Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0012957

Physical Location & Seq

Genomic Coordinates Reverse (-)

11321192 .. 11322310

Gene Structure 1119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G107300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGAAGATTGTTCCTTTCTTGAAATCTTTGTCAAGGTCTGTCCATAATCAAGAACAACATGATCAGCACGATGAGCAGGAACTCAATACTGTTGGGGCTTGCACAACATTAACAGTGTGGAGAAAATCACTCCTGATTAGCTGCAAAGGGTTCACGGTGATCGATTCGAACGGAGATCTCGTTTATCGGGTCGACAACTACGTCGGGCATCCTGAGGAAGTCGTTCTCATGGATGCCTCTGGAAAATCTGTCCTCACAATGCGTCGTCGCAAGAAGCTTACTCTAGTTGACAGTTGGTTTGTGCACGAAGGAGAAGTGGGTGATTATTGTAGAACAAGAACATCAAAAAGCAGCCCAACGTTTTGCGTGAGGAAGAACATGAACATGTTAAACGCCAATCCCAACATACTTGCTTATGTATATCGAGAGGCATGGGGTCATAAAAGATATGCATATTTGATTGAAGGTTCTTACACGCATCGATCTTGCAAGGTATTGGATGAGTATAGTAATGTGGTAGCTGAGATCAAGAGGAAGGAGGCAAATATTGGAGGGGTTTCTTATGGGGTAGAGGTTTTTCATTTGATTGTGCATCCTGGCTTTGATGCTGGATTTGCAATGGCTCTTGTATTAGCATTAGATCAGTTGTTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOR

Protein Analysis

219

Amino Acids

24.74

Weight (kDa)

8.23

Isoelectric Point (pI)

42.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012957)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41590
fragaria_vesca	FvH4_5g03300
malus_domestica	MD06G1092800.v1.1 MD14G1113300.v1.1
prunus_persica	Prupe.5G107300_v2.0.a1
pyrus_communis	pycom06g08840
rosa_chinensis	RchiOBHm_Chr7g0196481
rosa_laevigata	RLG00000004010
rosa_multiflora	Rmu_sc0024905.1_g000001 Rmu_sc0024906.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259260
rosa_rugosa	Rorug07G0033800 Rorug07G0033900
rosa_samantha	Rh7AG158200 Rh7BG160100 Rh7CG166500 Rh7DG159300
rosa_wichuraiana	Rw7G013820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	200
AccI	GTMKAC	1 cut(s)	192
AclI	AACGTT	1 cut(s)	359
AflIII	ACRYGT	1 cut(s)	384
AgsI	TTSAA	2 cut(s)	22, 464
AjnI	CCWGG	1 cut(s)	595
AluBI	AGCT	3 cut(s)	141, 277, 521
AluI	AGCT	3 cut(s)	141, 277, 521
Alw21I	GWGCWC	1 cut(s)	306
Alw44I	GTGCAC	1 cut(s)	302
ApaLI	GTGCAC	1 cut(s)	302
ApeKI	GCWGC	2 cut(s)	141, 351
ArsI	GACNNNNNNTTYG	2 cut(s)	281, 313
Asp700I	GAANNNNTTC	1 cut(s)	222
AsuHPI	GGTGA	2 cut(s)	169, 332
AsuII	TTCGAA	1 cut(s)	167
AxyI	CCTNAGG	1 cut(s)	213
BaeGI	GKGCMC	1 cut(s)	306
Bbv12I	GWGCWC	1 cut(s)	306
BbvI	GCAGC	2 cut(s)	128, 363
BciT130I	CCWGG	1 cut(s)	597
BclI	TGATCA	1 cut(s)	61
BfaI	CTAG	1 cut(s)	284
BglII	AGATCT	1 cut(s)	175
BisI	GCNGC	2 cut(s)	142, 352
BlsI	GCNGC	2 cut(s)	143, 353
Bme1390I	CCNGG	1 cut(s)	597
BmrFI	CCNGG	1 cut(s)	597
BmsI	GCATC	5 cut(s)	217, 223, 487, 595, 601
Bpu14I	TTCGAA	1 cut(s)	167
Bsa29I	ATCGAT	2 cut(s)	162, 481
BsaXI	ACNNNNNCTCC	2 cut(s)	165, 195
Bse21I	CCTNAGG	1 cut(s)	213
Bse3DI	GCAATG	1 cut(s)	624
BseBI	CCWGG	1 cut(s)	597
BseCI	ATCGAT	2 cut(s)	162, 481
BseGI	GGATG	4 cut(s)	208, 238, 505, 592
BseMI	GCAATG	1 cut(s)	624
BseMII	CTCAG	2 cut(s)	204, 513
BseSI	GKGCMC	1 cut(s)	306
BseXI	GCAGC	2 cut(s)	128, 363
BshVI	ATCGAT	2 cut(s)	162, 481
BsiHKAI	GWGCWC	1 cut(s)	306
Bsp119I	TTCGAA	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp143I	GATC	6 cut(s)	61, 159, 175, 482, 525, 640
BspCNI	CTCAG	2 cut(s)	205, 514
BspDI	ATCGAT	2 cut(s)	162, 481
BspT104I	TTCGAA	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	624
BssMI	GATC	6 cut(s)	61, 159, 175, 482, 525, 640
Bst2UI	CCWGG	1 cut(s)	597
Bst4CI	ACNGT	4 cut(s)	91, 115, 157, 293
BstBI	TTCGAA	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	3 cut(s)	213, 522, 654
BstF5I	GGATG	4 cut(s)	208, 238, 505, 592
BstKTI	GATC	6 cut(s)	64, 162, 178, 485, 528, 643
BstMBI	GATC	6 cut(s)	61, 159, 175, 482, 525, 640
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 614
BstNI	CCWGG	1 cut(s)	597
BstNSI	RCATGY	1 cut(s)	388
BstSCI	CCNGG	1 cut(s)	595
BstSLI	GKGCMC	1 cut(s)	306
BstV1I	GCAGC	2 cut(s)	128, 363
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
Bsu15I	ATCGAT	2 cut(s)	162, 481
Bsu36I	CCTNAGG	1 cut(s)	213
BsuTUI	ATCGAT	2 cut(s)	162, 481
BtsCI	GGATG	4 cut(s)	208, 238, 505, 592
BtsIMutI	CAGTG	1 cut(s)	120
Cac8I	GCNNGC	1 cut(s)	100
ClaI	ATCGAT	2 cut(s)	162, 481
CseI	GACGC	1 cut(s)	251
CviAII	CATG	5 cut(s)	59, 229, 379, 385, 432
CviJI	RGCY	7 cut(s)	98, 141, 277, 354, 521, 600, 623
CviKI_1	RGCY	7 cut(s)	98, 141, 277, 354, 521, 600, 623
DdeI	CTNAG	3 cut(s)	213, 522, 654
DpnI	GATC	6 cut(s)	63, 161, 177, 484, 527, 642
DpnII	GATC	6 cut(s)	61, 159, 175, 482, 525, 640
DrdI	GACNNNNNNGTC	1 cut(s)	200
DseDI	GACNNNNNNGTC	1 cut(s)	200
Eco81I	CCTNAGG	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	595
EcoT22I	ATGCAT	1 cut(s)	454
FaeI	CATG	5 cut(s)	62, 232, 382, 388, 435
FatI	CATG	5 cut(s)	58, 228, 378, 384, 431
FbaI	TGATCA	1 cut(s)	61
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	2 cut(s)	142, 352
FokI	GGATG	4 cut(s)	195, 245, 512, 579
Fsp4HI	GCNGC	2 cut(s)	142, 352
FspBI	CTAG	1 cut(s)	284
GluI	GCNGC	2 cut(s)	142, 352
HgaI	GACGC	1 cut(s)	251
Hin1II	CATG	5 cut(s)	62, 232, 382, 388, 435
HincII	GTYRAC	2 cut(s)	193, 289
HindII	GTYRAC	2 cut(s)	193, 289
HindIII	AAGCTT	1 cut(s)	275
HinfI	GANTC	1 cut(s)	164
HphI	GGTGA	2 cut(s)	169, 332
Hpy166II	GTNNAC	4 cut(s)	153, 193, 289, 304
Hpy188III	TCNNGA	7 cut(s)	19, 50, 133, 212, 240, 425, 529
Hpy8I	GTNNAC	4 cut(s)	153, 193, 289, 304
Hpy99I	CGWCG	3 cut(s)	206, 267, 270
HpyAV	CCTTC	3 cut(s)	302, 458, 529
HpyCH4III	ACNGT	4 cut(s)	91, 115, 157, 293
HpyCH4IV	ACGT	2 cut(s)	201, 359
HpyCH4V	TGCA	7 cut(s)	102, 144, 304, 452, 489, 592, 617
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 614
HpyF3I	CTNAG	3 cut(s)	213, 522, 654
HpySE526I	ACGT	2 cut(s)	201, 359
Hsp92II	CATG	5 cut(s)	62, 232, 382, 388, 435
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	6 cut(s)	61, 159, 175, 482, 525, 640
LpnPI	CCDG	7 cut(s)	62, 146, 225, 225, 582, 594, 609
Lsp1109I	GCAGC	2 cut(s)	128, 363
LweI	GCATC	5 cut(s)	217, 223, 487, 595, 601
MaeI	CTAG	1 cut(s)	284
MaeII	ACGT	2 cut(s)	201, 359
MalI	GATC	6 cut(s)	63, 161, 177, 484, 527, 642
MboI	GATC	6 cut(s)	61, 159, 175, 482, 525, 640
MboII	GAAGA	2 cut(s)	16, 385
MflI	RGATCY	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	306
MnlI	CCTC	9 cut(s)	208, 247, 263, 363, 421, 525, 532, 545, 565
Mph1103I	ATGCAT	1 cut(s)	454
MroXI	GAANNNNTTC	1 cut(s)	222
MseI	TTAA	2 cut(s)	110, 389
MslI	CAYNNNNRTG	1 cut(s)	383
MspR9I	CCNGG	1 cut(s)	597
MvaI	CCWGG	1 cut(s)	597
MwoI	GCNNNNNNNGC	2 cut(s)	73, 614
NdeII	GATC	6 cut(s)	61, 159, 175, 482, 525, 640
NlaIII	CATG	5 cut(s)	62, 232, 382, 388, 435
NsiI	ATGCAT	1 cut(s)	454
NspI	RCATGY	1 cut(s)	388
NspV	TTCGAA	1 cut(s)	167
PciI	ACATGT	1 cut(s)	384
PcsI	WCGNNNNNNNCGW	2 cut(s)	177, 198
PdmI	GAANNNNTTC	1 cut(s)	222
PfeI	GAWTC	1 cut(s)	164
PkrI	GCNGC	2 cut(s)	143, 353
PscI	ACATGT	1 cut(s)	384
Psp1406I	AACGTT	1 cut(s)	359
Psp6I	CCWGG	1 cut(s)	595
PspGI	CCWGG	1 cut(s)	595
PsuI	RGATCY	1 cut(s)	175
RseI	CAYNNNNRTG	1 cut(s)	383
SalI	GTCGAC	1 cut(s)	191
SaqAI	TTAA	2 cut(s)	110, 389
SatI	GCNGC	2 cut(s)	142, 352
Sau3AI	GATC	6 cut(s)	61, 159, 175, 482, 525, 640
ScrFI	CCNGG	1 cut(s)	597
SduI	GDGCHC	1 cut(s)	306
SetI	ASST	9 cut(s)	38, 143, 204, 279, 362, 469, 495, 523, 576
SfaNI	GCATC	5 cut(s)	217, 223, 487, 595, 601
SfuI	TTCGAA	1 cut(s)	167
SmiMI	CAYNNNNRTG	1 cut(s)	383
SspI	AATATT	1 cut(s)	547
SspMI	CTAG	1 cut(s)	284
StyD4I	CCNGG	1 cut(s)	595
TaaI	ACNGT	4 cut(s)	91, 115, 157, 293
TaiI	ACGT	2 cut(s)	204, 362
TaqI	TCGA	5 cut(s)	162, 167, 192, 424, 481
TfiI	GAWTC	1 cut(s)	164
Tru1I	TTAA	2 cut(s)	110, 389
Tru9I	TTAA	2 cut(s)	110, 389
TscAI	CASTG	1 cut(s)	120
TseI	GCWGC	2 cut(s)	141, 351
TspDTI	ATGAA	3 cut(s)	17, 395, 569
TspGWI	ACGGA	1 cut(s)	186
TspRI	CASTG	1 cut(s)	120
VneI	GTGCAC	1 cut(s)	302
XceI	RCATGY	1 cut(s)	388
XmiI	GTMKAC	1 cut(s)	192
XmnI	GAANNNNTTC	1 cut(s)	222
XspI	CTAG	1 cut(s)	284
Zsp2I	ATGCAT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.