Prupe.5G104900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0013555
Physical Location & Seq
Forward (+)
11154998 .. 11156590
1593 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G104900.3

Sequence Viewer

Length: 852 bp
ATGGCTACTGTTCTCAATTTCTCAGGCAAAACACCAAGTCAGAGAATGTGCCTCAAACCAATGACAGGGCCAGCCATTAGTTCCATGGCCATTAAAAGAACATTCCAATTTGAGCAGAACAAGAGAGATGCTCTGCAACATTGCATCTACGTGAAAAGGAAGGCAGAAAATAAACAGTTAAATGACCACAGGCTCTTTCCTGTCATGGCAGCAGCACAGAGAAGCTCAGGCATATATCCAAGTTCTCCTTCCCCATCAGACACAATCAAGAAATTCTACAAATGCATCAATGAGAAAAACTTAAAGCAACTAGGTGATTACATCTCAGAAGGCTGCTACATTGAAGAATGCTCTTTTAACACACCATTACAGGGCAAAAAGGAGGTAATGAATTTTTTTGAACAGCTGATTACAGGCATGGGTCAAAATGTCAAGTTCTGCATACAACACGTGTGCGAAGGAGATGAGCTCATAGGAGCAGCAAACTGGCACATGGAATGGAAAGACAAACAGATCCCCTACACCCGAGGCTGCAGCTTCTTTGAATTCTCCAAAAAAGGGGAAAAAATAGTACTCAAGAAAGCCCAAATTGTCATTGAATCACCAATCAAACCAGGAACTGTAGTGCTGAGTCTGTTAAAGACAATGACTACACTCTTCGATGGTTTCCCAAAAACTACCGAATGGTTCCTAAAGAGTCCTCATATCGTTTTTCAATGGTTATGGAAGATATACACAATACTTTTCGCACCACTTGTAGACAGCTACTTAAGGCTTTGGAACCTTGCAGCTCGATTGCTCAGCTATGCATACTACATTGTGCTTTACATTGCAAAGTTCTTCTTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SnoaL_2

Protein Analysis

284

Amino Acids

32.72

Weight (kDa)

9.4

Isoelectric Point (pI)

44.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013555)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41470
fragaria_vesca FvH4_5g03000
malus_domestica MD06G1089000.v1.1
prunus_persica Prupe.5G104900_v2.0.a1 Prupe.5G104900_v2.0.a1 Prupe.5G104900_v2.0.a1
pyrus_communis pycom06g08500
rosa_chinensis RchiOBHm_Chr7g0196861
rosa_laevigata RLG00000003983
rosa_multiflora Rmu_sc0001083.1_g000018
rosa_roxburghii Rroxscaffold_3G00258900
rosa_rugosa Rorug07G0036200 Rorug07G0036300
rosa_samantha Rh7AG160800 Rh7BG162700 Rh7CG169100 Rh7DG162200
rosa_wichuraiana Rw7G014060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 759
AclWI GGATC 1 cut(s) 508
AcoI YGGCCR 1 cut(s) 87
AcsI RAATTY 3 cut(s) 272, 391, 545
AcvI CACGTG 1 cut(s) 451
AfaI GTAC 1 cut(s) 573
AfiI CCNNNNNNNGG 3 cut(s) 65, 371, 558
AflII CTTAAG 1 cut(s) 769
AflIII ACRYGT 2 cut(s) 448, 450
AgsI TTSAA 6 cut(s) 344, 401, 545, 599, 716, 847
AjnI CCWGG 1 cut(s) 613
AjuI GAANNNNNNNTTGG 2 cut(s) 232, 264
AluBI AGCT 7 cut(s) 225, 406, 469, 537, 765, 791, 804
AluI AGCT 7 cut(s) 225, 406, 469, 537, 765, 791, 804
Alw21I GWGCWC 1 cut(s) 471
AlwI GGATC 1 cut(s) 508
AlwNI CAGNNNCTG 1 cut(s) 620
Ama87I CYCGRG 1 cut(s) 525
AoxI GGCC 2 cut(s) 68, 87
ApeKI GCWGC 7 cut(s) 209, 212, 333, 479, 531, 534, 788
ApoI RAATTY 3 cut(s) 272, 391, 545
AspS9I GGNCC 1 cut(s) 68
AsuHPI GGTGA 2 cut(s) 326, 594
AvaI CYCGRG 1 cut(s) 525
BalI TGGCCA 1 cut(s) 89
BanII GRGCYC 1 cut(s) 471
BbrPI CACGTG 1 cut(s) 451
Bbv12I GWGCWC 1 cut(s) 471
BbvI GCAGC 7 cut(s) 221, 224, 320, 491, 518, 546, 800
BccI CCATC 2 cut(s) 262, 656
BciT130I CCWGG 1 cut(s) 615
BfaI CTAG 1 cut(s) 311
BfmI CTRYAG 2 cut(s) 532, 621
BfrI CTTAAG 1 cut(s) 769
BisI GCNGC 7 cut(s) 210, 213, 334, 480, 532, 535, 789
BlpI GCTNAGC 1 cut(s) 800
BlsI GCNGC 7 cut(s) 211, 214, 335, 481, 533, 536, 790
BmcAI AGTACT 1 cut(s) 573
Bme1390I CCNGG 1 cut(s) 615
BmeT110I CYCGRG 1 cut(s) 525
BmgT120I GGNCC 1 cut(s) 68
BmiI GGNNCC 2 cut(s) 689, 782
BmrFI CCNGG 1 cut(s) 615
BmsI GCATC 3 cut(s) 118, 153, 294
BplI GAGNNNNNCTC 4 cut(s) 115, 147, 453, 485
Bpu10I CCTNAGC 1 cut(s) 226
Bpu1102I GCTNAGC 1 cut(s) 800
BpuEI CTTGAG 1 cut(s) 560
BsaAI YACGTR 2 cut(s) 151, 451
BsaJI CCNNGG 2 cut(s) 84, 526
Bsc4I CCNNNNNNNGG 3 cut(s) 65, 371, 558
Bse1I ACTGG 1 cut(s) 491
Bse3DI GCAATG 2 cut(s) 139, 828
BseBI CCWGG 1 cut(s) 615
BseDI CCNNGG 2 cut(s) 84, 526
BseLI CCNNNNNNNGG 3 cut(s) 65, 371, 558
BseMI GCAATG 2 cut(s) 139, 828
BseMII CTCAG 5 cut(s) 36, 240, 339, 620, 814
BseNI ACTGG 1 cut(s) 491
BseXI GCAGC 7 cut(s) 221, 224, 320, 491, 518, 546, 800
BshFI GGCC 2 cut(s) 70, 89
BsiHKAI GWGCWC 1 cut(s) 471
BsiHKCI CYCGRG 1 cut(s) 525
BslI CCNNNNNNNGG 3 cut(s) 65, 371, 558
BsmI GAATGC 1 cut(s) 353
BsnI GGCC 2 cut(s) 70, 89
BsoBI CYCGRG 1 cut(s) 525
Bsp1286I GDGCHC 1 cut(s) 471
Bsp143I GATC 1 cut(s) 513
Bsp1720I GCTNAGC 1 cut(s) 800
Bsp19I CCATGG 1 cut(s) 84
BspANI GGCC 2 cut(s) 70, 89
BspCNI CTCAG 5 cut(s) 35, 239, 338, 621, 813
BspLI GGNNCC 2 cut(s) 689, 782
BspMAI CTGCAG 1 cut(s) 536
BspPI GGATC 1 cut(s) 508
BspTI CTTAAG 1 cut(s) 769
BsrDI GCAATG 2 cut(s) 139, 828
BsrI ACTGG 1 cut(s) 491
BssECI CCNNGG 2 cut(s) 84, 526
BssMI GATC 1 cut(s) 513
BssT1I CCWWGG 1 cut(s) 84
Bst2UI CCWGG 1 cut(s) 615
Bst4CI ACNGT 3 cut(s) 10, 177, 622
Bst6I CTCTTC 1 cut(s) 662
BstAFI CTTAAG 1 cut(s) 769
BstBAI YACGTR 2 cut(s) 151, 451
BstC8I GCNNGC 1 cut(s) 72
BstDEI CTNAG 5 cut(s) 22, 226, 325, 629, 800
BstDSI CCRYGG 1 cut(s) 84
BstKTI GATC 1 cut(s) 516
BstMBI GATC 1 cut(s) 513
BstNI CCWGG 1 cut(s) 615
BstSCI CCNGG 1 cut(s) 613
BstSFI CTRYAG 2 cut(s) 532, 621
BstV1I GCAGC 7 cut(s) 221, 224, 320, 491, 518, 546, 800
BstX2I RGATCY 1 cut(s) 513
BstYI RGATCY 1 cut(s) 513
BsuRI GGCC 2 cut(s) 70, 89
BtgI CCRYGG 1 cut(s) 84
Cac8I GCNNGC 1 cut(s) 72
CaiI CAGNNNCTG 1 cut(s) 620
Cfr13I GGNCC 1 cut(s) 68
Csp6I GTAC 1 cut(s) 572
CviAII CATG 4 cut(s) 85, 205, 418, 493
CviQI GTAC 1 cut(s) 572
DdeI CTNAG 5 cut(s) 22, 226, 325, 629, 800
DpnI GATC 1 cut(s) 515
DpnII GATC 1 cut(s) 513
EaeI YGGCCR 1 cut(s) 87
Eam1104I CTCTTC 1 cut(s) 662
EarI CTCTTC 1 cut(s) 662
Ecl136II GAGCTC 1 cut(s) 469
Eco130I CCWWGG 1 cut(s) 84
Eco24I GRGCYC 1 cut(s) 471
Eco53kI GAGCTC 1 cut(s) 469
Eco72I CACGTG 1 cut(s) 451
Eco88I CYCGRG 1 cut(s) 525
EcoICRI GAGCTC 1 cut(s) 469
EcoRI GAATTC 1 cut(s) 545
EcoRII CCWGG 1 cut(s) 613
EcoT14I CCWWGG 1 cut(s) 84
EcoT22I ATGCAT 2 cut(s) 287, 811
EcoT38I GRGCYC 1 cut(s) 471
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 4 cut(s) 88, 208, 421, 496
FalI AAGNNNNNCTT 3 cut(s) 232, 264, 827
FatI CATG 4 cut(s) 84, 204, 417, 492
FblI GTMKAC 1 cut(s) 759
Fnu4HI GCNGC 7 cut(s) 210, 213, 334, 480, 532, 535, 789
FriOI GRGCYC 1 cut(s) 471
Fsp4HI GCNGC 7 cut(s) 210, 213, 334, 480, 532, 535, 789
FspBI CTAG 1 cut(s) 311
GluI GCNGC 7 cut(s) 210, 213, 334, 480, 532, 535, 789
HaeIII GGCC 2 cut(s) 70, 89
Hin1II CATG 4 cut(s) 88, 208, 421, 496
HinfI GANTC 3 cut(s) 599, 631, 697
HphI GGTGA 2 cut(s) 326, 594
Hpy166II GTNNAC 1 cut(s) 760
Hpy188I TCNGA 3 cut(s) 42, 259, 328
Hpy188III TCNNGA 2 cut(s) 268, 577
Hpy8I GTNNAC 1 cut(s) 760
HpyAV CCTTC 4 cut(s) 154, 258, 323, 452
HpyCH4III ACNGT 3 cut(s) 10, 177, 622
HpyCH4IV ACGT 2 cut(s) 150, 450
HpyCH4V TGCA 8 cut(s) 136, 144, 285, 441, 534, 788, 809, 833
HpyF3I CTNAG 5 cut(s) 22, 226, 325, 629, 800
HpySE526I ACGT 2 cut(s) 150, 450
Hsp92II CATG 4 cut(s) 88, 208, 421, 496
Kzo9I GATC 1 cut(s) 513
LmnI GCTCC 1 cut(s) 476
Lsp1109I GCAGC 7 cut(s) 221, 224, 320, 491, 518, 546, 800
LweI GCATC 3 cut(s) 118, 153, 294
MaeI CTAG 1 cut(s) 311
MaeII ACGT 2 cut(s) 150, 450
MalI GATC 1 cut(s) 515
MboI GATC 1 cut(s) 513
MboII GAAGA 5 cut(s) 356, 649, 739, 832, 835
MflI RGATCY 1 cut(s) 513
MhlI GDGCHC 1 cut(s) 471
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 6 cut(s) 16, 107, 272, 391, 545, 588
MluNI TGGCCA 1 cut(s) 89
MlyI GAGTC 2 cut(s) 640, 706
MnlI CCTC 4 cut(s) 62, 376, 521, 711
Mox20I TGGCCA 1 cut(s) 89
Mph1103I ATGCAT 2 cut(s) 287, 811
MscI TGGCCA 1 cut(s) 89
MseI TTAA 6 cut(s) 93, 179, 302, 357, 638, 770
MslI CAYNNNNRTG 1 cut(s) 149
Msp20I TGGCCA 1 cut(s) 89
MspA1I CMGCKG 1 cut(s) 406
MspCI CTTAAG 1 cut(s) 769
MspR9I CCNGG 1 cut(s) 615
Mva1269I GAATGC 1 cut(s) 353
MvaI CCWGG 1 cut(s) 615
NcoI CCATGG 1 cut(s) 84
NdeII GATC 1 cut(s) 513
NlaIII CATG 4 cut(s) 88, 208, 421, 496
NlaIV GGNNCC 2 cut(s) 689, 782
NsiI ATGCAT 2 cut(s) 287, 811
PctI GAATGC 1 cut(s) 353
PfeI GAWTC 1 cut(s) 599
PkrI GCNGC 7 cut(s) 211, 214, 335, 481, 533, 536, 790
PleI GAGTC 2 cut(s) 639, 705
PmaCI CACGTG 1 cut(s) 451
PmlI CACGTG 1 cut(s) 451
PpsI GAGTC 2 cut(s) 639, 705
Ppu21I YACGTR 2 cut(s) 151, 451
Psp124BI GAGCTC 1 cut(s) 471
Psp6I CCWGG 1 cut(s) 613
PspCI CACGTG 1 cut(s) 451
PspGI CCWGG 1 cut(s) 613
PspN4I GGNNCC 2 cut(s) 689, 782
PspPI GGNCC 1 cut(s) 68
PstI CTGCAG 1 cut(s) 536
PstNI CAGNNNCTG 1 cut(s) 620
PsuI RGATCY 1 cut(s) 513
PvuII CAGCTG 1 cut(s) 406
RsaI GTAC 1 cut(s) 573
RsaNI GTAC 1 cut(s) 572
RseI CAYNNNNRTG 1 cut(s) 149
SacI GAGCTC 1 cut(s) 471
SaqAI TTAA 6 cut(s) 93, 179, 302, 357, 638, 770
SatI GCNGC 7 cut(s) 210, 213, 334, 480, 532, 535, 789
Sau3AI GATC 1 cut(s) 513
Sau96I GGNCC 1 cut(s) 68
ScaI AGTACT 1 cut(s) 573
SchI GAGTC 2 cut(s) 640, 706
ScrFI CCNGG 1 cut(s) 615
SduI GDGCHC 1 cut(s) 471
SfaNI GCATC 3 cut(s) 118, 153, 294
SfcI CTRYAG 2 cut(s) 532, 621
SmiMI CAYNNNNRTG 1 cut(s) 149
SmlI CTYRAG 2 cut(s) 575, 769
SmoI CTYRAG 2 cut(s) 575, 769
Sse9I AATT 6 cut(s) 16, 107, 272, 391, 545, 588
SspMI CTAG 1 cut(s) 311
SstI GAGCTC 1 cut(s) 471
StyD4I CCNGG 1 cut(s) 613
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 3 cut(s) 10, 177, 622
TaiI ACGT 2 cut(s) 153, 453
TaqI TCGA 2 cut(s) 660, 793
TasI AATT 6 cut(s) 16, 107, 272, 391, 545, 588
TatI WGTACW 1 cut(s) 571
TfiI GAWTC 1 cut(s) 599
Tru1I TTAA 6 cut(s) 93, 179, 302, 357, 638, 770
Tru9I TTAA 6 cut(s) 93, 179, 302, 357, 638, 770
TseI GCWGC 7 cut(s) 209, 212, 333, 479, 531, 534, 788
TspDTI ATGAA 1 cut(s) 404
Vha464I CTTAAG 1 cut(s) 769
XapI RAATTY 3 cut(s) 272, 391, 545
XcmI CCANNNNNNNNNTGG 1 cut(s) 82
XmiI GTMKAC 1 cut(s) 759
XspI CTAG 1 cut(s) 311
ZrmI AGTACT 1 cut(s) 573
Zsp2I ATGCAT 2 cut(s) 287, 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.