RchiOBHm_Chr7g0196861

PPR repeat family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0013555
Physical Location & Seq
Reverse (-)
14823642 .. 14824647
1006 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17610

Sequence Viewer

Length: 624 bp
ATGGCTGCCGTTGTCAATCTCTCCAGCATTGCACCGAGTCAGAGAATGTGCTCCAAACCTATGGCCGGACCGGCCATTGGTTCCTTAACGATCAAAAGGACATGCAAGTTTGTTCGGCAGAACAGAGCTGACGCAAAGCCGCATGGCATCTATGTCAAAAGGAAGGCAGAAAAAAACCTCTCCAACATCAGCGGGCTCTTTCCTATCATGGCTGCAAGAACAATTTCAACTTTTTCTTCGGGATCGCTCTCCCCATCCGACATGATCAATGACTTCTACAAATGCATCAATGAGAAAAACTTGAAGCAACTAGGTCACTACATCTCAAGTGAGTGTTGCATAGAGGAATGCTCCTTTAGCACACCATTACAAGGCAAAAAGGTAATAATGAACTTCTTTGAAGAGCTAACTGCAGCCATGGGCAATAATATAAAGTTCAGCATACAACATGTGTGCGAAGGAGGTGATCAGCTTACAGCAGCAGCAAACTGGCACATGGAATGGAAAAACAAACAGATCCCATTCACCAGAGGCTGCAGCTTCTTTGAATACTCAAAAGAAGGAGAAAAACTAATTATCAAGTACACAAATAAATTCAGCATCTTGACCTCTAACTTGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

207

Amino Acids

23.1

Weight (kDa)

9.27

Isoelectric Point (pI)

44.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SnoaL_2 PF12680 90 - 188 2.4e-07 SnoaL-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013555)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41470
fragaria_vesca FvH4_5g03000
malus_domestica MD06G1089000.v1.1
prunus_persica Prupe.5G104900_v2.0.a1 Prupe.5G104900_v2.0.a1 Prupe.5G104900_v2.0.a1
pyrus_communis pycom06g08500
rosa_chinensis RchiOBHm_Chr7g0196861
rosa_laevigata RLG00000003983
rosa_multiflora Rmu_sc0001083.1_g000018
rosa_roxburghii Rroxscaffold_3G00258900
rosa_rugosa Rorug07G0036200 Rorug07G0036300
rosa_samantha Rh7AG160800 Rh7BG162700 Rh7CG169100 Rh7DG162200
rosa_wichuraiana Rw7G014060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 140, 192
AclWI GGATC 2 cut(s) 250, 511
AcoI YGGCCR 2 cut(s) 63, 72
AcsI RAATTY 1 cut(s) 593
AfaI GTAC 1 cut(s) 584
AfiI CCNNNNNNNGG 3 cut(s) 65, 77, 371
AflIII ACRYGT 1 cut(s) 448
AgsI TTSAA 4 cut(s) 228, 304, 401, 548
AluBI AGCT 4 cut(s) 128, 406, 472, 540
AluI AGCT 4 cut(s) 128, 406, 472, 540
Alw21I GWGCWC 1 cut(s) 53
AlwI GGATC 2 cut(s) 250, 511
AlwNI CAGNNNCTG 1 cut(s) 534
AoxI GGCC 2 cut(s) 63, 72
ApeKI GCWGC 7 cut(s) 5, 212, 413, 479, 482, 534, 537
ApoI RAATTY 1 cut(s) 593
Asp700I GAANNNNTTC 1 cut(s) 223
AspS9I GGNCC 1 cut(s) 68
AsuHPI GGTGA 2 cut(s) 476, 517
AvaII GGWCC 1 cut(s) 68
BanII GRGCYC 1 cut(s) 198
Bbv12I GWGCWC 1 cut(s) 53
BbvI GCAGC 6 cut(s) 199, 425, 491, 494, 521, 549
BccI CCATC 1 cut(s) 262
BclI TGATCA 2 cut(s) 264, 466
BfaI CTAG 1 cut(s) 311
BfmI CTRYAG 2 cut(s) 411, 535
BglI GCCNNNNNGGC 1 cut(s) 71
BisI GCNGC 8 cut(s) 6, 140, 213, 414, 480, 483, 535, 538
BlsI GCNGC 8 cut(s) 7, 141, 214, 415, 481, 484, 536, 539
Bme18I GGWCC 1 cut(s) 68
BmgT120I GGNCC 1 cut(s) 68
BmiI GGNNCC 1 cut(s) 82
BmsI GCATC 3 cut(s) 156, 294, 609
BplI GAGNNNNNCTC 2 cut(s) 335, 367
BpmI CTGGAG 1 cut(s) 7
BpuEI CTTGAG 1 cut(s) 310
BsaJI CCNNGG 1 cut(s) 417
Bsc4I CCNNNNNNNGG 3 cut(s) 65, 77, 371
Bse118I RCCGGY 1 cut(s) 70
Bse1I ACTGG 1 cut(s) 494
Bse3DI GCAATG 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 417
BseGI GGATG 1 cut(s) 254
BseLI CCNNNNNNNGG 3 cut(s) 65, 77, 371
BseMI GCAATG 1 cut(s) 27
BseNI ACTGG 1 cut(s) 494
BseXI GCAGC 6 cut(s) 199, 425, 491, 494, 521, 549
BshFI GGCC 2 cut(s) 65, 74
BsiHKAI GWGCWC 1 cut(s) 53
BsiSI CCGG 2 cut(s) 66, 71
BslI CCNNNNNNNGG 3 cut(s) 65, 77, 371
BsmI GAATGC 1 cut(s) 353
BsnI GGCC 2 cut(s) 65, 74
Bsp1286I GDGCHC 2 cut(s) 53, 198
Bsp143I GATC 5 cut(s) 90, 242, 264, 466, 516
Bsp19I CCATGG 1 cut(s) 417
BspACI CCGC 2 cut(s) 140, 192
BspANI GGCC 2 cut(s) 65, 74
BspLI GGNNCC 1 cut(s) 82
BspMAI CTGCAG 2 cut(s) 415, 539
BspPI GGATC 2 cut(s) 250, 511
BspQI GCTCTTC 1 cut(s) 396
BsrDI GCAATG 1 cut(s) 27
BsrFI RCCGGY 1 cut(s) 70
BsrI ACTGG 1 cut(s) 494
BssAI RCCGGY 1 cut(s) 70
BssECI CCNNGG 1 cut(s) 417
BssMI GATC 5 cut(s) 90, 242, 264, 466, 516
BssT1I CCWWGG 1 cut(s) 417
Bst6I CTCTTC 1 cut(s) 396
BstC8I GCNNGC 1 cut(s) 194
BstDSI CCRYGG 1 cut(s) 417
BstF5I GGATG 1 cut(s) 254
BstKTI GATC 5 cut(s) 93, 245, 267, 469, 519
BstMBI GATC 5 cut(s) 90, 242, 264, 466, 516
BstMWI GCNNNNNNNGC 2 cut(s) 71, 357
BstNSI RCATGY 2 cut(s) 105, 452
BstSFI CTRYAG 2 cut(s) 411, 535
BstV1I GCAGC 6 cut(s) 199, 425, 491, 494, 521, 549
BstX2I RGATCY 1 cut(s) 516
BstXI CCANNNNNNTGG 1 cut(s) 61
BstYI RGATCY 1 cut(s) 516
BsuRI GGCC 2 cut(s) 65, 74
BtgI CCRYGG 1 cut(s) 417
BtsCI GGATG 1 cut(s) 254
Cac8I GCNNGC 1 cut(s) 194
CaiI CAGNNNCTG 1 cut(s) 534
Cfr10I RCCGGY 1 cut(s) 70
Cfr13I GGNCC 1 cut(s) 68
CpoI CGGWCCG 1 cut(s) 68
CseI GACGC 1 cut(s) 140
Csp6I GTAC 1 cut(s) 583
CspI CGGWCCG 1 cut(s) 68
CviAII CATG 7 cut(s) 102, 143, 208, 262, 418, 449, 496
CviQI GTAC 1 cut(s) 583
DpnI GATC 5 cut(s) 92, 244, 266, 468, 518
DpnII GATC 5 cut(s) 90, 242, 264, 466, 516
EaeI YGGCCR 2 cut(s) 63, 72
Eam1104I CTCTTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 396
Eco130I CCWWGG 1 cut(s) 417
Eco24I GRGCYC 1 cut(s) 198
Eco47I GGWCC 1 cut(s) 68
EcoT14I CCWWGG 1 cut(s) 417
EcoT22I ATGCAT 1 cut(s) 287
EcoT38I GRGCYC 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 417
FaeI CATG 7 cut(s) 105, 146, 211, 265, 421, 452, 499
FatI CATG 7 cut(s) 101, 142, 207, 261, 417, 448, 495
FauI CCCGC 1 cut(s) 185
FbaI TGATCA 2 cut(s) 264, 466
Fnu4HI GCNGC 8 cut(s) 6, 140, 213, 414, 480, 483, 535, 538
FokI GGATG 1 cut(s) 241
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 8 cut(s) 6, 140, 213, 414, 480, 483, 535, 538
FspBI CTAG 1 cut(s) 311
GluI GCNGC 8 cut(s) 6, 140, 213, 414, 480, 483, 535, 538
GsuI CTGGAG 1 cut(s) 7
HaeIII GGCC 2 cut(s) 65, 74
HapII CCGG 2 cut(s) 66, 71
HgaI GACGC 1 cut(s) 140
Hin1II CATG 7 cut(s) 105, 146, 211, 265, 421, 452, 499
HinfI GANTC 1 cut(s) 37
HpaII CCGG 2 cut(s) 66, 71
HphI GGTGA 2 cut(s) 476, 517
Hpy166II GTNNAC 1 cut(s) 585
Hpy188I TCNGA 2 cut(s) 42, 259
Hpy188III TCNNGA 2 cut(s) 240, 604
Hpy8I GTNNAC 1 cut(s) 585
HpyAV CCTTC 3 cut(s) 157, 452, 554
HpyCH4V TGCA 7 cut(s) 32, 105, 215, 285, 339, 413, 537
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 357
Hsp92II CATG 7 cut(s) 105, 146, 211, 265, 421, 452, 499
Ksp22I TGATCA 2 cut(s) 264, 466
Kzo9I GATC 5 cut(s) 90, 242, 264, 466, 516
LguI GCTCTTC 1 cut(s) 396
LmnI GCTCC 2 cut(s) 56, 356
LpnPI CCDG 5 cut(s) 37, 79, 84, 475, 541
Lsp1109I GCAGC 6 cut(s) 199, 425, 491, 494, 521, 549
LweI GCATC 3 cut(s) 156, 294, 609
MaeI CTAG 1 cut(s) 311
MaeIII GTNAC 1 cut(s) 314
MalI GATC 5 cut(s) 92, 244, 266, 468, 518
MboI GATC 5 cut(s) 90, 242, 264, 466, 516
MboII GAAGA 2 cut(s) 228, 413
MflI RGATCY 1 cut(s) 516
MhlI GDGCHC 2 cut(s) 53, 198
MluCI AATT 3 cut(s) 222, 573, 593
MlyI GAGTC 1 cut(s) 46
MmeI TCCRAC 2 cut(s) 207, 282
MnlI CCTC 5 cut(s) 188, 337, 455, 524, 619
Mph1103I ATGCAT 1 cut(s) 287
MroXI GAANNNNTTC 1 cut(s) 223
MseI TTAA 2 cut(s) 86, 622
MspA1I CMGCKG 1 cut(s) 192
MspI CCGG 2 cut(s) 66, 71
Mva1269I GAATGC 1 cut(s) 353
MwoI GCNNNNNNNGC 2 cut(s) 71, 357
NcoI CCATGG 1 cut(s) 417
NdeII GATC 5 cut(s) 90, 242, 264, 466, 516
NlaIII CATG 7 cut(s) 105, 146, 211, 265, 421, 452, 499
NlaIV GGNNCC 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 314
NsiI ATGCAT 1 cut(s) 287
NspI RCATGY 2 cut(s) 105, 452
PciI ACATGT 1 cut(s) 448
PciSI GCTCTTC 1 cut(s) 396
PctI GAATGC 1 cut(s) 353
PdmI GAANNNNTTC 1 cut(s) 223
PkrI GCNGC 8 cut(s) 7, 141, 214, 415, 481, 484, 536, 539
PleI GAGTC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 45
PscI ACATGT 1 cut(s) 448
PspN4I GGNNCC 1 cut(s) 82
PspPI GGNCC 1 cut(s) 68
PstI CTGCAG 2 cut(s) 415, 539
PstNI CAGNNNCTG 1 cut(s) 534
PsuI RGATCY 1 cut(s) 516
RsaI GTAC 1 cut(s) 584
RsaNI GTAC 1 cut(s) 583
Rsr2I CGGWCCG 1 cut(s) 68
RsrII CGGWCCG 1 cut(s) 68
SapI GCTCTTC 1 cut(s) 396
SaqAI TTAA 2 cut(s) 86, 622
SatI GCNGC 8 cut(s) 6, 140, 213, 414, 480, 483, 535, 538
Sau3AI GATC 5 cut(s) 90, 242, 264, 466, 516
Sau96I GGNCC 1 cut(s) 68
SchI GAGTC 1 cut(s) 46
SduI GDGCHC 2 cut(s) 53, 198
SfaNI GCATC 3 cut(s) 156, 294, 609
SfcI CTRYAG 2 cut(s) 411, 535
SfiI GGCCNNNNNGGCC 1 cut(s) 71
SinI GGWCC 1 cut(s) 68
SmlI CTYRAG 1 cut(s) 325
SmoI CTYRAG 1 cut(s) 325
Sse9I AATT 3 cut(s) 222, 573, 593
SsiI CCGC 2 cut(s) 140, 192
SspMI CTAG 1 cut(s) 311
StyI CCWWGG 1 cut(s) 417
TasI AATT 3 cut(s) 222, 573, 593
TatI WGTACW 1 cut(s) 582
TauI GCSGC 1 cut(s) 142
Tru1I TTAA 2 cut(s) 86, 622
Tru9I TTAA 2 cut(s) 86, 622
TseFI GTSAC 1 cut(s) 314
TseI GCWGC 7 cut(s) 5, 212, 413, 479, 482, 534, 537
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 1 cut(s) 404
VpaK11BI GGWCC 1 cut(s) 68
XapI RAATTY 1 cut(s) 593
XceI RCATGY 2 cut(s) 105, 452
XmnI GAANNNNTTC 1 cut(s) 223
XspI CTAG 1 cut(s) 311
Zsp2I ATGCAT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.