FvH4_5g03000

PPR repeat family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0013555
Physical Location & Seq
Forward (+)
1801132 .. 1802500
1369 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g03000.t1

Sequence Viewer

Length: 867 bp
ATGGCTACCGTTGTCAATTTCCCAAACATCGCACCATGTCGGACACTGTGTCGGAGAACGCTCCTCAAACCTATGGCAGGACCGGCCGTCGGTTCCTTACCGATCAAAAGAACATGTAAGTTTGTTCAGCAGAGCAGAGCCGACGCAAAGAAGCATAGCACCTATGTCAAAAATCAGGCAGAAAATAAACTCCCCAGCATCCGCGCGCTGCTTCCTATCATGGCTGCAAAGGGAAATTCAACTTTTTCTTCAGGGTCACTTTCCCCATCCGAGACAATCAATGACTTCTACAAATGCGTCAATGAGAAAAACTTGAAGCAACTAAGTCACTACATCTCAACTGATTGCTACATTGAGGAGTGCTCCTTTAGCACACCATTACAAGGCAAAAAGGTAATAATGAAGTTCTTTGAAGAGTTAACTGAGGCCATGGGCAAAAATATAAAGTTCAGCATACGAATTGTGTGTGAAGGAAATGATCAGCTTACAGCAGCAGCAAACTGGCACATGGAATGGAAAGACAAGCAGATCCCATTCACCAGAGGCTGCAGTTTCTTTGAATGCTCAACAGAAGGAGGGAAACTAATTATCAAGAAGGCACAGATTGTCATTGAATCACCGATCAAGCCAGGACACCTAGTACTGAGTCTCTTGAAGGCAGTGACCTCTCTATTTGATGGTTTCCCAAGAGCTACTGAATGGTTCCTAAGAAGTCCTCATATTGTCTTCCAATGGATATGGAGGATATACAAAATTATGTTTGCACCCATCATAGAAGGCTACATAGGGCTCTGGAACATGGCAATTCGATTGCTCAGCTATGCATACAACATTTTGCTTTACATTTCAAACATATTCTTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

289

Amino Acids

32.76

Weight (kDa)

9.5

Isoelectric Point (pI)

52.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SnoaL_2 PF12680 94 - 194 1.7e-06 SnoaL-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013555)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41470
fragaria_vesca FvH4_5g03000
malus_domestica MD06G1089000.v1.1
prunus_persica Prupe.5G104900_v2.0.a1 Prupe.5G104900_v2.0.a1 Prupe.5G104900_v2.0.a1
pyrus_communis pycom06g08500
rosa_chinensis RchiOBHm_Chr7g0196861
rosa_laevigata RLG00000003983
rosa_multiflora Rmu_sc0001083.1_g000018
rosa_roxburghii Rroxscaffold_3G00258900
rosa_rugosa Rorug07G0036200 Rorug07G0036300
rosa_samantha Rh7AG160800 Rh7BG162700 Rh7CG169100 Rh7DG162200
rosa_wichuraiana Rw7G014060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 204, 206
AciI CCGC 1 cut(s) 202
AclWI GGATC 1 cut(s) 523
AcoI YGGCCR 1 cut(s) 84
AcsI RAATTY 1 cut(s) 235
AcuI CTGAAG 1 cut(s) 234
AfaI GTAC 1 cut(s) 642
AfiI CCNNNNNNNGG 3 cut(s) 77, 89, 383
AflIII ACRYGT 1 cut(s) 113
AgsI TTSAA 8 cut(s) 240, 316, 413, 560, 614, 655, 849, 862
AhdI GACNNNNNGTC 2 cut(s) 48, 86
AjnI CCWGG 1 cut(s) 628
AluBI AGCT 3 cut(s) 484, 692, 819
AluI AGCT 3 cut(s) 484, 692, 819
Alw21I GWGCWC 1 cut(s) 365
Alw26I GTCTC 2 cut(s) 266, 653
AlwI GGATC 1 cut(s) 523
AlwNI CAGNNNCTG 1 cut(s) 546
AoxI GGCC 2 cut(s) 84, 426
ApeKI GCWGC 5 cut(s) 208, 224, 491, 494, 546
ApoI RAATTY 1 cut(s) 235
AspLEI GCGC 2 cut(s) 206, 208
AspS9I GGNCC 1 cut(s) 80
AsuHPI GGTGA 2 cut(s) 529, 609
AvaII GGWCC 1 cut(s) 80
BanII GRGCYC 1 cut(s) 792
BbsI GAAGAC 1 cut(s) 718
Bbv12I GWGCWC 1 cut(s) 365
BbvI GCAGC 5 cut(s) 195, 211, 503, 506, 533
BccI CCATC 3 cut(s) 274, 671, 776
BceAI ACGGC 1 cut(s) 71
BciT130I CCWGG 1 cut(s) 630
BclI TGATCA 1 cut(s) 478
BcoDI GTCTC 2 cut(s) 266, 653
BfaI CTAG 1 cut(s) 638
BfmI CTRYAG 1 cut(s) 547
BisI GCNGC 5 cut(s) 209, 225, 492, 495, 547
BlpI GCTNAGC 1 cut(s) 815
BlsI GCNGC 5 cut(s) 210, 226, 493, 496, 548
BmcAI AGTACT 1 cut(s) 642
Bme1390I CCNGG 1 cut(s) 630
Bme18I GGWCC 1 cut(s) 80
BmeRI GACNNNNNGTC 2 cut(s) 48, 86
BmgT120I GGNCC 1 cut(s) 80
BmiI GGNNCC 2 cut(s) 94, 704
BmrFI CCNGG 1 cut(s) 630
BmsI GCATC 1 cut(s) 207
BpiI GAAGAC 1 cut(s) 718
BplI GAGNNNNNCTC 2 cut(s) 347, 379
Bpu1102I GCTNAGC 1 cut(s) 815
BsaJI CCNNGG 1 cut(s) 429
Bsc4I CCNNNNNNNGG 3 cut(s) 77, 89, 383
Bse118I RCCGGY 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 506
BseBI CCWGG 1 cut(s) 630
BseDI CCNNGG 1 cut(s) 429
BseGI GGATG 2 cut(s) 198, 266
BseLI CCNNNNNNNGG 3 cut(s) 77, 89, 383
BseMII CTCAG 3 cut(s) 414, 635, 829
BseNI ACTGG 1 cut(s) 506
BsePI GCGCGC 1 cut(s) 204
BseRI GAGGAG 2 cut(s) 53, 371
BseX3I CGGCCG 1 cut(s) 84
BseXI GCAGC 5 cut(s) 195, 211, 503, 506, 533
BseYI CCCAGC 1 cut(s) 194
Bsh1236I CGCG 2 cut(s) 204, 206
Bsh1285I CGRYCG 1 cut(s) 87
BshFI GGCC 2 cut(s) 86, 428
BsiEI CGRYCG 1 cut(s) 87
BsiHKAI GWGCWC 1 cut(s) 365
BsiSI CCGG 1 cut(s) 83
BslI CCNNNNNNNGG 3 cut(s) 77, 89, 383
BsmAI GTCTC 2 cut(s) 266, 653
BsmI GAATGC 1 cut(s) 566
BsnI GGCC 2 cut(s) 86, 428
Bsp1286I GDGCHC 2 cut(s) 365, 792
Bsp143I GATC 4 cut(s) 102, 478, 528, 621
Bsp1720I GCTNAGC 1 cut(s) 815
Bsp19I CCATGG 1 cut(s) 429
BspACI CCGC 1 cut(s) 202
BspANI GGCC 2 cut(s) 86, 428
BspCNI CTCAG 3 cut(s) 415, 636, 828
BspFNI CGCG 2 cut(s) 204, 206
BspLI GGNNCC 2 cut(s) 94, 704
BspMAI CTGCAG 1 cut(s) 551
BspPI GGATC 1 cut(s) 523
BsrFI RCCGGY 1 cut(s) 82
BsrI ACTGG 1 cut(s) 506
BssAI RCCGGY 1 cut(s) 82
BssECI CCNNGG 1 cut(s) 429
BssHII GCGCGC 1 cut(s) 204
BssMI GATC 4 cut(s) 102, 478, 528, 621
BssT1I CCWWGG 1 cut(s) 429
Bst2UI CCWGG 1 cut(s) 630
Bst4CI ACNGT 2 cut(s) 10, 48
Bst6I CTCTTC 1 cut(s) 408
BstC8I GCNNGC 1 cut(s) 206
BstDEI CTNAG 5 cut(s) 323, 423, 644, 707, 815
BstDSI CCRYGG 1 cut(s) 429
BstENI CCTNNNNNAGG 1 cut(s) 75
BstF5I GGATG 2 cut(s) 198, 266
BstFNI CGCG 2 cut(s) 204, 206
BstHHI GCGC 2 cut(s) 206, 208
BstKTI GATC 4 cut(s) 105, 481, 531, 624
BstMAI GTCTC 2 cut(s) 266, 653
BstMBI GATC 4 cut(s) 102, 478, 528, 621
BstMCI CGRYCG 1 cut(s) 87
BstMWI GCNNNNNNNGC 2 cut(s) 83, 369
BstNI CCWGG 1 cut(s) 630
BstNSI RCATGY 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 628
BstSFI CTRYAG 1 cut(s) 547
BstUI CGCG 2 cut(s) 204, 206
BstV1I GCAGC 5 cut(s) 195, 211, 503, 506, 533
BstV2I GAAGAC 1 cut(s) 718
BstX2I RGATCY 1 cut(s) 528
BstYI RGATCY 1 cut(s) 528
BstZI CGGCCG 1 cut(s) 84
BsuRI GGCC 2 cut(s) 86, 428
BtgI CCRYGG 1 cut(s) 429
BtgZI GCGATG 1 cut(s) 13
BtsCI GGATG 2 cut(s) 198, 266
BtsI GCAGTG 1 cut(s) 666
BtsIMutI CAGTG 2 cut(s) 44, 666
Cac8I GCNNGC 1 cut(s) 206
CaiI CAGNNNCTG 1 cut(s) 546
CfoI GCGC 2 cut(s) 206, 208
Cfr10I RCCGGY 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 80
CseI GACGC 2 cut(s) 152, 286
Csp6I GTAC 1 cut(s) 641
CviAII CATG 6 cut(s) 36, 114, 220, 430, 508, 799
CviQI GTAC 1 cut(s) 641
DdeI CTNAG 5 cut(s) 323, 423, 644, 707, 815
DpnI GATC 4 cut(s) 104, 480, 530, 623
DpnII GATC 4 cut(s) 102, 478, 528, 621
DriI GACNNNNNGTC 2 cut(s) 48, 86
EaeI YGGCCR 1 cut(s) 84
EagI CGGCCG 1 cut(s) 84
Eam1104I CTCTTC 1 cut(s) 408
Eam1105I GACNNNNNGTC 2 cut(s) 48, 86
EarI CTCTTC 1 cut(s) 408
EclXI CGGCCG 1 cut(s) 84
Eco130I CCWWGG 1 cut(s) 429
Eco24I GRGCYC 1 cut(s) 792
Eco47I GGWCC 1 cut(s) 80
Eco52I CGGCCG 1 cut(s) 84
Eco57I CTGAAG 1 cut(s) 234
EcoNI CCTNNNNNAGG 1 cut(s) 75
EcoRII CCWGG 1 cut(s) 628
EcoT14I CCWWGG 1 cut(s) 429
EcoT22I ATGCAT 1 cut(s) 826
EcoT38I GRGCYC 1 cut(s) 792
ErhI CCWWGG 1 cut(s) 429
FaeI CATG 6 cut(s) 39, 117, 223, 433, 511, 802
FatI CATG 6 cut(s) 35, 113, 219, 429, 507, 798
FbaI TGATCA 1 cut(s) 478
Fnu4HI GCNGC 5 cut(s) 209, 225, 492, 495, 547
FokI GGATG 2 cut(s) 185, 253
FriOI GRGCYC 1 cut(s) 792
Fsp4HI GCNGC 5 cut(s) 209, 225, 492, 495, 547
FspBI CTAG 1 cut(s) 638
GlaI GCGC 2 cut(s) 205, 207
GluI GCNGC 5 cut(s) 209, 225, 492, 495, 547
GsaI CCCAGC 1 cut(s) 198
HaeIII GGCC 2 cut(s) 86, 428
HapII CCGG 1 cut(s) 83
HgaI GACGC 2 cut(s) 152, 286
HhaI GCGC 2 cut(s) 206, 208
Hin1II CATG 6 cut(s) 39, 117, 223, 433, 511, 802
Hin6I GCGC 2 cut(s) 204, 206
HinP1I GCGC 2 cut(s) 204, 206
HincII GTYRAC 1 cut(s) 420
HindII GTYRAC 1 cut(s) 420
HinfI GANTC 2 cut(s) 614, 646
HpaI GTTAAC 1 cut(s) 420
HpaII CCGG 1 cut(s) 83
HphI GGTGA 2 cut(s) 529, 609
Hpy166II GTNNAC 1 cut(s) 420
Hpy188I TCNGA 3 cut(s) 42, 54, 271
Hpy188III TCNNGA 3 cut(s) 592, 652, 793
Hpy8I GTNNAC 1 cut(s) 420
Hpy99I CGWCG 2 cut(s) 92, 146
HpyAV CCTTC 5 cut(s) 464, 566, 589, 649, 770
HpyCH4III ACNGT 2 cut(s) 10, 48
HpyCH4V TGCA 4 cut(s) 227, 549, 764, 824
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 369
HpyF3I CTNAG 5 cut(s) 323, 423, 644, 707, 815
Hsp92II CATG 6 cut(s) 39, 117, 223, 433, 511, 802
HspAI GCGC 2 cut(s) 204, 206
Ksp22I TGATCA 1 cut(s) 478
KspAI GTTAAC 1 cut(s) 420
Kzo9I GATC 4 cut(s) 102, 478, 528, 621
LmnI GCTCC 2 cut(s) 66, 368
Lsp1109I GCAGC 5 cut(s) 195, 211, 503, 506, 533
LweI GCATC 1 cut(s) 207
MaeI CTAG 1 cut(s) 638
MaeIII GTNAC 3 cut(s) 255, 326, 661
MalI GATC 4 cut(s) 104, 480, 530, 623
MboI GATC 4 cut(s) 102, 478, 528, 621
MboII GAAGA 4 cut(s) 240, 425, 718, 850
MflI RGATCY 1 cut(s) 528
MhlI GDGCHC 2 cut(s) 365, 792
MluCI AATT 6 cut(s) 16, 235, 459, 585, 753, 804
MlyI GAGTC 1 cut(s) 655
MmeI TCCRAC 2 cut(s) 20, 32
MnlI CCTC 8 cut(s) 74, 349, 418, 536, 569, 676, 726, 735
Mph1103I ATGCAT 1 cut(s) 826
MseI TTAA 1 cut(s) 419
MspI CCGG 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 630
Mva1269I GAATGC 1 cut(s) 566
MvaI CCWGG 1 cut(s) 630
MvnI CGCG 2 cut(s) 204, 206
MwoI GCNNNNNNNGC 2 cut(s) 83, 369
NcoI CCATGG 1 cut(s) 429
NdeII GATC 4 cut(s) 102, 478, 528, 621
NlaIII CATG 6 cut(s) 39, 117, 223, 433, 511, 802
NlaIV GGNNCC 2 cut(s) 94, 704
NmuCI GTSAC 3 cut(s) 255, 326, 661
NsiI ATGCAT 1 cut(s) 826
NspI RCATGY 1 cut(s) 117
PauI GCGCGC 1 cut(s) 204
PciI ACATGT 1 cut(s) 113
PctI GAATGC 1 cut(s) 566
PfeI GAWTC 1 cut(s) 614
PkrI GCNGC 5 cut(s) 210, 226, 493, 496, 548
PleI GAGTC 1 cut(s) 654
PpsI GAGTC 1 cut(s) 654
PscI ACATGT 1 cut(s) 113
Psp6I CCWGG 1 cut(s) 628
PspFI CCCAGC 1 cut(s) 194
PspGI CCWGG 1 cut(s) 628
PspN4I GGNNCC 2 cut(s) 94, 704
PspPI GGNCC 1 cut(s) 80
PstI CTGCAG 1 cut(s) 551
PstNI CAGNNNCTG 1 cut(s) 546
PsuI RGATCY 1 cut(s) 528
PteI GCGCGC 1 cut(s) 204
RsaI GTAC 1 cut(s) 642
RsaNI GTAC 1 cut(s) 641
SaqAI TTAA 1 cut(s) 419
SatI GCNGC 5 cut(s) 209, 225, 492, 495, 547
Sau3AI GATC 4 cut(s) 102, 478, 528, 621
Sau96I GGNCC 1 cut(s) 80
ScaI AGTACT 1 cut(s) 642
SchI GAGTC 1 cut(s) 655
ScrFI CCNGG 1 cut(s) 630
SduI GDGCHC 2 cut(s) 365, 792
SetI ASST 8 cut(s) 73, 164, 396, 486, 639, 668, 694, 821
SfaNI GCATC 1 cut(s) 207
SfcI CTRYAG 1 cut(s) 547
SinI GGWCC 1 cut(s) 80
Sse9I AATT 6 cut(s) 16, 235, 459, 585, 753, 804
SsiI CCGC 1 cut(s) 202
SspMI CTAG 1 cut(s) 638
StyD4I CCNGG 1 cut(s) 628
StyI CCWWGG 1 cut(s) 429
TaaI ACNGT 2 cut(s) 10, 48
TaqI TCGA 1 cut(s) 808
TasI AATT 6 cut(s) 16, 235, 459, 585, 753, 804
TatI WGTACW 1 cut(s) 640
TfiI GAWTC 1 cut(s) 614
Tru1I TTAA 1 cut(s) 419
Tru9I TTAA 1 cut(s) 419
TscAI CASTG 2 cut(s) 51, 666
TseFI GTSAC 3 cut(s) 255, 326, 661
TseI GCWGC 5 cut(s) 208, 224, 491, 494, 546
Tsp45I GTSAC 3 cut(s) 255, 326, 661
TspDTI ATGAA 1 cut(s) 416
TspRI CASTG 2 cut(s) 51, 666
VpaK11BI GGWCC 1 cut(s) 80
XagI CCTNNNNNAGG 1 cut(s) 75
XapI RAATTY 1 cut(s) 235
XceI RCATGY 1 cut(s) 117
XspI CTAG 1 cut(s) 638
ZrmI AGTACT 1 cut(s) 642
Zsp2I ATGCAT 1 cut(s) 826
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.