MD06G1089000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0013555
Physical Location & Seq
Forward (+)
21706182 .. 21706995
814 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1089000.v1.1.491

Sequence Viewer

Length: 627 bp
ATGGCTACCGTTGTCAATTTCTCCGGCAAAACCACGAGTCGGAGAATTTGCCTCAAACCAATGGCAGGACCAGGACCAGGACCAGCCATTGGTTCCTTGGCTATCAAAAGAGCATGCCAATTGCCCCTCAGCAGAACAAATACTCTGCAACATTGCATCTATATGACAAGGAAGGCACAAGATAGACTATTGAATGAGCACAGGGTGTCTCCTGCATTAGCAGCAACGAGAAACTCAGACATTTTTCCGGGATCTCCTTCTCCTTCTCCTTCTCCATCGGACACAATCAAGCAATTCTACAGATGCATGAATGAGAAAAACTTAAAGCAACTACGTGATCACATCTCAGAAGACTGCTACATTGAAGAGTGCTCTTTCCACACACCATTACACGGCAAAAAGGAGGTTATGAGCTTTTTTGAGCAGCTAACTGCAGGCATGGGCCAAAATGTTGAGTTCATTTTACGACACGTATGCGAAGGAGATGAACTAACAGCAGCAGCAAACTGGCATATGGAATGGAAAAACAAACAGATCCCCTTCACCAGAGGCTGTAGCTTCTTCGAATGCTCCAAAGAAGGAGATAAAATAATAATCAAGTACAGAATTTTAGATTTACTACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SnoaL_2

Protein Analysis

209

Amino Acids

23.49

Weight (kDa)

8.86

Isoelectric Point (pI)

59.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SnoaL_2 PF12680 97 - 197 4.6e-10 SnoaL-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013555)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41470
fragaria_vesca FvH4_5g03000
malus_domestica MD06G1089000.v1.1
prunus_persica Prupe.5G104900_v2.0.a1 Prupe.5G104900_v2.0.a1 Prupe.5G104900_v2.0.a1
pyrus_communis pycom06g08500
rosa_chinensis RchiOBHm_Chr7g0196861
rosa_laevigata RLG00000003983
rosa_multiflora Rmu_sc0001083.1_g000018
rosa_roxburghii Rroxscaffold_3G00258900
rosa_rugosa Rorug07G0036200 Rorug07G0036300
rosa_samantha Rh7AG160800 Rh7BG162700 Rh7CG169100 Rh7DG162200
rosa_wichuraiana Rw7G014060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 89
AclWI GGATC 2 cut(s) 259, 529
AcsI RAATTY 2 cut(s) 45, 606
AdeI CACNNNGTG 1 cut(s) 205
AfaI GTAC 1 cut(s) 602
AfiI CCNNNNNNNGG 5 cut(s) 39, 65, 77, 89, 392
AflIII ACRYGT 1 cut(s) 469
AgsI TTSAA 2 cut(s) 193, 365
AjnI CCWGG 2 cut(s) 70, 76
AluBI AGCT 3 cut(s) 414, 427, 558
AluI AGCT 3 cut(s) 414, 427, 558
Alw21I GWGCWC 2 cut(s) 201, 374
Alw26I GTCTC 1 cut(s) 213
AlwI GGATC 2 cut(s) 259, 529
AlwNI CAGNNNCTG 1 cut(s) 552
AoxI GGCC 1 cut(s) 442
ApeKI GCWGC 4 cut(s) 221, 424, 497, 500
ApoI RAATTY 2 cut(s) 45, 606
AspS9I GGNCC 4 cut(s) 68, 74, 80, 442
AsuC2I CCSGG 1 cut(s) 249
AsuHPI GGTGA 1 cut(s) 535
AsuII TTCGAA 1 cut(s) 564
AvaII GGWCC 3 cut(s) 68, 74, 80
BauI CACGAG 1 cut(s) 34
BbsI GAAGAC 1 cut(s) 357
Bbv12I GWGCWC 2 cut(s) 201, 374
BbvCI CCTCAGC 1 cut(s) 128
BbvI GCAGC 4 cut(s) 233, 436, 509, 512
BccI CCATC 1 cut(s) 283
BceAI ACGGC 1 cut(s) 409
BcgI CGANNNNNNTGC 2 cut(s) 456, 490
BciT130I CCWGG 2 cut(s) 72, 78
BclI TGATCA 1 cut(s) 337
BcnI CCSGG 1 cut(s) 249
BcoDI GTCTC 1 cut(s) 213
BfmI CTRYAG 3 cut(s) 298, 432, 553
BisI GCNGC 4 cut(s) 222, 425, 498, 501
BlsI GCNGC 4 cut(s) 223, 426, 499, 502
Bme1390I CCNGG 3 cut(s) 72, 78, 249
Bme18I GGWCC 3 cut(s) 68, 74, 80
BmgT120I GGNCC 4 cut(s) 68, 74, 80, 442
BmiI GGNNCC 1 cut(s) 94
BmrFI CCNGG 3 cut(s) 72, 78, 249
BmsI GCATC 2 cut(s) 165, 293
BpiI GAAGAC 1 cut(s) 357
Bpu10I CCTNAGC 1 cut(s) 128
Bpu14I TTCGAA 1 cut(s) 564
BpuMI CCSGG 1 cut(s) 249
BsaAI YACGTR 2 cut(s) 335, 472
BsaJI CCNNGG 1 cut(s) 96
Bsc4I CCNNNNNNNGG 5 cut(s) 39, 65, 77, 89, 392
Bse1I ACTGG 1 cut(s) 512
Bse3DI GCAATG 1 cut(s) 151
BseBI CCWGG 2 cut(s) 72, 78
BseDI CCNNGG 1 cut(s) 96
BseLI CCNNNNNNNGG 5 cut(s) 39, 65, 77, 89, 392
BseMI GCAATG 1 cut(s) 151
BseMII CTCAG 3 cut(s) 142, 249, 360
BseNI ACTGG 1 cut(s) 512
BseXI GCAGC 4 cut(s) 233, 436, 509, 512
BshFI GGCC 1 cut(s) 444
BsiHKAI GWGCWC 2 cut(s) 201, 374
BsiSI CCGG 2 cut(s) 24, 248
BslI CCNNNNNNNGG 5 cut(s) 39, 65, 77, 89, 392
BsmAI GTCTC 1 cut(s) 213
BsmI GAATGC 1 cut(s) 572
BsnI GGCC 1 cut(s) 444
Bsp119I TTCGAA 1 cut(s) 564
Bsp1286I GDGCHC 2 cut(s) 201, 374
Bsp143I GATC 3 cut(s) 251, 337, 534
BspANI GGCC 1 cut(s) 444
BspCNI CTCAG 3 cut(s) 141, 248, 359
BspLI GGNNCC 1 cut(s) 94
BspMAI CTGCAG 1 cut(s) 436
BspPI GGATC 2 cut(s) 259, 529
BspT104I TTCGAA 1 cut(s) 564
BsrDI GCAATG 1 cut(s) 151
BsrI ACTGG 1 cut(s) 512
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 3 cut(s) 251, 337, 534
BssSI CACGAG 1 cut(s) 34
BssT1I CCWWGG 1 cut(s) 96
Bst2BI CACGAG 1 cut(s) 34
Bst2UI CCWGG 2 cut(s) 72, 78
Bst4CI ACNGT 1 cut(s) 10
Bst6I CTCTTC 1 cut(s) 360
BstBAI YACGTR 2 cut(s) 335, 472
BstBI TTCGAA 1 cut(s) 564
BstC8I GCNNGC 2 cut(s) 115, 436
BstDEI CTNAG 3 cut(s) 128, 235, 346
BstKTI GATC 3 cut(s) 254, 340, 537
BstMAI GTCTC 1 cut(s) 213
BstMBI GATC 3 cut(s) 251, 337, 534
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstNI CCWGG 2 cut(s) 72, 78
BstNSI RCATGY 1 cut(s) 117
BstSCI CCNGG 3 cut(s) 70, 76, 247
BstSFI CTRYAG 3 cut(s) 298, 432, 553
BstV1I GCAGC 4 cut(s) 233, 436, 509, 512
BstV2I GAAGAC 1 cut(s) 357
BstX2I RGATCY 2 cut(s) 251, 534
BstYI RGATCY 2 cut(s) 251, 534
BsuRI GGCC 1 cut(s) 444
Cac8I GCNNGC 2 cut(s) 115, 436
CaiI CAGNNNCTG 1 cut(s) 552
Cfr13I GGNCC 4 cut(s) 68, 74, 80, 442
Csp6I GTAC 1 cut(s) 601
CviAII CATG 3 cut(s) 114, 307, 439
CviJI RGCY 8 cut(s) 5, 86, 101, 414, 427, 444, 552, 558
CviKI_1 RGCY 8 cut(s) 5, 86, 101, 414, 427, 444, 552, 558
CviQI GTAC 1 cut(s) 601
DdeI CTNAG 3 cut(s) 128, 235, 346
DpnI GATC 3 cut(s) 253, 339, 536
DpnII GATC 3 cut(s) 251, 337, 534
DraIII CACNNNGTG 1 cut(s) 205
Eam1104I CTCTTC 1 cut(s) 360
EarI CTCTTC 1 cut(s) 360
Eco130I CCWWGG 1 cut(s) 96
Eco47I GGWCC 3 cut(s) 68, 74, 80
EcoRII CCWGG 2 cut(s) 70, 76
EcoT14I CCWWGG 1 cut(s) 96
EcoT22I ATGCAT 1 cut(s) 308
ErhI CCWWGG 1 cut(s) 96
FaeI CATG 3 cut(s) 117, 310, 442
FaiI YATR 9 cut(s) 115, 162, 164, 308, 410, 440, 475, 513, 515
FatI CATG 3 cut(s) 113, 306, 438
FauNDI CATATG 1 cut(s) 513
FbaI TGATCA 1 cut(s) 337
Fnu4HI GCNGC 4 cut(s) 222, 425, 498, 501
Fsp4HI GCNGC 4 cut(s) 222, 425, 498, 501
GluI GCNGC 4 cut(s) 222, 425, 498, 501
HaeIII GGCC 1 cut(s) 444
HapII CCGG 2 cut(s) 24, 248
Hin1II CATG 3 cut(s) 117, 310, 442
HinfI GANTC 1 cut(s) 37
HpaII CCGG 2 cut(s) 24, 248
HphI GGTGA 1 cut(s) 535
Hpy188I TCNGA 4 cut(s) 42, 238, 280, 349
HpyAV CCTTC 7 cut(s) 166, 267, 273, 279, 473, 550, 572
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4IV ACGT 2 cut(s) 334, 471
HpyCH4V TGCA 5 cut(s) 148, 156, 215, 306, 434
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
HpyF3I CTNAG 3 cut(s) 128, 235, 346
HpySE526I ACGT 2 cut(s) 334, 471
Hsp92II CATG 3 cut(s) 117, 310, 442
Ksp22I TGATCA 1 cut(s) 337
Kzo9I GATC 3 cut(s) 251, 337, 534
LmnI GCTCC 1 cut(s) 575
Lsp1109I GCAGC 4 cut(s) 233, 436, 509, 512
LweI GCATC 2 cut(s) 165, 293
MaeII ACGT 2 cut(s) 334, 471
MalI GATC 3 cut(s) 253, 339, 536
MboI GATC 3 cut(s) 251, 337, 534
MboII GAAGA 3 cut(s) 362, 377, 553
MfeI CAATTG 1 cut(s) 119
MflI RGATCY 2 cut(s) 251, 534
MhlI GDGCHC 2 cut(s) 201, 374
MluCI AATT 5 cut(s) 16, 45, 119, 293, 606
MlyI GAGTC 1 cut(s) 46
MmeI TCCRAC 1 cut(s) 20
MnlI CCTC 4 cut(s) 62, 137, 397, 542
Mph1103I ATGCAT 1 cut(s) 308
MseI TTAA 1 cut(s) 323
MslI CAYNNNNRTG 1 cut(s) 161
MspI CCGG 2 cut(s) 24, 248
MspR9I CCNGG 3 cut(s) 72, 78, 249
MunI CAATTG 1 cut(s) 119
Mva1269I GAATGC 1 cut(s) 572
MvaI CCWGG 2 cut(s) 72, 78
MwoI GCNNNNNNNGC 1 cut(s) 221
NciI CCSGG 1 cut(s) 249
NdeI CATATG 1 cut(s) 513
NdeII GATC 3 cut(s) 251, 337, 534
NlaIII CATG 3 cut(s) 117, 310, 442
NlaIV GGNNCC 1 cut(s) 94
NsiI ATGCAT 1 cut(s) 308
NspI RCATGY 1 cut(s) 117
NspV TTCGAA 1 cut(s) 564
PaeI GCATGC 1 cut(s) 117
PctI GAATGC 1 cut(s) 572
PflMI CCANNNNNTGG 1 cut(s) 89
PfoI TCCNGGA 1 cut(s) 247
PkrI GCNGC 4 cut(s) 223, 426, 499, 502
PleI GAGTC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 45
Ppu21I YACGTR 2 cut(s) 335, 472
Psp6I CCWGG 2 cut(s) 70, 76
PspGI CCWGG 2 cut(s) 70, 76
PspN4I GGNNCC 1 cut(s) 94
PspPI GGNCC 4 cut(s) 68, 74, 80, 442
PstI CTGCAG 1 cut(s) 436
PstNI CAGNNNCTG 1 cut(s) 552
PsuI RGATCY 2 cut(s) 251, 534
RsaI GTAC 1 cut(s) 602
RsaNI GTAC 1 cut(s) 601
RseI CAYNNNNRTG 1 cut(s) 161
SaqAI TTAA 1 cut(s) 323
SatI GCNGC 4 cut(s) 222, 425, 498, 501
Sau3AI GATC 3 cut(s) 251, 337, 534
Sau96I GGNCC 4 cut(s) 68, 74, 80, 442
SchI GAGTC 1 cut(s) 46
ScrFI CCNGG 3 cut(s) 72, 78, 249
SduI GDGCHC 2 cut(s) 201, 374
SetI ASST 6 cut(s) 337, 408, 416, 429, 474, 560
SfaNI GCATC 2 cut(s) 165, 293
SfcI CTRYAG 3 cut(s) 298, 432, 553
SfuI TTCGAA 1 cut(s) 564
SinI GGWCC 3 cut(s) 68, 74, 80
SmiMI CAYNNNNRTG 1 cut(s) 161
SphI GCATGC 1 cut(s) 117
Sse9I AATT 5 cut(s) 16, 45, 119, 293, 606
StyD4I CCNGG 3 cut(s) 70, 76, 247
StyI CCWWGG 1 cut(s) 96
TaaI ACNGT 1 cut(s) 10
TaiI ACGT 2 cut(s) 337, 474
TaqI TCGA 1 cut(s) 564
TasI AATT 5 cut(s) 16, 45, 119, 293, 606
TatI WGTACW 1 cut(s) 600
Tru1I TTAA 1 cut(s) 323
Tru9I TTAA 1 cut(s) 323
TseI GCWGC 4 cut(s) 221, 424, 497, 500
TspDTI ATGAA 3 cut(s) 323, 448, 501
Van91I CCANNNNNTGG 1 cut(s) 89
VpaK11BI GGWCC 3 cut(s) 68, 74, 80
XapI RAATTY 2 cut(s) 45, 606
XceI RCATGY 1 cut(s) 117
XcmI CCANNNNNNNNNTGG 1 cut(s) 94
Zsp2I ATGCAT 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.