AT5G41470

nuclear transport factor 2 (NTF2) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013555
Physical Location & Seq
Forward (+)
16593841 .. 16595568
1728 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G41470.1

Sequence Viewer

Length: 834 bp
ATGGCCTCCATGGTTAATGTTACGAGTATAATAGTTACGAGAAATCTCATCACCAAATTCAAAACTCCACGGCTCAAACTAGATCTACCTTCTCTACAACATTCTAGCCAGTTGAATGCAATCAAGAATGATCCAATAAAAATGATAAATAAGTACGCTTCAAGGAGAAATATCGTGGTTTCATGTTTGGATCGACCTAACTCTAGGCCGAATCAAATCTCTGGGTATGATGCTGTTATGAAATTTTATTCCTCTATAAACGAGAAGAATCAAGACCAATTAAGTAGTTGCATCTCCAGCGATTGTTTTATCGATGATTTCTCCTTTCCAAAGCCTTTTCGAGGGAAACAAGAAGCTATGGAGTTCTTCGAAGAACTTGTGAAGAGTATGGGACAAAACGTTAAGTTTTGTGTTGAAAATGTGTGTGAAGGTGATGGACATAGTGCTGCTGTTAATTGGCATCTTGAATGGAAAGGACGAAAAATTCCCTTTACAAGAGGATGTAGCTTCTATGAATTTATAGATGAAGGAGGAAGACTGGTTATAAGAAACGCGAGGATTTTGATTGAATCGCCAATTAAACCGGGAGGAATAACATTGAGCCTGTTAAAGAACATCACCTTCTTGTTCGACGAATTTCCAAAAGGAGCTGAGTTGTTTTTGGAAAAACCTTATGCTATAATCCAAGCAGCAATTCGAATTTATGGACTATTTTTGGCGCCACTCATAAACCATGTAATGGCAAGCTACCTGAAGCTTCTAAGCAATATGGCCGAATTCTTCTTATTGGTCGTCAAAATTATCATCAAAATTCGAAACCTCTTCTTCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SnoaL_2

Protein Analysis

277

Amino Acids

31.62

Weight (kDa)

9.31

Isoelectric Point (pI)

38.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SnoaL_2 PF12680 81 - 181 1.1e-08 SnoaL-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013555)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41470
fragaria_vesca FvH4_5g03000
malus_domestica MD06G1089000.v1.1
prunus_persica Prupe.5G104900_v2.0.a1 Prupe.5G104900_v2.0.a1 Prupe.5G104900_v2.0.a1
pyrus_communis pycom06g08500
rosa_chinensis RchiOBHm_Chr7g0196861
rosa_laevigata RLG00000003983
rosa_multiflora Rmu_sc0001083.1_g000018
rosa_roxburghii Rroxscaffold_3G00258900
rosa_rugosa Rorug07G0036200 Rorug07G0036300
rosa_samantha Rh7AG160800 Rh7BG162700 Rh7CG169100 Rh7DG162200
rosa_wichuraiana Rw7G014060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 545
AccB1I GGYRCC 1 cut(s) 718
AccB7I CCANNNNNTGG 1 cut(s) 739
AccII CGCG 1 cut(s) 554
AclI AACGTT 1 cut(s) 399
AclWI GGATC 2 cut(s) 125, 198
AcoI YGGCCR 1 cut(s) 771
AcsI RAATTY 8 cut(s) 56, 242, 483, 515, 635, 699, 776, 810
AcuI CTGAAG 1 cut(s) 773
AcyI GRCGYC 1 cut(s) 719
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 2 cut(s) 341, 739
AgsI TTSAA 7 cut(s) 61, 115, 162, 416, 467, 569, 829
AjuI GAANNNNNNNTTGG 2 cut(s) 678, 710
AluBI AGCT 5 cut(s) 356, 507, 650, 747, 757
AluI AGCT 5 cut(s) 356, 507, 650, 747, 757
AlwI GGATC 2 cut(s) 125, 198
AoxI GGCC 3 cut(s) 3, 206, 771
ApeKI GCWGC 2 cut(s) 446, 689
ApoI RAATTY 8 cut(s) 56, 242, 483, 515, 635, 699, 776, 810
AspLEI GCGC 1 cut(s) 721
AsuC2I CCSGG 1 cut(s) 585
AsuHPI GGTGA 3 cut(s) 43, 443, 610
AsuII TTCGAA 3 cut(s) 369, 697, 814
BanI GGYRCC 1 cut(s) 718
BbsI GAAGAC 1 cut(s) 541
BbvI GCAGC 2 cut(s) 433, 701
BccI CCATC 1 cut(s) 428
BceAI ACGGC 1 cut(s) 86
BcnI CCSGG 1 cut(s) 585
BfaI CTAG 3 cut(s) 80, 105, 204
BfoI RGCGCY 1 cut(s) 722
BglII AGATCT 1 cut(s) 82
BisI GCNGC 2 cut(s) 447, 690
BlsI GCNGC 2 cut(s) 448, 691
Bme1390I CCNGG 1 cut(s) 585
BmiI GGNNCC 1 cut(s) 720
BmrFI CCNGG 1 cut(s) 585
BmsI GCATC 3 cut(s) 220, 300, 469
BpiI GAAGAC 1 cut(s) 541
BpmI CTGGAG 1 cut(s) 280
Bpu14I TTCGAA 3 cut(s) 369, 697, 814
BpuMI CCSGG 1 cut(s) 585
Bsa29I ATCGAT 1 cut(s) 312
BsaHI GRCGYC 1 cut(s) 719
BsaJI CCNNGG 2 cut(s) 9, 68
Bsc4I CCNNNNNNNGG 2 cut(s) 341, 739
Bse1I ACTGG 2 cut(s) 109, 543
BseCI ATCGAT 1 cut(s) 312
BseDI CCNNGG 2 cut(s) 9, 68
BseGI GGATG 1 cut(s) 506
BseLI CCNNNNNNNGG 2 cut(s) 341, 739
BseMII CTCAG 1 cut(s) 642
BseNI ACTGG 2 cut(s) 109, 543
BseXI GCAGC 2 cut(s) 433, 701
Bsh1236I CGCG 1 cut(s) 554
BshFI GGCC 3 cut(s) 5, 208, 773
BshNI GGYRCC 1 cut(s) 718
BshVI ATCGAT 1 cut(s) 312
BsiSI CCGG 1 cut(s) 584
BslFI GGGAC 1 cut(s) 405
BslI CCNNNNNNNGG 2 cut(s) 341, 739
BsmFI GGGAC 1 cut(s) 405
BsmI GAATGC 1 cut(s) 121
BsnI GGCC 3 cut(s) 5, 208, 773
Bsp119I TTCGAA 3 cut(s) 369, 697, 814
Bsp143I GATC 3 cut(s) 82, 130, 190
Bsp19I CCATGG 1 cut(s) 9
BspANI GGCC 3 cut(s) 5, 208, 773
BspCNI CTCAG 1 cut(s) 643
BspDI ATCGAT 1 cut(s) 312
BspFNI CGCG 1 cut(s) 554
BspLI GGNNCC 1 cut(s) 720
BspPI GGATC 2 cut(s) 125, 198
BspT104I TTCGAA 3 cut(s) 369, 697, 814
BspT107I GGYRCC 1 cut(s) 718
BsrI ACTGG 2 cut(s) 109, 543
BssECI CCNNGG 2 cut(s) 9, 68
BssMI GATC 3 cut(s) 82, 130, 190
BssNI GRCGYC 1 cut(s) 719
BssT1I CCWWGG 1 cut(s) 9
Bst6I CTCTTC 2 cut(s) 377, 827
BstACI GRCGYC 1 cut(s) 719
BstBI TTCGAA 3 cut(s) 369, 697, 814
BstC8I GCNNGC 1 cut(s) 745
BstDEI CTNAG 2 cut(s) 651, 761
BstDSI CCRYGG 2 cut(s) 9, 68
BstENI CCTNNNNNAGG 1 cut(s) 339
BstF5I GGATG 1 cut(s) 506
BstFNI CGCG 1 cut(s) 554
BstH2I RGCGCY 1 cut(s) 722
BstHHI GCGC 1 cut(s) 721
BstKTI GATC 3 cut(s) 85, 133, 193
BstMBI GATC 3 cut(s) 82, 130, 190
BstMWI GCNNNNNNNGC 1 cut(s) 297
BstSCI CCNGG 1 cut(s) 583
BstUI CGCG 1 cut(s) 554
BstV1I GCAGC 2 cut(s) 433, 701
BstV2I GAAGAC 1 cut(s) 541
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
Bsu15I ATCGAT 1 cut(s) 312
BsuRI GGCC 3 cut(s) 5, 208, 773
BsuTUI ATCGAT 1 cut(s) 312
BtgI CCRYGG 2 cut(s) 9, 68
BtsCI GGATG 1 cut(s) 506
Cac8I GCNNGC 1 cut(s) 745
CfoI GCGC 1 cut(s) 721
ClaI ATCGAT 1 cut(s) 312
Csp6I GTAC 1 cut(s) 154
CviAII CATG 3 cut(s) 10, 183, 734
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 2 cut(s) 651, 761
DinI GGCGCC 1 cut(s) 720
DpnI GATC 3 cut(s) 84, 132, 192
DpnII GATC 3 cut(s) 82, 130, 190
EaeI YGGCCR 1 cut(s) 771
Eam1104I CTCTTC 2 cut(s) 377, 827
EarI CTCTTC 2 cut(s) 377, 827
Eco130I CCWWGG 1 cut(s) 9
Eco57I CTGAAG 1 cut(s) 773
EcoNI CCTNNNNNAGG 1 cut(s) 339
EcoRI GAATTC 1 cut(s) 776
EcoT14I CCWWGG 1 cut(s) 9
EgeI GGCGCC 1 cut(s) 720
EheI GGCGCC 1 cut(s) 720
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 3 cut(s) 13, 186, 737
FaqI GGGAC 1 cut(s) 405
FatI CATG 3 cut(s) 9, 182, 733
Fnu4HI GCNGC 2 cut(s) 447, 690
FokI GGATG 1 cut(s) 513
Fsp4HI GCNGC 2 cut(s) 447, 690
FspBI CTAG 3 cut(s) 80, 105, 204
GlaI GCGC 1 cut(s) 720
GluI GCNGC 2 cut(s) 447, 690
GsuI CTGGAG 1 cut(s) 280
HaeII RGCGCY 1 cut(s) 722
HaeIII GGCC 3 cut(s) 5, 208, 773
HapII CCGG 1 cut(s) 584
HhaI GCGC 1 cut(s) 721
Hin1I GRCGYC 1 cut(s) 719
Hin1II CATG 3 cut(s) 13, 186, 737
Hin6I GCGC 1 cut(s) 719
HinP1I GCGC 1 cut(s) 719
HindIII AAGCTT 1 cut(s) 755
HinfI GANTC 3 cut(s) 211, 268, 569
HpaII CCGG 1 cut(s) 584
HphI GGTGA 3 cut(s) 43, 443, 610
Hpy188III TCNNGA 3 cut(s) 124, 272, 464
Hpy99I CGWCG 1 cut(s) 635
HpyAV CCTTC 4 cut(s) 99, 422, 521, 631
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 2 cut(s) 119, 291
HpyF10VI GCNNNNNNNGC 1 cut(s) 297
HpyF3I CTNAG 2 cut(s) 651, 761
HpySE526I ACGT 1 cut(s) 399
Hsp92I GRCGYC 1 cut(s) 719
Hsp92II CATG 3 cut(s) 13, 186, 737
HspAI GCGC 1 cut(s) 719
KasI GGCGCC 1 cut(s) 718
Kzo9I GATC 3 cut(s) 82, 130, 190
LmnI GCTCC 1 cut(s) 647
LpnPI CCDG 7 cut(s) 122, 207, 310, 524, 597, 617, 764
Lsp1109I GCAGC 2 cut(s) 433, 701
LweI GCATC 3 cut(s) 220, 300, 469
MaeI CTAG 3 cut(s) 80, 105, 204
MaeII ACGT 1 cut(s) 399
MaeIII GTNAC 2 cut(s) 19, 34
MalI GATC 3 cut(s) 84, 132, 192
MboI GATC 3 cut(s) 82, 130, 190
MboII GAAGA 8 cut(s) 277, 358, 383, 394, 546, 772, 814, 817
MflI RGATCY 1 cut(s) 82
Mly113I GGCGCC 1 cut(s) 719
MnlI CCTC 8 cut(s) 16, 262, 335, 491, 524, 549, 581, 830
MseI TTAA 6 cut(s) 15, 281, 402, 453, 579, 608
MspI CCGG 1 cut(s) 584
MspR9I CCNGG 1 cut(s) 585
Mva1269I GAATGC 1 cut(s) 121
MvnI CGCG 1 cut(s) 554
MwoI GCNNNNNNNGC 1 cut(s) 297
NarI GGCGCC 1 cut(s) 719
NciI CCSGG 1 cut(s) 585
NcoI CCATGG 1 cut(s) 9
NdeII GATC 3 cut(s) 82, 130, 190
NlaIII CATG 3 cut(s) 13, 186, 737
NlaIV GGNNCC 1 cut(s) 720
NspV TTCGAA 3 cut(s) 369, 697, 814
PctI GAATGC 1 cut(s) 121
PfeI GAWTC 3 cut(s) 211, 268, 569
PflMI CCANNNNNTGG 1 cut(s) 739
PkrI GCNGC 2 cut(s) 448, 691
PluTI GGCGCC 1 cut(s) 722
PsiI TTATAA 1 cut(s) 545
Psp1406I AACGTT 1 cut(s) 399
PspN4I GGNNCC 1 cut(s) 720
PsuI RGATCY 1 cut(s) 82
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SaqAI TTAA 6 cut(s) 15, 281, 402, 453, 579, 608
SatI GCNGC 2 cut(s) 447, 690
Sau3AI GATC 3 cut(s) 82, 130, 190
ScrFI CCNGG 1 cut(s) 585
SfaNI GCATC 3 cut(s) 220, 300, 469
SfoI GGCGCC 1 cut(s) 720
SfuI TTCGAA 3 cut(s) 369, 697, 814
SspDI GGCGCC 1 cut(s) 718
SspMI CTAG 3 cut(s) 80, 105, 204
StyD4I CCNGG 1 cut(s) 583
StyI CCWWGG 1 cut(s) 9
TaiI ACGT 1 cut(s) 402
TaqI TCGA 7 cut(s) 193, 312, 340, 369, 630, 697, 814
TfiI GAWTC 3 cut(s) 211, 268, 569
Tru1I TTAA 6 cut(s) 15, 281, 402, 453, 579, 608
Tru9I TTAA 6 cut(s) 15, 281, 402, 453, 579, 608
TseI GCWGC 2 cut(s) 446, 689
TspDTI ATGAA 4 cut(s) 171, 254, 528, 540
Van91I CCANNNNNTGG 1 cut(s) 739
XagI CCTNNNNNAGG 1 cut(s) 339
XapI RAATTY 8 cut(s) 56, 242, 483, 515, 635, 699, 776, 810
XspI CTAG 3 cut(s) 80, 105, 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.