Rw7G014060

PPR repeat family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0013555
Physical Location & Seq
Reverse (-)
13525110 .. 13526528
1419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G014060.1

Sequence Viewer

Length: 993 bp
ATGGCCCATTATTCTTTCCTCTATTCCTTCACATTCGTGCCTAGCTTGTATGAAGTCTTCATTCTACATGAGTGTTTGCTTCAATACCAAAACCAGCACCGTCTCAATCTCCCTTTGTTTCAAACTTGTCGCAAGGCAATGGCTGCCGTTGTCAATCTCTCCAGCATTGCACCGAGTCAGAGAATGTGCTCCAAACCTATGGCCGGACCGGCCATTGGTTCCTTAACGATCAAAAGGACATGCAAGTTTGTTCGGCAGAACAGAGCTGACGCAAAGCCGCATGGCATCTATGTCAAAAGGAAGGCAGAAAAAAACCTCTCCAACATCAGCGGGCTCTTTCCTATCATGGCTGCAAGAAGAATTTCAACTTTTTCTTCGGGATCGCTCTCCCCATCCGACATGGTCAATGACTTCTACAAATGCATCAATGAGAAAAACTTGAAGCAACTAGGTCACTACATCTCAAGTGAGTGTTGCATAGAGGAATGCTCCTTTAGCACACCATTGCAAGGCAAAAAGGTAATAATGAACTTCTTTGAAGAGCTAACTGCAGCCATGGGCAATAATATAAAGTTCAGCATACAACATGTGTGCGAAGGAGGTGATCAGCTTACAGCAGCAGCAAACTGGCACATGGAATGGAAAAACAAACAGATCCCATTCACCAGAGGCTGCAGCTTCTTTGAATACTCAAAAGAAGGAGAAAAACTAATTATCAAGAAAGCACAGATTGTTATTGAATCACCAATCAAACCAGGACACCTAGTACTGAGTCTTTTGAAGGCAGTGACCTCTCTATTTGATGGTTTCCCAAGAGCTACTGAATGGTTCCTAAAAAGTCCTCATATTGTTTTCCAATGCATATGGAGGATATACAAAATGATGTTTGCACCAATTATAGAAGGCTACATAGGGCTTTGGAACGTCGCAATTCGATTGCTCAGCTATGTATACAACATTTTGCTTTACATTTCAAACATGTTTTTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

330

Amino Acids

37.74

Weight (kDa)

9.37

Isoelectric Point (pI)

49.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SnoaL_2 PF12680 135 - 233 4.2e-07 SnoaL-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013555)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41470
fragaria_vesca FvH4_5g03000
malus_domestica MD06G1089000.v1.1
prunus_persica Prupe.5G104900_v2.0.a1 Prupe.5G104900_v2.0.a1 Prupe.5G104900_v2.0.a1
pyrus_communis pycom06g08500
rosa_chinensis RchiOBHm_Chr7g0196861
rosa_laevigata RLG00000003983
rosa_multiflora Rmu_sc0001083.1_g000018
rosa_roxburghii Rroxscaffold_3G00258900
rosa_rugosa Rorug07G0036200 Rorug07G0036300
rosa_samantha Rh7AG160800 Rh7BG162700 Rh7CG169100 Rh7DG162200
rosa_wichuraiana Rw7G014060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 951
AciI CCGC 2 cut(s) 278, 330
AclWI GGATC 2 cut(s) 388, 649
AcoI YGGCCR 2 cut(s) 201, 210
AcsI RAATTY 1 cut(s) 360
AfaI GTAC 1 cut(s) 768
AfiI CCNNNNNNNGG 3 cut(s) 203, 215, 509
AflIII ACRYGT 2 cut(s) 586, 978
AjnI CCWGG 1 cut(s) 754
AleI CACNNNNGTG 1 cut(s) 35
AluBI AGCT 7 cut(s) 45, 266, 544, 610, 678, 818, 945
AluI AGCT 7 cut(s) 45, 266, 544, 610, 678, 818, 945
Alw21I GWGCWC 1 cut(s) 191
Alw26I GTCTC 1 cut(s) 107
AlwI GGATC 2 cut(s) 388, 649
AlwNI CAGNNNCTG 1 cut(s) 672
AoxI GGCC 3 cut(s) 3, 201, 210
ApeKI GCWGC 7 cut(s) 143, 350, 551, 617, 620, 672, 675
ApoI RAATTY 1 cut(s) 360
Asp700I GAANNNNTTC 1 cut(s) 361
AspS9I GGNCC 2 cut(s) 4, 206
AsuHPI GGTGA 3 cut(s) 614, 655, 735
AvaII GGWCC 1 cut(s) 206
BanII GRGCYC 1 cut(s) 336
BarI GAAGNNNNNNTAC 2 cut(s) 41, 73
BbsI GAAGAC 1 cut(s) 49
Bbv12I GWGCWC 1 cut(s) 191
BbvI GCAGC 7 cut(s) 130, 337, 563, 629, 632, 659, 687
BccI CCATC 2 cut(s) 400, 797
BceAI ACGGC 1 cut(s) 131
BciT130I CCWGG 1 cut(s) 756
BclI TGATCA 1 cut(s) 604
BcoDI GTCTC 1 cut(s) 107
BfaI CTAG 3 cut(s) 42, 449, 764
BfmI CTRYAG 2 cut(s) 549, 673
BglI GCCNNNNNGGC 1 cut(s) 209
BisI GCNGC 8 cut(s) 144, 278, 351, 552, 618, 621, 673, 676
BlpI GCTNAGC 1 cut(s) 941
BlsI GCNGC 8 cut(s) 145, 279, 352, 553, 619, 622, 674, 677
BmcAI AGTACT 1 cut(s) 768
Bme1390I CCNGG 1 cut(s) 756
Bme18I GGWCC 1 cut(s) 206
BmgT120I GGNCC 2 cut(s) 4, 206
BmiI GGNNCC 2 cut(s) 220, 830
BmrFI CCNGG 1 cut(s) 756
BmsI GCATC 2 cut(s) 294, 432
BpiI GAAGAC 1 cut(s) 49
BplI GAGNNNNNCTC 2 cut(s) 473, 505
BpmI CTGGAG 1 cut(s) 145
Bpu1102I GCTNAGC 1 cut(s) 941
BpuEI CTTGAG 1 cut(s) 448
BsaJI CCNNGG 1 cut(s) 555
Bsc4I CCNNNNNNNGG 3 cut(s) 203, 215, 509
Bse118I RCCGGY 1 cut(s) 208
Bse1I ACTGG 1 cut(s) 632
Bse3DI GCAATG 3 cut(s) 144, 165, 503
BseBI CCWGG 1 cut(s) 756
BseDI CCNNGG 1 cut(s) 555
BseGI GGATG 1 cut(s) 392
BseLI CCNNNNNNNGG 3 cut(s) 203, 215, 509
BseMI GCAATG 3 cut(s) 144, 165, 503
BseMII CTCAG 2 cut(s) 761, 955
BseNI ACTGG 1 cut(s) 632
BseXI GCAGC 7 cut(s) 130, 337, 563, 629, 632, 659, 687
BshFI GGCC 3 cut(s) 5, 203, 212
BsiHKAI GWGCWC 1 cut(s) 191
BsiSI CCGG 2 cut(s) 204, 209
BslI CCNNNNNNNGG 3 cut(s) 203, 215, 509
BsmAI GTCTC 1 cut(s) 107
BsmBI CGTCTC 1 cut(s) 107
BsmI GAATGC 1 cut(s) 491
BsnI GGCC 3 cut(s) 5, 203, 212
Bsp1286I GDGCHC 2 cut(s) 191, 336
Bsp143I GATC 4 cut(s) 228, 380, 604, 654
Bsp1720I GCTNAGC 1 cut(s) 941
Bsp19I CCATGG 1 cut(s) 555
BspACI CCGC 2 cut(s) 278, 330
BspANI GGCC 3 cut(s) 5, 203, 212
BspCNI CTCAG 2 cut(s) 762, 954
BspLI GGNNCC 2 cut(s) 220, 830
BspMAI CTGCAG 2 cut(s) 553, 677
BspPI GGATC 2 cut(s) 388, 649
BspQI GCTCTTC 1 cut(s) 534
BsrDI GCAATG 3 cut(s) 144, 165, 503
BsrFI RCCGGY 1 cut(s) 208
BsrI ACTGG 1 cut(s) 632
BssAI RCCGGY 1 cut(s) 208
BssECI CCNNGG 1 cut(s) 555
BssMI GATC 4 cut(s) 228, 380, 604, 654
BssNAI GTATAC 1 cut(s) 952
BssT1I CCWWGG 1 cut(s) 555
Bst1107I GTATAC 1 cut(s) 952
Bst2UI CCWGG 1 cut(s) 756
Bst4CI ACNGT 1 cut(s) 101
Bst6I CTCTTC 1 cut(s) 534
BstAPI GCANNNNNTGC 1 cut(s) 143
BstC8I GCNNGC 1 cut(s) 332
BstDEI CTNAG 2 cut(s) 770, 941
BstDSI CCRYGG 1 cut(s) 555
BstF5I GGATG 1 cut(s) 392
BstKTI GATC 4 cut(s) 231, 383, 607, 657
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 4 cut(s) 228, 380, 604, 654
BstMWI GCNNNNNNNGC 3 cut(s) 143, 209, 495
BstNI CCWGG 1 cut(s) 756
BstNSI RCATGY 3 cut(s) 243, 590, 982
BstSCI CCNGG 1 cut(s) 754
BstSFI CTRYAG 2 cut(s) 549, 673
BstV1I GCAGC 7 cut(s) 130, 337, 563, 629, 632, 659, 687
BstV2I GAAGAC 1 cut(s) 49
BstX2I RGATCY 1 cut(s) 654
BstXI CCANNNNNNTGG 1 cut(s) 199
BstYI RGATCY 1 cut(s) 654
BstZ17I GTATAC 1 cut(s) 952
BsuRI GGCC 3 cut(s) 5, 203, 212
BtgI CCRYGG 1 cut(s) 555
BtsCI GGATG 1 cut(s) 392
BtsI GCAGTG 1 cut(s) 792
BtsIMutI CAGTG 1 cut(s) 792
Cac8I GCNNGC 1 cut(s) 332
CaiI CAGNNNCTG 1 cut(s) 672
Cfr10I RCCGGY 1 cut(s) 208
Cfr13I GGNCC 2 cut(s) 4, 206
CpoI CGGWCCG 1 cut(s) 206
CseI GACGC 1 cut(s) 278
Csp6I GTAC 1 cut(s) 767
CspI CGGWCCG 1 cut(s) 206
CviAII CATG 9 cut(s) 68, 240, 281, 346, 400, 556, 587, 634, 979
CviQI GTAC 1 cut(s) 767
DdeI CTNAG 2 cut(s) 770, 941
DpnI GATC 4 cut(s) 230, 382, 606, 656
DpnII GATC 4 cut(s) 228, 380, 604, 654
EaeI YGGCCR 2 cut(s) 201, 210
Eam1104I CTCTTC 1 cut(s) 534
EarI CTCTTC 1 cut(s) 534
Eco130I CCWWGG 1 cut(s) 555
Eco24I GRGCYC 1 cut(s) 336
Eco47I GGWCC 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 754
EcoT14I CCWWGG 1 cut(s) 555
EcoT22I ATGCAT 2 cut(s) 425, 863
EcoT38I GRGCYC 1 cut(s) 336
ErhI CCWWGG 1 cut(s) 555
Esp3I CGTCTC 1 cut(s) 107
FaeI CATG 9 cut(s) 71, 243, 284, 349, 403, 559, 590, 637, 982
FatI CATG 9 cut(s) 67, 239, 280, 345, 399, 555, 586, 633, 978
FauI CCCGC 1 cut(s) 323
FauNDI CATATG 1 cut(s) 863
FbaI TGATCA 1 cut(s) 604
FblI GTMKAC 1 cut(s) 951
Fnu4HI GCNGC 8 cut(s) 144, 278, 351, 552, 618, 621, 673, 676
FokI GGATG 1 cut(s) 379
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 8 cut(s) 144, 278, 351, 552, 618, 621, 673, 676
FspBI CTAG 3 cut(s) 42, 449, 764
GluI GCNGC 8 cut(s) 144, 278, 351, 552, 618, 621, 673, 676
GsuI CTGGAG 1 cut(s) 145
HaeIII GGCC 3 cut(s) 5, 203, 212
HapII CCGG 2 cut(s) 204, 209
HgaI GACGC 1 cut(s) 278
Hin1II CATG 9 cut(s) 71, 243, 284, 349, 403, 559, 590, 637, 982
HinfI GANTC 3 cut(s) 175, 740, 772
HpaII CCGG 2 cut(s) 204, 209
HphI GGTGA 3 cut(s) 614, 655, 735
Hpy166II GTNNAC 1 cut(s) 952
Hpy188I TCNGA 2 cut(s) 180, 397
Hpy188III TCNNGA 2 cut(s) 378, 718
Hpy8I GTNNAC 1 cut(s) 952
Hpy99I CGWCG 1 cut(s) 929
HpyAV CCTTC 6 cut(s) 37, 295, 590, 692, 775, 896
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4IV ACGT 1 cut(s) 924
HpyF10VI GCNNNNNNNGC 3 cut(s) 143, 209, 495
HpyF3I CTNAG 2 cut(s) 770, 941
HpySE526I ACGT 1 cut(s) 924
Hsp92II CATG 9 cut(s) 71, 243, 284, 349, 403, 559, 590, 637, 982
Ksp22I TGATCA 1 cut(s) 604
Kzo9I GATC 4 cut(s) 228, 380, 604, 654
LguI GCTCTTC 1 cut(s) 534
LmnI GCTCC 2 cut(s) 194, 494
LpnPI CCDG 8 cut(s) 107, 175, 217, 222, 613, 679, 741, 768
Lsp1109I GCAGC 7 cut(s) 130, 337, 563, 629, 632, 659, 687
LweI GCATC 2 cut(s) 294, 432
MaeI CTAG 3 cut(s) 42, 449, 764
MaeII ACGT 1 cut(s) 924
MaeIII GTNAC 2 cut(s) 452, 787
MalI GATC 4 cut(s) 230, 382, 606, 656
MboI GATC 4 cut(s) 228, 380, 604, 654
MboII GAAGA 4 cut(s) 49, 366, 369, 551
MflI RGATCY 1 cut(s) 654
MhlI GDGCHC 2 cut(s) 191, 336
MluCI AATT 4 cut(s) 360, 711, 894, 930
MlyI GAGTC 2 cut(s) 184, 781
MmeI TCCRAC 2 cut(s) 345, 420
MnlI CCTC 8 cut(s) 29, 326, 475, 593, 662, 802, 852, 861
Mph1103I ATGCAT 2 cut(s) 425, 863
MroXI GAANNNNTTC 1 cut(s) 361
MseI TTAA 1 cut(s) 224
MslI CAYNNNNRTG 1 cut(s) 35
MspA1I CMGCKG 1 cut(s) 330
MspI CCGG 2 cut(s) 204, 209
MspR9I CCNGG 1 cut(s) 756
Mva1269I GAATGC 1 cut(s) 491
MvaI CCWGG 1 cut(s) 756
MwoI GCNNNNNNNGC 3 cut(s) 143, 209, 495
NcoI CCATGG 1 cut(s) 555
NdeI CATATG 1 cut(s) 863
NdeII GATC 4 cut(s) 228, 380, 604, 654
NlaIII CATG 9 cut(s) 71, 243, 284, 349, 403, 559, 590, 637, 982
NlaIV GGNNCC 2 cut(s) 220, 830
NmuCI GTSAC 2 cut(s) 452, 787
NsiI ATGCAT 2 cut(s) 425, 863
NspI RCATGY 3 cut(s) 243, 590, 982
OliI CACNNNNGTG 1 cut(s) 35
PciI ACATGT 2 cut(s) 586, 978
PciSI GCTCTTC 1 cut(s) 534
PctI GAATGC 1 cut(s) 491
PdmI GAANNNNTTC 1 cut(s) 361
PfeI GAWTC 1 cut(s) 740
PflFI GACNNNGTC 1 cut(s) 401
PkrI GCNGC 8 cut(s) 145, 279, 352, 553, 619, 622, 674, 677
PleI GAGTC 2 cut(s) 183, 780
PpsI GAGTC 2 cut(s) 183, 780
PscI ACATGT 2 cut(s) 586, 978
Psp6I CCWGG 1 cut(s) 754
PspGI CCWGG 1 cut(s) 754
PspN4I GGNNCC 2 cut(s) 220, 830
PspPI GGNCC 2 cut(s) 4, 206
PstI CTGCAG 2 cut(s) 553, 677
PstNI CAGNNNCTG 1 cut(s) 672
PsuI RGATCY 1 cut(s) 654
PsyI GACNNNGTC 1 cut(s) 401
RsaI GTAC 1 cut(s) 768
RsaNI GTAC 1 cut(s) 767
RseI CAYNNNNRTG 1 cut(s) 35
Rsr2I CGGWCCG 1 cut(s) 206
RsrII CGGWCCG 1 cut(s) 206
SapI GCTCTTC 1 cut(s) 534
SaqAI TTAA 1 cut(s) 224
SatI GCNGC 8 cut(s) 144, 278, 351, 552, 618, 621, 673, 676
Sau3AI GATC 4 cut(s) 228, 380, 604, 654
Sau96I GGNCC 2 cut(s) 4, 206
ScaI AGTACT 1 cut(s) 768
SchI GAGTC 2 cut(s) 184, 781
ScrFI CCNGG 1 cut(s) 756
SduI GDGCHC 2 cut(s) 191, 336
SfaNI GCATC 2 cut(s) 294, 432
SfcI CTRYAG 2 cut(s) 549, 673
SfiI GGCCNNNNNGGCC 1 cut(s) 209
SinI GGWCC 1 cut(s) 206
SmiMI CAYNNNNRTG 1 cut(s) 35
SmlI CTYRAG 1 cut(s) 463
SmoI CTYRAG 1 cut(s) 463
Sse9I AATT 4 cut(s) 360, 711, 894, 930
SsiI CCGC 2 cut(s) 278, 330
SspMI CTAG 3 cut(s) 42, 449, 764
StyD4I CCNGG 1 cut(s) 754
StyI CCWWGG 1 cut(s) 555
TaaI ACNGT 1 cut(s) 101
TaiI ACGT 1 cut(s) 927
TaqI TCGA 1 cut(s) 934
TasI AATT 4 cut(s) 360, 711, 894, 930
TatI WGTACW 1 cut(s) 766
TauI GCSGC 1 cut(s) 280
TfiI GAWTC 1 cut(s) 740
Tru1I TTAA 1 cut(s) 224
Tru9I TTAA 1 cut(s) 224
TscAI CASTG 1 cut(s) 792
TseFI GTSAC 2 cut(s) 452, 787
TseI GCWGC 7 cut(s) 143, 350, 551, 617, 620, 672, 675
Tsp45I GTSAC 2 cut(s) 452, 787
TspDTI ATGAA 3 cut(s) 49, 66, 542
TspRI CASTG 1 cut(s) 792
Tth111I GACNNNGTC 1 cut(s) 401
VpaK11BI GGWCC 1 cut(s) 206
XapI RAATTY 1 cut(s) 360
XceI RCATGY 3 cut(s) 243, 590, 982
XmiI GTMKAC 1 cut(s) 951
XmnI GAANNNNTTC 1 cut(s) 361
XspI CTAG 3 cut(s) 42, 449, 764
ZrmI AGTACT 1 cut(s) 768
Zsp2I ATGCAT 2 cut(s) 425, 863
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.