Rh7DG162200

PPR repeat family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0013555
Physical Location & Seq
Reverse (-)
14433649 .. 14434044
396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG162200.1

Sequence Viewer

Length: 396 bp
ATGGCTGCCGTTGTCAATCTCTCCAGCGTTGCACCGAGTCAGAGAATGTGCTCCAAACCTATGGCCGGACCGGCCATTGGTTCCTTAACGATCAAAAGGACATGCAAGTTTGTTCGGCAGAACAGAGCTGACGCAAAGCCGCATGGCATCTATGTCAAAAGGAAGGCAGAAAAAAACCTCTCCAACATCAGCGGGCTCTTTCCTATCGTGGCTGCAAGAAGAATTTCAACTTTTTCTTCGGGATCGCTCTCCCCATCCGACATGATCAATGACTTCTACAAATGCATCAATGAGAAAAACTTGAAGCAACTAGGTCACTACATCTCAAGTGAGTGTTGCATAGAGGAATGCTCCTTTAGCACACCATTACAAGGCAAAAAGGTCATCATCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

131

Amino Acids

14.34

Weight (kDa)

9.7

Isoelectric Point (pI)

59.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013555)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41470
fragaria_vesca FvH4_5g03000
malus_domestica MD06G1089000.v1.1
prunus_persica Prupe.5G104900_v2.0.a1 Prupe.5G104900_v2.0.a1 Prupe.5G104900_v2.0.a1
pyrus_communis pycom06g08500
rosa_chinensis RchiOBHm_Chr7g0196861
rosa_laevigata RLG00000003983
rosa_multiflora Rmu_sc0001083.1_g000018
rosa_roxburghii Rroxscaffold_3G00258900
rosa_rugosa Rorug07G0036200 Rorug07G0036300
rosa_samantha Rh7AG160800 Rh7BG162700 Rh7CG169100 Rh7DG162200
rosa_wichuraiana Rw7G014060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 140, 192
AclWI GGATC 1 cut(s) 250
AcoI YGGCCR 2 cut(s) 63, 72
AcsI RAATTY 1 cut(s) 222
AfiI CCNNNNNNNGG 3 cut(s) 65, 77, 371
AgsI TTSAA 2 cut(s) 228, 304
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
Alw21I GWGCWC 1 cut(s) 53
AlwI GGATC 1 cut(s) 250
AoxI GGCC 2 cut(s) 63, 72
ApeKI GCWGC 2 cut(s) 5, 212
ApoI RAATTY 1 cut(s) 222
Asp700I GAANNNNTTC 1 cut(s) 223
AspS9I GGNCC 1 cut(s) 68
AvaII GGWCC 1 cut(s) 68
BanII GRGCYC 1 cut(s) 198
Bbv12I GWGCWC 1 cut(s) 53
BbvI GCAGC 1 cut(s) 199
BccI CCATC 1 cut(s) 262
BclI TGATCA 1 cut(s) 264
BfaI CTAG 2 cut(s) 311, 394
BglI GCCNNNNNGGC 1 cut(s) 71
BisI GCNGC 3 cut(s) 6, 140, 213
BlsI GCNGC 3 cut(s) 7, 141, 214
Bme18I GGWCC 1 cut(s) 68
BmgT120I GGNCC 1 cut(s) 68
BmiI GGNNCC 1 cut(s) 82
BmsI GCATC 2 cut(s) 156, 294
BplI GAGNNNNNCTC 2 cut(s) 335, 367
BpmI CTGGAG 1 cut(s) 7
BpuEI CTTGAG 1 cut(s) 310
Bsc4I CCNNNNNNNGG 3 cut(s) 65, 77, 371
Bse118I RCCGGY 1 cut(s) 70
BseGI GGATG 1 cut(s) 254
BseLI CCNNNNNNNGG 3 cut(s) 65, 77, 371
BseXI GCAGC 1 cut(s) 199
BshFI GGCC 2 cut(s) 65, 74
BsiHKAI GWGCWC 1 cut(s) 53
BsiSI CCGG 2 cut(s) 66, 71
BslI CCNNNNNNNGG 3 cut(s) 65, 77, 371
BsmI GAATGC 1 cut(s) 353
BsnI GGCC 2 cut(s) 65, 74
Bsp1286I GDGCHC 2 cut(s) 53, 198
Bsp143I GATC 3 cut(s) 90, 242, 264
BspACI CCGC 2 cut(s) 140, 192
BspANI GGCC 2 cut(s) 65, 74
BspLI GGNNCC 1 cut(s) 82
BspPI GGATC 1 cut(s) 250
BsrFI RCCGGY 1 cut(s) 70
BssAI RCCGGY 1 cut(s) 70
BssMI GATC 3 cut(s) 90, 242, 264
BstC8I GCNNGC 1 cut(s) 194
BstF5I GGATG 1 cut(s) 254
BstKTI GATC 3 cut(s) 93, 245, 267
BstMBI GATC 3 cut(s) 90, 242, 264
BstMWI GCNNNNNNNGC 2 cut(s) 71, 357
BstNSI RCATGY 1 cut(s) 105
BstV1I GCAGC 1 cut(s) 199
BstXI CCANNNNNNTGG 1 cut(s) 61
BsuRI GGCC 2 cut(s) 65, 74
BtsCI GGATG 1 cut(s) 254
Cac8I GCNNGC 1 cut(s) 194
Cfr10I RCCGGY 1 cut(s) 70
Cfr13I GGNCC 1 cut(s) 68
CpoI CGGWCCG 1 cut(s) 68
CseI GACGC 1 cut(s) 140
CspI CGGWCCG 1 cut(s) 68
CviAII CATG 3 cut(s) 102, 143, 262
CviJI RGCY 7 cut(s) 5, 65, 74, 128, 139, 196, 212
CviKI_1 RGCY 7 cut(s) 5, 65, 74, 128, 139, 196, 212
DpnI GATC 3 cut(s) 92, 244, 266
DpnII GATC 3 cut(s) 90, 242, 264
EaeI YGGCCR 2 cut(s) 63, 72
Eco24I GRGCYC 1 cut(s) 198
Eco47I GGWCC 1 cut(s) 68
EcoT22I ATGCAT 1 cut(s) 287
EcoT38I GRGCYC 1 cut(s) 198
FaeI CATG 3 cut(s) 105, 146, 265
FaiI YATR 6 cut(s) 62, 103, 144, 153, 263, 341
FatI CATG 3 cut(s) 101, 142, 261
FauI CCCGC 1 cut(s) 185
FbaI TGATCA 1 cut(s) 264
Fnu4HI GCNGC 3 cut(s) 6, 140, 213
FokI GGATG 1 cut(s) 241
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 3 cut(s) 6, 140, 213
FspBI CTAG 2 cut(s) 311, 394
GluI GCNGC 3 cut(s) 6, 140, 213
GsuI CTGGAG 1 cut(s) 7
HaeIII GGCC 2 cut(s) 65, 74
HapII CCGG 2 cut(s) 66, 71
HgaI GACGC 1 cut(s) 140
Hin1II CATG 3 cut(s) 105, 146, 265
HinfI GANTC 1 cut(s) 37
HpaII CCGG 2 cut(s) 66, 71
Hpy188I TCNGA 2 cut(s) 42, 259
Hpy188III TCNNGA 1 cut(s) 240
HpyAV CCTTC 1 cut(s) 157
HpyCH4V TGCA 5 cut(s) 32, 105, 215, 285, 339
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 357
Hsp92II CATG 3 cut(s) 105, 146, 265
Ksp22I TGATCA 1 cut(s) 264
Kzo9I GATC 3 cut(s) 90, 242, 264
LmnI GCTCC 2 cut(s) 56, 356
LpnPI CCDG 3 cut(s) 37, 79, 84
Lsp1109I GCAGC 1 cut(s) 199
LweI GCATC 2 cut(s) 156, 294
MaeI CTAG 2 cut(s) 311, 394
MaeIII GTNAC 1 cut(s) 314
MalI GATC 3 cut(s) 92, 244, 266
MboI GATC 3 cut(s) 90, 242, 264
MboII GAAGA 2 cut(s) 228, 231
MhlI GDGCHC 2 cut(s) 53, 198
MluCI AATT 1 cut(s) 222
MlyI GAGTC 1 cut(s) 46
MmeI TCCRAC 2 cut(s) 207, 282
MnlI CCTC 2 cut(s) 188, 337
Mph1103I ATGCAT 1 cut(s) 287
MroXI GAANNNNTTC 1 cut(s) 223
MseI TTAA 1 cut(s) 86
MspA1I CMGCKG 1 cut(s) 192
MspI CCGG 2 cut(s) 66, 71
Mva1269I GAATGC 1 cut(s) 353
MwoI GCNNNNNNNGC 2 cut(s) 71, 357
NdeII GATC 3 cut(s) 90, 242, 264
NlaIII CATG 3 cut(s) 105, 146, 265
NlaIV GGNNCC 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 314
NsiI ATGCAT 1 cut(s) 287
NspI RCATGY 1 cut(s) 105
PctI GAATGC 1 cut(s) 353
PdmI GAANNNNTTC 1 cut(s) 223
PkrI GCNGC 3 cut(s) 7, 141, 214
PleI GAGTC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 45
PspN4I GGNNCC 1 cut(s) 82
PspPI GGNCC 1 cut(s) 68
Rsr2I CGGWCCG 1 cut(s) 68
RsrII CGGWCCG 1 cut(s) 68
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 3 cut(s) 6, 140, 213
Sau3AI GATC 3 cut(s) 90, 242, 264
Sau96I GGNCC 1 cut(s) 68
SchI GAGTC 1 cut(s) 46
SduI GDGCHC 2 cut(s) 53, 198
SetI ASST 5 cut(s) 61, 130, 180, 316, 384
SfaNI GCATC 2 cut(s) 156, 294
SfiI GGCCNNNNNGGCC 1 cut(s) 71
SinI GGWCC 1 cut(s) 68
SmlI CTYRAG 1 cut(s) 325
SmoI CTYRAG 1 cut(s) 325
Sse9I AATT 1 cut(s) 222
SsiI CCGC 2 cut(s) 140, 192
SspMI CTAG 2 cut(s) 311, 394
TasI AATT 1 cut(s) 222
TauI GCSGC 1 cut(s) 142
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TseFI GTSAC 1 cut(s) 314
TseI GCWGC 2 cut(s) 5, 212
Tsp45I GTSAC 1 cut(s) 314
VpaK11BI GGWCC 1 cut(s) 68
XapI RAATTY 1 cut(s) 222
XceI RCATGY 1 cut(s) 105
XmnI GAANNNNTTC 1 cut(s) 223
XspI CTAG 2 cut(s) 311, 394
Zsp2I ATGCAT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.