RLG00000003983

PPR repeat family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0013555
Physical Location & Seq
Forward (+)
54994456 .. 54995727
1272 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003983

Sequence Viewer

Length: 855 bp
ATGGCTGCCGTTGTCAATCTCTCCAGCATTGCACCGAGTCAGAGAATGTGCTTCAAACCTATGGCCAGACCGGCCATTGGTTCCTTAACGATCAAAAGGACATGCAAGTTTGTTCGGCAGAACAGAGCTGACGCAAAGCCGCATAGCATCTATGTCAAAAGGAAGGCAGAAAAAAACCTCTCCAACATCAGCGGGCTCTTTCCTATCATGGCTGCAAGAAAAATTTCAACTTTTTCTTCGGGATCGCTCTCCCCATCCGACACGATCAATGACTTCTACAAATGCATCAATGAGAAAAACTTGAAGCAACTAGGTCACTACATCTCAAGTGAGTGTTGCATAGAGGAATGCTCCTTTAGCACACCATTACAAGGCAAAAAGGTAATAATGATCTTCTTTGAAGAGCTGACTGCAGCCATGGGCAATAATATAAAGTTCAGCATACAACATGTGTGCGAAGGAGTTGATCAGCTTACAGCAGCAGCAAACTGGCACATGGAATGGAAAGACAAACAGATCCCATTCACCCGAGGCTGCAGCTTCTTTGAATACTCAAAAGAAGGAGAAAAACTAATTATCAAGAAAGCACAGATTGTTATTGAATCACCGATCAAACCAGGACACCTAGTACTGAGTCTTTTGAAGGCAGTGACCTCTCTATTTGATGGTTTCCCAAGAGCTACTGAATGGTTCCTAAAAAGTCCTCATATTGTTTTCAATTGCATATGGAGGATATACAAAATGATGTTTGCACCAATTATAGAAGGCTACCTAGGGCTTTGGAACATCGCAATTCGATTGCTCAGCTATGTATACAACATTCTGCTTTACATTTCAAACATGTTTTTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

285

Amino Acids

32.34

Weight (kDa)

9.44

Isoelectric Point (pI)

46.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013555)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41470
fragaria_vesca FvH4_5g03000
malus_domestica MD06G1089000.v1.1
prunus_persica Prupe.5G104900_v2.0.a1 Prupe.5G104900_v2.0.a1 Prupe.5G104900_v2.0.a1
pyrus_communis pycom06g08500
rosa_chinensis RchiOBHm_Chr7g0196861
rosa_laevigata RLG00000003983
rosa_multiflora Rmu_sc0001083.1_g000018
rosa_roxburghii Rroxscaffold_3G00258900
rosa_rugosa Rorug07G0036200 Rorug07G0036300
rosa_samantha Rh7AG160800 Rh7BG162700 Rh7CG169100 Rh7DG162200
rosa_wichuraiana Rw7G014060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 813
AciI CCGC 2 cut(s) 140, 192
AclWI GGATC 2 cut(s) 250, 511
AcoI YGGCCR 2 cut(s) 63, 72
AcsI RAATTY 1 cut(s) 222
AfaI GTAC 1 cut(s) 630
AfiI CCNNNNNNNGG 2 cut(s) 77, 371
AflIII ACRYGT 2 cut(s) 448, 840
AjnI CCWGG 1 cut(s) 616
AluBI AGCT 6 cut(s) 128, 406, 472, 540, 680, 807
AluI AGCT 6 cut(s) 128, 406, 472, 540, 680, 807
AlwI GGATC 2 cut(s) 250, 511
Ama87I CYCGRG 1 cut(s) 528
AoxI GGCC 2 cut(s) 63, 72
ApeKI GCWGC 7 cut(s) 5, 212, 413, 479, 482, 534, 537
ApoI RAATTY 1 cut(s) 222
Asp700I GAANNNNTTC 1 cut(s) 223
AspA2I CCTAGG 1 cut(s) 772
AsuHPI GGTGA 2 cut(s) 517, 597
AvaI CYCGRG 1 cut(s) 528
AvrII CCTAGG 1 cut(s) 772
BalI TGGCCA 1 cut(s) 65
BanII GRGCYC 1 cut(s) 198
BbvI GCAGC 6 cut(s) 199, 425, 491, 494, 521, 549
BccI CCATC 2 cut(s) 262, 659
BciT130I CCWGG 1 cut(s) 618
BclI TGATCA 1 cut(s) 466
BfaI CTAG 3 cut(s) 311, 626, 773
BfmI CTRYAG 2 cut(s) 411, 535
BglI GCCNNNNNGGC 1 cut(s) 71
BisI GCNGC 8 cut(s) 6, 140, 213, 414, 480, 483, 535, 538
BlnI CCTAGG 1 cut(s) 772
BlpI GCTNAGC 1 cut(s) 803
BlsI GCNGC 8 cut(s) 7, 141, 214, 415, 481, 484, 536, 539
BmcAI AGTACT 1 cut(s) 630
Bme1390I CCNGG 1 cut(s) 618
BmeT110I CYCGRG 1 cut(s) 528
BmiI GGNNCC 2 cut(s) 82, 692
BmrFI CCNGG 1 cut(s) 618
BmsI GCATC 2 cut(s) 156, 294
BplI GAGNNNNNCTC 2 cut(s) 335, 367
BpmI CTGGAG 1 cut(s) 7
Bpu1102I GCTNAGC 1 cut(s) 803
BpuEI CTTGAG 1 cut(s) 310
BsaJI CCNNGG 3 cut(s) 417, 529, 772
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 371
Bse118I RCCGGY 1 cut(s) 70
Bse1I ACTGG 1 cut(s) 494
Bse3DI GCAATG 1 cut(s) 27
BseBI CCWGG 1 cut(s) 618
BseDI CCNNGG 3 cut(s) 417, 529, 772
BseGI GGATG 1 cut(s) 254
BseLI CCNNNNNNNGG 2 cut(s) 77, 371
BseMI GCAATG 1 cut(s) 27
BseMII CTCAG 2 cut(s) 623, 817
BseNI ACTGG 1 cut(s) 494
BseXI GCAGC 6 cut(s) 199, 425, 491, 494, 521, 549
BshFI GGCC 2 cut(s) 65, 74
BsiHKCI CYCGRG 1 cut(s) 528
BsiSI CCGG 1 cut(s) 71
BslI CCNNNNNNNGG 2 cut(s) 77, 371
BsmI GAATGC 1 cut(s) 353
BsnI GGCC 2 cut(s) 65, 74
BsoBI CYCGRG 1 cut(s) 528
Bsp1286I GDGCHC 1 cut(s) 198
Bsp143I GATC 7 cut(s) 90, 242, 264, 390, 466, 516, 609
Bsp1720I GCTNAGC 1 cut(s) 803
Bsp19I CCATGG 1 cut(s) 417
BspACI CCGC 2 cut(s) 140, 192
BspANI GGCC 2 cut(s) 65, 74
BspCNI CTCAG 2 cut(s) 624, 816
BspLI GGNNCC 2 cut(s) 82, 692
BspMAI CTGCAG 2 cut(s) 415, 539
BspPI GGATC 2 cut(s) 250, 511
BspQI GCTCTTC 1 cut(s) 396
BsrDI GCAATG 1 cut(s) 27
BsrFI RCCGGY 1 cut(s) 70
BsrI ACTGG 1 cut(s) 494
BssAI RCCGGY 1 cut(s) 70
BssECI CCNNGG 3 cut(s) 417, 529, 772
BssMI GATC 7 cut(s) 90, 242, 264, 390, 466, 516, 609
BssNAI GTATAC 1 cut(s) 814
BssT1I CCWWGG 2 cut(s) 417, 772
Bst1107I GTATAC 1 cut(s) 814
Bst2UI CCWGG 1 cut(s) 618
Bst6I CTCTTC 1 cut(s) 396
BstC8I GCNNGC 1 cut(s) 194
BstDEI CTNAG 2 cut(s) 632, 803
BstDSI CCRYGG 1 cut(s) 417
BstF5I GGATG 1 cut(s) 254
BstKTI GATC 7 cut(s) 93, 245, 267, 393, 469, 519, 612
BstMBI GATC 7 cut(s) 90, 242, 264, 390, 466, 516, 609
BstMWI GCNNNNNNNGC 2 cut(s) 71, 357
BstNI CCWGG 1 cut(s) 618
BstNSI RCATGY 3 cut(s) 105, 452, 844
BstSCI CCNGG 1 cut(s) 616
BstSFI CTRYAG 2 cut(s) 411, 535
BstV1I GCAGC 6 cut(s) 199, 425, 491, 494, 521, 549
BstX2I RGATCY 1 cut(s) 516
BstYI RGATCY 1 cut(s) 516
BstZ17I GTATAC 1 cut(s) 814
BsuRI GGCC 2 cut(s) 65, 74
BtgI CCRYGG 1 cut(s) 417
BtgZI GCGATG 1 cut(s) 772
BtsCI GGATG 1 cut(s) 254
BtsI GCAGTG 1 cut(s) 654
BtsIMutI CAGTG 1 cut(s) 654
Cac8I GCNNGC 1 cut(s) 194
Cfr10I RCCGGY 1 cut(s) 70
CseI GACGC 1 cut(s) 140
Csp6I GTAC 1 cut(s) 629
CviAII CATG 6 cut(s) 102, 208, 418, 449, 496, 841
CviQI GTAC 1 cut(s) 629
DdeI CTNAG 2 cut(s) 632, 803
DpnI GATC 7 cut(s) 92, 244, 266, 392, 468, 518, 611
DpnII GATC 7 cut(s) 90, 242, 264, 390, 466, 516, 609
EaeI YGGCCR 2 cut(s) 63, 72
Eam1104I CTCTTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 396
Eco130I CCWWGG 2 cut(s) 417, 772
Eco24I GRGCYC 1 cut(s) 198
Eco88I CYCGRG 1 cut(s) 528
EcoRII CCWGG 1 cut(s) 616
EcoT14I CCWWGG 2 cut(s) 417, 772
EcoT22I ATGCAT 1 cut(s) 287
EcoT38I GRGCYC 1 cut(s) 198
ErhI CCWWGG 2 cut(s) 417, 772
FaeI CATG 6 cut(s) 105, 211, 421, 452, 499, 844
FatI CATG 6 cut(s) 101, 207, 417, 448, 495, 840
FauI CCCGC 1 cut(s) 185
FauNDI CATATG 1 cut(s) 725
FbaI TGATCA 1 cut(s) 466
FblI GTMKAC 1 cut(s) 813
Fnu4HI GCNGC 8 cut(s) 6, 140, 213, 414, 480, 483, 535, 538
FokI GGATG 1 cut(s) 241
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 8 cut(s) 6, 140, 213, 414, 480, 483, 535, 538
FspBI CTAG 3 cut(s) 311, 626, 773
GluI GCNGC 8 cut(s) 6, 140, 213, 414, 480, 483, 535, 538
GsuI CTGGAG 1 cut(s) 7
HaeIII GGCC 2 cut(s) 65, 74
HapII CCGG 1 cut(s) 71
HgaI GACGC 1 cut(s) 140
Hin1II CATG 6 cut(s) 105, 211, 421, 452, 499, 844
HinfI GANTC 3 cut(s) 37, 602, 634
HpaII CCGG 1 cut(s) 71
HphI GGTGA 2 cut(s) 517, 597
Hpy166II GTNNAC 1 cut(s) 814
Hpy188I TCNGA 2 cut(s) 42, 259
Hpy188III TCNNGA 2 cut(s) 240, 580
Hpy8I GTNNAC 1 cut(s) 814
HpyAV CCTTC 5 cut(s) 157, 452, 554, 637, 758
HpyCH4V TGCA 9 cut(s) 32, 105, 215, 285, 339, 413, 537, 723, 752
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 357
HpyF3I CTNAG 2 cut(s) 632, 803
Hsp92II CATG 6 cut(s) 105, 211, 421, 452, 499, 844
Ksp22I TGATCA 1 cut(s) 466
Kzo9I GATC 7 cut(s) 90, 242, 264, 390, 466, 516, 609
LguI GCTCTTC 1 cut(s) 396
LmnI GCTCC 1 cut(s) 356
LpnPI CCDG 6 cut(s) 37, 79, 84, 475, 603, 630
Lsp1109I GCAGC 6 cut(s) 199, 425, 491, 494, 521, 549
LweI GCATC 2 cut(s) 156, 294
MaeI CTAG 3 cut(s) 311, 626, 773
MaeIII GTNAC 2 cut(s) 314, 649
MalI GATC 7 cut(s) 92, 244, 266, 392, 468, 518, 611
MboI GATC 7 cut(s) 90, 242, 264, 390, 466, 516, 609
MboII GAAGA 3 cut(s) 228, 385, 413
MfeI CAATTG 1 cut(s) 718
MflI RGATCY 1 cut(s) 516
MhlI GDGCHC 1 cut(s) 198
MlsI TGGCCA 1 cut(s) 65
MluCI AATT 5 cut(s) 222, 573, 718, 756, 792
MluNI TGGCCA 1 cut(s) 65
MlyI GAGTC 2 cut(s) 46, 643
MmeI TCCRAC 2 cut(s) 207, 282
MnlI CCTC 6 cut(s) 188, 337, 524, 664, 714, 723
Mox20I TGGCCA 1 cut(s) 65
Mph1103I ATGCAT 1 cut(s) 287
MroXI GAANNNNTTC 1 cut(s) 223
MscI TGGCCA 1 cut(s) 65
MseI TTAA 1 cut(s) 86
Msp20I TGGCCA 1 cut(s) 65
MspA1I CMGCKG 1 cut(s) 192
MspI CCGG 1 cut(s) 71
MspR9I CCNGG 1 cut(s) 618
MunI CAATTG 1 cut(s) 718
Mva1269I GAATGC 1 cut(s) 353
MvaI CCWGG 1 cut(s) 618
MwoI GCNNNNNNNGC 2 cut(s) 71, 357
NcoI CCATGG 1 cut(s) 417
NdeI CATATG 1 cut(s) 725
NdeII GATC 7 cut(s) 90, 242, 264, 390, 466, 516, 609
NlaIII CATG 6 cut(s) 105, 211, 421, 452, 499, 844
NlaIV GGNNCC 2 cut(s) 82, 692
NmuCI GTSAC 2 cut(s) 314, 649
NsiI ATGCAT 1 cut(s) 287
NspI RCATGY 3 cut(s) 105, 452, 844
PciI ACATGT 2 cut(s) 448, 840
PciSI GCTCTTC 1 cut(s) 396
PctI GAATGC 1 cut(s) 353
PdmI GAANNNNTTC 1 cut(s) 223
PfeI GAWTC 1 cut(s) 602
PkrI GCNGC 8 cut(s) 7, 141, 214, 415, 481, 484, 536, 539
PleI GAGTC 2 cut(s) 45, 642
PpsI GAGTC 2 cut(s) 45, 642
PscI ACATGT 2 cut(s) 448, 840
Psp6I CCWGG 1 cut(s) 616
PspGI CCWGG 1 cut(s) 616
PspN4I GGNNCC 2 cut(s) 82, 692
PstI CTGCAG 2 cut(s) 415, 539
PsuI RGATCY 1 cut(s) 516
RsaI GTAC 1 cut(s) 630
RsaNI GTAC 1 cut(s) 629
SapI GCTCTTC 1 cut(s) 396
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 8 cut(s) 6, 140, 213, 414, 480, 483, 535, 538
Sau3AI GATC 7 cut(s) 90, 242, 264, 390, 466, 516, 609
ScaI AGTACT 1 cut(s) 630
SchI GAGTC 2 cut(s) 46, 643
ScrFI CCNGG 1 cut(s) 618
SduI GDGCHC 1 cut(s) 198
SfaNI GCATC 2 cut(s) 156, 294
SfcI CTRYAG 2 cut(s) 411, 535
SfiI GGCCNNNNNGGCC 1 cut(s) 71
SmlI CTYRAG 1 cut(s) 325
SmoI CTYRAG 1 cut(s) 325
Sse9I AATT 5 cut(s) 222, 573, 718, 756, 792
SsiI CCGC 2 cut(s) 140, 192
SspMI CTAG 3 cut(s) 311, 626, 773
StyD4I CCNGG 1 cut(s) 616
StyI CCWWGG 2 cut(s) 417, 772
TaqI TCGA 1 cut(s) 796
TasI AATT 5 cut(s) 222, 573, 718, 756, 792
TatI WGTACW 1 cut(s) 628
TauI GCSGC 1 cut(s) 142
TfiI GAWTC 1 cut(s) 602
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TscAI CASTG 1 cut(s) 654
TseFI GTSAC 2 cut(s) 314, 649
TseI GCWGC 7 cut(s) 5, 212, 413, 479, 482, 534, 537
Tsp45I GTSAC 2 cut(s) 314, 649
TspRI CASTG 1 cut(s) 654
XapI RAATTY 1 cut(s) 222
XceI RCATGY 3 cut(s) 105, 452, 844
XmaJI CCTAGG 1 cut(s) 772
XmiI GTMKAC 1 cut(s) 813
XmnI GAANNNNTTC 1 cut(s) 223
XspI CTAG 3 cut(s) 311, 626, 773
ZrmI AGTACT 1 cut(s) 630
Zsp2I ATGCAT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.