTCATCCCTTGTGCAAGTGGAAGATGGCTGATCCTGCTAGATTTGAGAAAGTTGAGGTCTATAAGAAGCCTGACCCTCAGCTGTGGAATAGATCGCCGAGGAGAAATTGCTGCAGGGTCAGAAACCCGAAACAGAAGAAAGGAACCATGGTGATAGATGTTGGTTTATGTAAAGAGGGCGAGATCAGTGAAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF604

Protein Analysis

78

Amino Acids

9.2

Weight (kDa)

9.55

Isoelectric Point (pI)

51.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF604 PF04646 2 - 51 5.8e-07 Protein of unknown function, DUF604
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 36
AclWI GGATC 1 cut(s) 65
AluBI AGCT 1 cut(s) 121
AluI AGCT 1 cut(s) 121
AlwI GGATC 1 cut(s) 65
ApeKI GCWGC 1 cut(s) 150
AspLEI GCGC 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 202
BbvCI CCTCAGC 1 cut(s) 117
BbvI GCAGC 1 cut(s) 137
BccI CCATC 1 cut(s) 58
BfaI CTAG 1 cut(s) 78
BfmI CTRYAG 1 cut(s) 151
BisI GCNGC 1 cut(s) 151
BlsI GCNGC 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 184
BmsI GCATC 1 cut(s) 40
Bpu10I CCTNAGC 1 cut(s) 117
BsaJI CCNNGG 2 cut(s) 137, 186
BseDI CCNNGG 2 cut(s) 137, 186
BseGI GGATG 1 cut(s) 43
BseMII CTCAG 1 cut(s) 131
BseRI GAGGAG 1 cut(s) 154
BseXI GCAGC 1 cut(s) 137
Bsh1236I CGCG 1 cut(s) 36
Bsp143I GATC 3 cut(s) 70, 131, 222
Bsp19I CCATGG 1 cut(s) 186
BspCNI CTCAG 1 cut(s) 130
BspFNI CGCG 1 cut(s) 36
BspLI GGNNCC 1 cut(s) 184
BspMAI CTGCAG 1 cut(s) 155
BspPI GGATC 1 cut(s) 65
BssECI CCNNGG 2 cut(s) 137, 186
BssMI GATC 3 cut(s) 70, 131, 222
BssT1I CCWWGG 1 cut(s) 186
BstDEI CTNAG 1 cut(s) 117
BstDSI CCRYGG 1 cut(s) 186
BstF5I GGATG 1 cut(s) 43
BstFNI CGCG 1 cut(s) 36
BstHHI GCGC 1 cut(s) 38
BstKTI GATC 3 cut(s) 73, 134, 225
BstMBI GATC 3 cut(s) 70, 131, 222
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstSFI CTRYAG 1 cut(s) 151
BstUI CGCG 1 cut(s) 36
BstV1I GCAGC 1 cut(s) 137
BtgI CCRYGG 1 cut(s) 186
BtgZI GCGATG 1 cut(s) 17
BtsCI GGATG 1 cut(s) 43
BtsIMutI CAGTG 1 cut(s) 232
CfoI GCGC 1 cut(s) 38
CviAII CATG 1 cut(s) 187
CviJI RGCY 3 cut(s) 68, 109, 121
CviKI_1 RGCY 3 cut(s) 68, 109, 121
DdeI CTNAG 1 cut(s) 117
DpnI GATC 3 cut(s) 72, 133, 224
DpnII GATC 3 cut(s) 70, 131, 222
Eco130I CCWWGG 1 cut(s) 186
EcoT14I CCWWGG 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 1 cut(s) 190
FaiI YATR 5 cut(s) 24, 102, 188, 208, 235
FatI CATG 1 cut(s) 186
Fnu4HI GCNGC 1 cut(s) 151
FokI GGATG 1 cut(s) 30
Fsp4HI GCNGC 1 cut(s) 151
FspBI CTAG 1 cut(s) 78
GlaI GCGC 1 cut(s) 37
GluI GCNGC 1 cut(s) 151
HhaI GCGC 1 cut(s) 38
Hin1II CATG 1 cut(s) 190
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HphI GGTGA 1 cut(s) 202
Hpy188I TCNGA 1 cut(s) 161
HpyCH4V TGCA 2 cut(s) 54, 153
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpyF3I CTNAG 1 cut(s) 117
Hsp92II CATG 1 cut(s) 190
HspAI GCGC 1 cut(s) 36
Kzo9I GATC 3 cut(s) 70, 131, 222
LpnPI CCDG 4 cut(s) 41, 87, 123, 139
Lsp1109I GCAGC 1 cut(s) 137
LweI GCATC 1 cut(s) 40
MaeI CTAG 1 cut(s) 78
MalI GATC 3 cut(s) 72, 133, 224
MboI GATC 3 cut(s) 70, 131, 222
MboII GAAGA 2 cut(s) 73, 187
MluCI AATT 1 cut(s) 145
MnlI CCTC 5 cut(s) 51, 88, 126, 132, 208
MspA1I CMGCKG 1 cut(s) 121
MvnI CGCG 1 cut(s) 36
MwoI GCNNNNNNNGC 1 cut(s) 74
NcoI CCATGG 1 cut(s) 186
NdeII GATC 3 cut(s) 70, 131, 222
NlaIII CATG 1 cut(s) 190
NlaIV GGNNCC 1 cut(s) 184
NmeAIII GCCGAG 1 cut(s) 162
PkrI GCNGC 1 cut(s) 152
PspN4I GGNNCC 1 cut(s) 184
PstI CTGCAG 1 cut(s) 155
PvuII CAGCTG 1 cut(s) 121
SatI GCNGC 1 cut(s) 151
Sau3AI GATC 3 cut(s) 70, 131, 222
SetI ASST 2 cut(s) 99, 123
SfaNI GCATC 1 cut(s) 40
SfcI CTRYAG 1 cut(s) 151
Sse9I AATT 1 cut(s) 145
SspMI CTAG 1 cut(s) 78
StyI CCWWGG 1 cut(s) 186
TasI AATT 1 cut(s) 145
TscAI CASTG 1 cut(s) 232
TseI GCWGC 1 cut(s) 150
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 232
XspI CTAG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.