Rorug07G0033800

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0012957
Physical Location & Seq
Reverse (-)
2420047 .. 2422007
1961 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0033800.1

Sequence Viewer

Length: 807 bp
ATGGCAAATGTTAGAGGAAGAACATCAGGGATGCACATGGGAGAGAGATTGTCAACATTAACGCCCACACGTGTGAAGATTGTTCCTGGTTCTGGCTGGACAGATGACTCTAATGGCCACTATCTTCTTGTCGATCTGGAAGGTTTCAACAAGGAGAAGGTGAAGCTGGAGGTGAATACCACAGCTGGACATCTAACAGTCACCGGAGAAAGGCAAGTGAACGAGAGGGAACATGTCTATATTGAGGAAAATTTTCCAATACCAGCAAACTCAGACGTCGATAAGATCACCGGAAAGTTTGATGGTGAGATTCTCTATGTAACTGTACCAAAGGTTGTTGCAGTAGTACAAGAAAACAAGGAACCTGAAATAGTAGAAGTAAAGGAGCCCGAAATAATAGAAGCAAAAACGGAGCCTGAAATGGTAGAAGCAAAGATGGAGCCTGAATTAGTACAACCAAAGAAGGAGCCTGAAATAGTTCAAGAAAAGAAAAGACCTGAAATAATAGAGAATCAGAAGGTCGAAGCTGCTCCAGCAGCAAAAAACACACACCTAAGAGCGCCCAAAAACAATGATGGAAAGTACAGAAACAAATATGATGGCACAAATGATGCACAGCCAAACAGATTATTACGTGATGCTCGGATATACTTTTCTCCAGAGAATATAAGGAAGTGGGAGGAAGAAAAAGGCATTTTGAGAAGTGCAATGGAGGTGTTGAGCAAAAACAAAGGGATGGTTATAACAGCTATAGTAGCATTCTCGTTAGGGATGTTCGTATCTCAAAAGTTCAAAACAGGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

268

Amino Acids

30.27

Weight (kDa)

5.9

Isoelectric Point (pI)

47.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP20 PF00011 34 - 127 1.1e-08 Hsp20/alpha crystallin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012957)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41590
fragaria_vesca FvH4_5g03300
malus_domestica MD06G1092800.v1.1 MD14G1113300.v1.1
prunus_persica Prupe.5G107300_v2.0.a1
pyrus_communis pycom06g08840
rosa_chinensis RchiOBHm_Chr7g0196481
rosa_laevigata RLG00000004010
rosa_multiflora Rmu_sc0024905.1_g000001 Rmu_sc0024906.1_g000001
rosa_roxburghii Rroxscaffold_3G00259260
rosa_rugosa Rorug07G0033800 Rorug07G0033900
rosa_samantha Rh7AG158200 Rh7BG160100 Rh7CG166500 Rh7DG159300
rosa_wichuraiana Rw7G013820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 743
AatII GACGTC 1 cut(s) 279
AcoI YGGCCR 1 cut(s) 115
AcsI RAATTY 1 cut(s) 250
AcvI CACGTG 1 cut(s) 71
AcyI GRCGYC 1 cut(s) 276
AfaI GTAC 4 cut(s) 327, 348, 453, 584
AfiI CCNNNNNNNGG 2 cut(s) 92, 210
AflIII ACRYGT 3 cut(s) 68, 70, 232
AgsI TTSAA 3 cut(s) 148, 482, 793
AjnI CCWGG 1 cut(s) 85
AleI CACNNNNGTG 1 cut(s) 71
AluBI AGCT 4 cut(s) 166, 185, 527, 749
AluI AGCT 4 cut(s) 166, 185, 527, 749
AoxI GGCC 1 cut(s) 115
ApeKI GCWGC 2 cut(s) 527, 536
ApoI RAATTY 1 cut(s) 250
Asp700I GAANNNNTTC 2 cut(s) 252, 477
AspLEI GCGC 1 cut(s) 562
AsuHPI GGTGA 5 cut(s) 172, 184, 193, 280, 317
BalI TGGCCA 1 cut(s) 117
BanII GRGCYC 1 cut(s) 390
BbrPI CACGTG 1 cut(s) 71
BbvI GCAGC 2 cut(s) 514, 548
BccI CCATC 5 cut(s) 296, 430, 569, 593, 730
BciT130I CCWGG 1 cut(s) 87
BfmI CTRYAG 1 cut(s) 750
BfoI RGCGCY 1 cut(s) 563
BisI GCNGC 2 cut(s) 528, 537
BlsI GCNGC 2 cut(s) 529, 538
Bme1390I CCNGG 1 cut(s) 87
BmiI GGNNCC 5 cut(s) 363, 387, 414, 441, 468
BmrFI CCNGG 1 cut(s) 87
BmsI GCATC 3 cut(s) 21, 601, 628
BpmI CTGGAG 3 cut(s) 188, 516, 642
BsaAI YACGTR 2 cut(s) 71, 635
BsaHI GRCGYC 1 cut(s) 276
BsaWI WCCGGW 2 cut(s) 203, 290
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 210
Bse3DI GCAATG 1 cut(s) 714
BseBI CCWGG 1 cut(s) 87
BseGI GGATG 3 cut(s) 36, 741, 777
BseLI CCNNNNNNNGG 2 cut(s) 92, 210
BseMI GCAATG 1 cut(s) 714
BseMII CTCAG 1 cut(s) 285
BseXI GCAGC 2 cut(s) 514, 548
BshFI GGCC 1 cut(s) 117
BsiSI CCGG 2 cut(s) 204, 291
BslI CCNNNNNNNGG 2 cut(s) 92, 210
BsmI GAATGC 1 cut(s) 758
BsnI GGCC 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 390
Bsp143I GATC 2 cut(s) 133, 285
BspANI GGCC 1 cut(s) 117
BspCNI CTCAG 1 cut(s) 284
BspLI GGNNCC 5 cut(s) 363, 387, 414, 441, 468
BsrDI GCAATG 1 cut(s) 714
BssMI GATC 2 cut(s) 133, 285
BssNI GRCGYC 1 cut(s) 276
Bst2UI CCWGG 1 cut(s) 87
Bst4CI ACNGT 2 cut(s) 199, 325
BstACI GRCGYC 1 cut(s) 276
BstBAI YACGTR 2 cut(s) 71, 635
BstDEI CTNAG 2 cut(s) 271, 554
BstF5I GGATG 3 cut(s) 36, 741, 777
BstH2I RGCGCY 1 cut(s) 563
BstHHI GCGC 1 cut(s) 562
BstKTI GATC 2 cut(s) 136, 288
BstMBI GATC 2 cut(s) 133, 285
BstMWI GCNNNNNNNGC 3 cut(s) 533, 536, 755
BstNI CCWGG 1 cut(s) 87
BstNSI RCATGY 1 cut(s) 236
BstSCI CCNGG 1 cut(s) 85
BstSFI CTRYAG 1 cut(s) 750
BstV1I GCAGC 2 cut(s) 514, 548
BsuRI GGCC 1 cut(s) 117
BtsCI GGATG 3 cut(s) 36, 741, 777
CfoI GCGC 1 cut(s) 562
Csp6I GTAC 4 cut(s) 326, 347, 452, 583
CviAII CATG 2 cut(s) 37, 233
CviQI GTAC 4 cut(s) 326, 347, 452, 583
DdeI CTNAG 2 cut(s) 271, 554
DpnI GATC 2 cut(s) 135, 287
DpnII GATC 2 cut(s) 133, 285
EaeI YGGCCR 1 cut(s) 115
Eco24I GRGCYC 1 cut(s) 390
Eco72I CACGTG 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 85
EcoT38I GRGCYC 1 cut(s) 390
FaeI CATG 2 cut(s) 40, 236
FaiI YATR 9 cut(s) 38, 234, 240, 318, 597, 649, 668, 743, 752
FatI CATG 2 cut(s) 36, 232
Fnu4HI GCNGC 2 cut(s) 528, 537
FokI GGATG 3 cut(s) 43, 748, 784
FriOI GRGCYC 1 cut(s) 390
Fsp4HI GCNGC 2 cut(s) 528, 537
GlaI GCGC 1 cut(s) 561
GluI GCNGC 2 cut(s) 528, 537
GsuI CTGGAG 3 cut(s) 188, 516, 642
HaeII RGCGCY 1 cut(s) 563
HaeIII GGCC 1 cut(s) 117
HapII CCGG 2 cut(s) 204, 291
HhaI GCGC 1 cut(s) 562
Hin1I GRCGYC 1 cut(s) 276
Hin1II CATG 2 cut(s) 40, 236
Hin6I GCGC 1 cut(s) 560
HinP1I GCGC 1 cut(s) 560
HincII GTYRAC 1 cut(s) 54
HindII GTYRAC 1 cut(s) 54
HinfI GANTC 3 cut(s) 107, 310, 511
HpaII CCGG 2 cut(s) 204, 291
HphI GGTGA 5 cut(s) 172, 184, 193, 280, 317
Hpy166II GTNNAC 2 cut(s) 54, 220
Hpy188I TCNGA 3 cut(s) 274, 516, 645
Hpy188III TCNNGA 3 cut(s) 137, 482, 659
Hpy8I GTNNAC 2 cut(s) 54, 220
Hpy99I CGWCG 1 cut(s) 281
HpyAV CCTTC 4 cut(s) 134, 151, 457, 511
HpyCH4III ACNGT 2 cut(s) 199, 325
HpyCH4IV ACGT 3 cut(s) 70, 276, 634
HpyCH4V TGCA 4 cut(s) 34, 341, 614, 707
HpyF10VI GCNNNNNNNGC 3 cut(s) 533, 536, 755
HpyF3I CTNAG 2 cut(s) 271, 554
HpySE526I ACGT 3 cut(s) 70, 276, 634
Hsp92I GRCGYC 1 cut(s) 276
Hsp92II CATG 2 cut(s) 40, 236
HspAI GCGC 1 cut(s) 560
Kzo9I GATC 2 cut(s) 133, 285
LmnI GCTCC 5 cut(s) 385, 412, 439, 466, 535
Lsp1109I GCAGC 2 cut(s) 514, 548
LweI GCATC 3 cut(s) 21, 601, 628
MaeII ACGT 3 cut(s) 70, 276, 634
MaeIII GTNAC 2 cut(s) 199, 319
MalI GATC 2 cut(s) 135, 287
MboI GATC 2 cut(s) 133, 285
MboII GAAGA 4 cut(s) 30, 88, 116, 695
MhlI GDGCHC 1 cut(s) 390
MlsI TGGCCA 1 cut(s) 117
MluCI AATT 2 cut(s) 250, 446
MluNI TGGCCA 1 cut(s) 117
MlyI GAGTC 1 cut(s) 101
MnlI CCTC 6 cut(s) 8, 163, 219, 238, 673, 706
Mox20I TGGCCA 1 cut(s) 117
MroXI GAANNNNTTC 2 cut(s) 252, 477
MscI TGGCCA 1 cut(s) 117
MseI TTAA 1 cut(s) 59
MslI CAYNNNNRTG 1 cut(s) 71
Msp20I TGGCCA 1 cut(s) 117
MspA1I CMGCKG 1 cut(s) 185
MspI CCGG 2 cut(s) 204, 291
MspR9I CCNGG 1 cut(s) 87
Mva1269I GAATGC 1 cut(s) 758
MvaI CCWGG 1 cut(s) 87
MwoI GCNNNNNNNGC 3 cut(s) 533, 536, 755
NdeII GATC 2 cut(s) 133, 285
NlaIII CATG 2 cut(s) 40, 236
NlaIV GGNNCC 5 cut(s) 363, 387, 414, 441, 468
NmuCI GTSAC 1 cut(s) 199
NspI RCATGY 1 cut(s) 236
OliI CACNNNNGTG 1 cut(s) 71
PciI ACATGT 1 cut(s) 232
PctI GAATGC 1 cut(s) 758
PdmI GAANNNNTTC 2 cut(s) 252, 477
PfeI GAWTC 2 cut(s) 310, 511
PkrI GCNGC 2 cut(s) 529, 538
PleI GAGTC 1 cut(s) 101
PmaCI CACGTG 1 cut(s) 71
PmlI CACGTG 1 cut(s) 71
PpsI GAGTC 1 cut(s) 101
Ppu21I YACGTR 2 cut(s) 71, 635
PscI ACATGT 1 cut(s) 232
PsiI TTATAA 1 cut(s) 743
Psp6I CCWGG 1 cut(s) 85
PspCI CACGTG 1 cut(s) 71
PspGI CCWGG 1 cut(s) 85
PspN4I GGNNCC 5 cut(s) 363, 387, 414, 441, 468
PvuII CAGCTG 1 cut(s) 185
RsaI GTAC 4 cut(s) 327, 348, 453, 584
RsaNI GTAC 4 cut(s) 326, 347, 452, 583
RseI CAYNNNNRTG 1 cut(s) 71
SaqAI TTAA 1 cut(s) 59
SatI GCNGC 2 cut(s) 528, 537
Sau3AI GATC 2 cut(s) 133, 285
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 1 cut(s) 87
SduI GDGCHC 1 cut(s) 390
SfaNI GCATC 3 cut(s) 21, 601, 628
SfcI CTRYAG 1 cut(s) 750
SmiMI CAYNNNNRTG 1 cut(s) 71
Sse9I AATT 2 cut(s) 250, 446
StyD4I CCNGG 1 cut(s) 85
TaaI ACNGT 2 cut(s) 199, 325
TaiI ACGT 3 cut(s) 73, 279, 637
TaqI TCGA 3 cut(s) 132, 279, 522
TasI AATT 2 cut(s) 250, 446
TatI WGTACW 3 cut(s) 346, 451, 582
TfiI GAWTC 2 cut(s) 310, 511
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 2 cut(s) 527, 536
Tsp45I GTSAC 1 cut(s) 199
TspGWI ACGGA 1 cut(s) 425
XapI RAATTY 1 cut(s) 250
XceI RCATGY 1 cut(s) 236
XmnI GAANNNNTTC 2 cut(s) 252, 477
ZraI GACGTC 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.