AT5G41590

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012957
Physical Location & Seq
Reverse (-)
16632086 .. 16634012
1927 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G41590.1

Sequence Viewer

Length: 666 bp
ATGTTCCCTTTCTTGAAGCAACGGTCGAGGTCGGTCCACGGTGAAGATGCACCGTCATCTACAGAGTCCACAGTCTCCGTCGCTGCCGCAGATATTGGAGGAGCGTGTACGACACTCACGGTGTGGAGAAAATCGCTTCTGGTGAGTTGTGAAGGATTCACGGTGATAGATTCGAATGGAGATTTGATTTACCGGGTCGATAATTATGCCCGAACCCGACCCGAGGAACTCATCCTCATGGATAAAGATGGAAACTCCCTCCTCCTCATGCATCGTACCAAGAAAATTACGCTAGTAGATAGTTGGGGAATCTATGAAGCAAATGATACAAAAGGAGAAACAAAAATACCAAAGTGCCCAACCTGGTACATGAGGAAGAACTTAAAGATGAATATTCTGAGCACCAAATCCGACATTTTGGCATACGTATATTCAGGATCGTTCGATAAGAAGAATTCATACATCATCAAAGGATCGTATAGATGTAAATCGTGTAAAATAGTGCACGTCCCATTGAACAAGACAGTGGTGGAGATCAAAAGGAAAGAGGTCAGAACCAAAGGAGTCCGGTTCGGTTCAGATGTTTTTGATCTGGTTGTTAATCCCGGTTTTGACACCGGTTTGGCAATGGCTTTGGTTTTGTTATTAGATCAAATGTTCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

221

Amino Acids

24.79

Weight (kDa)

9.21

Isoelectric Point (pI)

38.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 37 - 217 2.3e-30 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012957)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41590
fragaria_vesca FvH4_5g03300
malus_domestica MD06G1092800.v1.1 MD14G1113300.v1.1
prunus_persica Prupe.5G107300_v2.0.a1
pyrus_communis pycom06g08840
rosa_chinensis RchiOBHm_Chr7g0196481
rosa_laevigata RLG00000004010
rosa_multiflora Rmu_sc0024905.1_g000001 Rmu_sc0024906.1_g000001
rosa_roxburghii Rroxscaffold_3G00259260
rosa_rugosa Rorug07G0033800 Rorug07G0033900
rosa_samantha Rh7AG158200 Rh7BG160100 Rh7CG166500 Rh7DG159300
rosa_wichuraiana Rw7G013820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 87
AclWI GGATC 2 cut(s) 445, 481
AcsI RAATTY 1 cut(s) 454
AdeI CACNNNGTG 1 cut(s) 123
AfaI GTAC 3 cut(s) 109, 277, 368
AfiI CCNNNNNNNGG 1 cut(s) 223
AgeI ACCGGT 1 cut(s) 617
AgsI TTSAA 2 cut(s) 16, 517
AjiI CACGTC 1 cut(s) 508
AjnI CCWGG 1 cut(s) 362
Alw21I GWGCWC 2 cut(s) 404, 507
Alw26I GTCTC 1 cut(s) 79
Alw44I GTGCAC 1 cut(s) 503
AlwI GGATC 2 cut(s) 445, 481
Ama87I CYCGRG 1 cut(s) 221
ApaLI GTGCAC 1 cut(s) 503
ApeKI GCWGC 1 cut(s) 83
ApoI RAATTY 1 cut(s) 454
AsiGI ACCGGT 1 cut(s) 617
AspS9I GGNCC 1 cut(s) 34
AsuC2I CCSGG 2 cut(s) 194, 606
AsuHPI GGTGA 3 cut(s) 53, 154, 175
AsuII TTCGAA 1 cut(s) 173
AvaI CYCGRG 1 cut(s) 221
AvaII GGWCC 1 cut(s) 34
BaeGI GKGCMC 2 cut(s) 359, 507
BarI GAAGNNNNNNTAC 2 cut(s) 443, 475
Bbv12I GWGCWC 2 cut(s) 404, 507
BbvI GCAGC 1 cut(s) 70
BccI CCATC 1 cut(s) 242
BcgI CGANNNNNNTGC 2 cut(s) 188, 222
BciT130I CCWGG 1 cut(s) 364
BcnI CCSGG 2 cut(s) 194, 606
BcoDI GTCTC 1 cut(s) 79
BfaI CTAG 1 cut(s) 293
BfmI CTRYAG 1 cut(s) 60
BisI GCNGC 2 cut(s) 84, 87
BlsI GCNGC 2 cut(s) 85, 88
Bme1390I CCNGG 3 cut(s) 194, 364, 606
Bme18I GGWCC 1 cut(s) 34
BmeT110I CYCGRG 1 cut(s) 221
BmgBI CACGTC 1 cut(s) 508
BmgT120I GGNCC 1 cut(s) 34
BmrFI CCNGG 3 cut(s) 194, 364, 606
BmsI GCATC 2 cut(s) 37, 280
Bpu14I TTCGAA 1 cut(s) 173
BpuMI CCSGG 2 cut(s) 194, 606
BsaAI YACGTR 1 cut(s) 427
BsaBI GATNNNNATC 1 cut(s) 487
BsaJI CCNNGG 2 cut(s) 37, 222
BsaWI WCCGGW 2 cut(s) 567, 617
Bsc4I CCNNNNNNNGG 1 cut(s) 223
Bse118I RCCGGY 1 cut(s) 617
Bse3DI GCAATG 1 cut(s) 633
Bse8I GATNNNNATC 1 cut(s) 487
BseBI CCWGG 1 cut(s) 364
BseDI CCNNGG 2 cut(s) 37, 222
BseGI GGATG 1 cut(s) 231
BseJI GATNNNNATC 1 cut(s) 487
BseLI CCNNNNNNNGG 1 cut(s) 223
BseMI GCAATG 1 cut(s) 633
BseMII CTCAG 1 cut(s) 389
BseRI GAGGAG 3 cut(s) 114, 251, 254
BseSI GKGCMC 2 cut(s) 359, 507
BseXI GCAGC 1 cut(s) 70
Bsh1285I CGRYCG 1 cut(s) 26
BshTI ACCGGT 1 cut(s) 617
BsiEI CGRYCG 1 cut(s) 26
BsiHKAI GWGCWC 2 cut(s) 404, 507
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 4 cut(s) 193, 568, 606, 618
BslFI GGGAC 1 cut(s) 494
BslI CCNNNNNNNGG 1 cut(s) 223
BsmAI GTCTC 1 cut(s) 79
BsmFI GGGAC 1 cut(s) 494
BsoBI CYCGRG 1 cut(s) 221
Bsp119I TTCGAA 1 cut(s) 173
Bsp1286I GDGCHC 3 cut(s) 359, 404, 507
Bsp143I GATC 5 cut(s) 437, 473, 534, 589, 649
BspACI CCGC 1 cut(s) 87
BspCNI CTCAG 1 cut(s) 390
BspPI GGATC 2 cut(s) 445, 481
BspT104I TTCGAA 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 633
BsrFI RCCGGY 1 cut(s) 617
BssAI RCCGGY 1 cut(s) 617
BssECI CCNNGG 2 cut(s) 37, 222
BssMI GATC 5 cut(s) 437, 473, 534, 589, 649
Bst2UI CCWGG 1 cut(s) 364
Bst4CI ACNGT 7 cut(s) 24, 41, 54, 73, 121, 163, 526
BstBAI YACGTR 1 cut(s) 427
BstBI TTCGAA 1 cut(s) 173
BstDEI CTNAG 1 cut(s) 398
BstDSI CCRYGG 1 cut(s) 37
BstF5I GGATG 1 cut(s) 231
BstKTI GATC 5 cut(s) 440, 476, 537, 592, 652
BstMAI GTCTC 1 cut(s) 79
BstMBI GATC 5 cut(s) 437, 473, 534, 589, 649
BstMCI CGRYCG 1 cut(s) 26
BstNI CCWGG 1 cut(s) 364
BstSCI CCNGG 3 cut(s) 192, 362, 604
BstSFI CTRYAG 1 cut(s) 60
BstSLI GKGCMC 2 cut(s) 359, 507
BstSNI TACGTA 1 cut(s) 427
BstV1I GCAGC 1 cut(s) 70
BtgI CCRYGG 1 cut(s) 37
BtrI CACGTC 1 cut(s) 508
BtsCI GGATG 1 cut(s) 231
BtsIMutI CAGTG 1 cut(s) 531
Cfr10I RCCGGY 1 cut(s) 617
Cfr13I GGNCC 1 cut(s) 34
CsiI ACCWGGT 1 cut(s) 362
Csp6I GTAC 3 cut(s) 108, 276, 367
CspAI ACCGGT 1 cut(s) 617
CviAII CATG 3 cut(s) 238, 268, 370
CviJI RGCY 1 cut(s) 632
CviKI_1 RGCY 1 cut(s) 632
CviQI GTAC 3 cut(s) 108, 276, 367
DdeI CTNAG 1 cut(s) 398
DpnI GATC 5 cut(s) 439, 475, 536, 591, 651
DpnII GATC 5 cut(s) 437, 473, 534, 589, 649
DraIII CACNNNGTG 1 cut(s) 123
Eco105I TACGTA 1 cut(s) 427
Eco47I GGWCC 1 cut(s) 34
Eco88I CYCGRG 1 cut(s) 221
EcoRI GAATTC 1 cut(s) 454
EcoRII CCWGG 1 cut(s) 362
EcoT22I ATGCAT 1 cut(s) 273
FaeI CATG 3 cut(s) 241, 271, 373
FaiI YATR 9 cut(s) 207, 239, 269, 315, 371, 424, 430, 460, 480
FaqI GGGAC 1 cut(s) 494
FatI CATG 3 cut(s) 237, 267, 369
Fnu4HI GCNGC 2 cut(s) 84, 87
FokI GGATG 1 cut(s) 218
Fsp4HI GCNGC 2 cut(s) 84, 87
FspBI CTAG 1 cut(s) 293
GluI GCNGC 2 cut(s) 84, 87
HapII CCGG 4 cut(s) 193, 568, 606, 618
Hin1II CATG 3 cut(s) 241, 271, 373
HinfI GANTC 5 cut(s) 65, 156, 170, 309, 564
HpaII CCGG 4 cut(s) 193, 568, 606, 618
HphI GGTGA 3 cut(s) 53, 154, 175
Hpy166II GTNNAC 4 cut(s) 37, 69, 108, 505
Hpy188I TCNGA 4 cut(s) 399, 412, 554, 580
Hpy188III TCNNGA 2 cut(s) 13, 435
Hpy8I GTNNAC 4 cut(s) 37, 69, 108, 505
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 1 cut(s) 146
HpyCH4III ACNGT 7 cut(s) 24, 41, 54, 73, 121, 163, 526
HpyCH4IV ACGT 2 cut(s) 426, 507
HpyCH4V TGCA 3 cut(s) 50, 271, 505
HpyF3I CTNAG 1 cut(s) 398
HpySE526I ACGT 2 cut(s) 426, 507
Hsp92II CATG 3 cut(s) 241, 271, 373
Kzo9I GATC 5 cut(s) 437, 473, 534, 589, 649
LmnI GCTCC 1 cut(s) 101
LpnPI CCDG 9 cut(s) 125, 206, 349, 376, 420, 578, 581, 619, 631
Lsp1109I GCAGC 1 cut(s) 70
LweI GCATC 2 cut(s) 37, 280
MabI ACCWGGT 1 cut(s) 362
MaeI CTAG 1 cut(s) 293
MaeII ACGT 2 cut(s) 426, 507
MalI GATC 5 cut(s) 439, 475, 536, 591, 651
MboI GATC 5 cut(s) 437, 473, 534, 589, 649
MboII GAAGA 3 cut(s) 56, 388, 463
MhlI GDGCHC 3 cut(s) 359, 404, 507
MluCI AATT 3 cut(s) 202, 285, 454
MlyI GAGTC 2 cut(s) 74, 573
MmeI TCCRAC 1 cut(s) 435
MnlI CCTC 9 cut(s) 21, 92, 217, 245, 269, 272, 275, 366, 541
Mph1103I ATGCAT 1 cut(s) 273
MseI TTAA 3 cut(s) 383, 600, 664
MslI CAYNNNNRTG 1 cut(s) 236
MspI CCGG 4 cut(s) 193, 568, 606, 618
MspR9I CCNGG 3 cut(s) 194, 364, 606
MvaI CCWGG 1 cut(s) 364
NciI CCSGG 2 cut(s) 194, 606
NdeII GATC 5 cut(s) 437, 473, 534, 589, 649
NlaIII CATG 3 cut(s) 241, 271, 373
NsiI ATGCAT 1 cut(s) 273
NspV TTCGAA 1 cut(s) 173
PfeI GAWTC 3 cut(s) 156, 170, 309
PinAI ACCGGT 1 cut(s) 617
PkrI GCNGC 2 cut(s) 85, 88
PleI GAGTC 2 cut(s) 73, 572
PpsI GAGTC 2 cut(s) 73, 572
Ppu21I YACGTR 1 cut(s) 427
Psp6I CCWGG 1 cut(s) 362
PspGI CCWGG 1 cut(s) 362
PspPI GGNCC 1 cut(s) 34
RsaI GTAC 3 cut(s) 109, 277, 368
RsaNI GTAC 3 cut(s) 108, 276, 367
RseI CAYNNNNRTG 1 cut(s) 236
SaqAI TTAA 3 cut(s) 383, 600, 664
SatI GCNGC 2 cut(s) 84, 87
Sau3AI GATC 5 cut(s) 437, 473, 534, 589, 649
Sau96I GGNCC 1 cut(s) 34
SchI GAGTC 2 cut(s) 74, 573
ScrFI CCNGG 3 cut(s) 194, 364, 606
SduI GDGCHC 3 cut(s) 359, 404, 507
SetI ASST 5 cut(s) 32, 365, 429, 510, 552
SexAI ACCWGGT 1 cut(s) 362
SfaNI GCATC 2 cut(s) 37, 280
SfcI CTRYAG 1 cut(s) 60
SfuI TTCGAA 1 cut(s) 173
SinI GGWCC 1 cut(s) 34
SmiMI CAYNNNNRTG 1 cut(s) 236
SnaBI TACGTA 1 cut(s) 427
Sse9I AATT 3 cut(s) 202, 285, 454
SsiI CCGC 1 cut(s) 87
SspI AATATT 1 cut(s) 394
SspMI CTAG 1 cut(s) 293
StyD4I CCNGG 3 cut(s) 192, 362, 604
TaaI ACNGT 7 cut(s) 24, 41, 54, 73, 121, 163, 526
TaiI ACGT 2 cut(s) 429, 510
TaqI TCGA 4 cut(s) 26, 173, 198, 444
TaqII GACCGA 1 cut(s) 22
TasI AATT 3 cut(s) 202, 285, 454
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 3 cut(s) 156, 170, 309
Tru1I TTAA 3 cut(s) 383, 600, 664
Tru9I TTAA 3 cut(s) 383, 600, 664
TscAI CASTG 1 cut(s) 531
TseI GCWGC 1 cut(s) 83
TspDTI ATGAA 3 cut(s) 330, 404, 447
TspGWI ACGGA 1 cut(s) 67
TspRI CASTG 1 cut(s) 531
VneI GTGCAC 1 cut(s) 503
VpaK11BI GGWCC 1 cut(s) 34
XapI RAATTY 1 cut(s) 454
XspI CTAG 1 cut(s) 293
Zsp2I ATGCAT 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.