FvH4_5g03300

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0012957
Physical Location & Seq
Reverse (-)
1964901 .. 1966405
1505 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g03300.t1

Sequence Viewer

Length: 705 bp
ATGAAGATTGTTCCTTTCTTCAGATCTTTGTCAAGGTCGGTTCATGAAGAACACAATGATCACGATCATGATCAACAGGAATCAAAGACCGGTATTGATATCAGTGGCCCTAGTGGGGCTTGCACATCGATATCGTTTACAGTGTGGAGAAAATCTCTTGTGATCAGCTGTAAAGGGTTCACAGTTATCGATTCTAATGGAGATCTGGTTTATCGGGTCGACAACTATGTCGGACATCCTCGAGAAGTTACTCTCATGGATGGCTCTGGGAAATCCGTCCTTACAATGCGTCGTAACAAGAAGTTTAGCCTGGTGGAGAGCTGGTTTGTGTACGAAGGTGAAGTGGGAGACTTCTGCTGCACAGAAAGAACAATTAGAGCAGCAGCAAAAAGCTGGCCAGTGTTTTGTGTGAAGAAGAACCAGAACTTGTTGAATGCTAAATATCCCAGTATAATTGCTCATGTATATCGTGAAGTATCTGGTAGTCATAGAAGATGTGCCTATGTGATTGAAGGTTCTTACACGCATCGATCATGTAAGGTATTGGAGGAGTTCTCGAGGAATGTGGTGGCTGAGATCAAGAGGAAGGAAGCAAATGTTGGAGGAGTTTCTTATGGGGTGGATGTTTTCCATTTGGTTGTGCATCCTGGATTTCATCCTGGATTTGCAATGGCGCTTGTGCTATTATTAGATCAGATGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

235

Amino Acids

26.38

Weight (kDa)

8.64

Isoelectric Point (pI)

36.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 45 - 231 9e-32 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012957)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41590
fragaria_vesca FvH4_5g03300
malus_domestica MD06G1092800.v1.1 MD14G1113300.v1.1
prunus_persica Prupe.5G107300_v2.0.a1
pyrus_communis pycom06g08840
rosa_chinensis RchiOBHm_Chr7g0196481
rosa_laevigata RLG00000004010
rosa_multiflora Rmu_sc0024905.1_g000001 Rmu_sc0024906.1_g000001
rosa_roxburghii Rroxscaffold_3G00259260
rosa_rugosa Rorug07G0033800 Rorug07G0033900
rosa_samantha Rh7AG158200 Rh7BG160100 Rh7CG166500 Rh7DG159300
rosa_wichuraiana Rw7G013820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 227
AccI GTMKAC 1 cut(s) 219
AcoI YGGCCR 1 cut(s) 395
AcuI CTGAAG 1 cut(s) 4
AfaI GTAC 1 cut(s) 332
AfiI CCNNNNNNNGG 1 cut(s) 115
AgeI ACCGGT 1 cut(s) 89
AgsI TTSAA 2 cut(s) 433, 512
AjnI CCWGG 3 cut(s) 309, 646, 658
AjuI GAANNNNNNNTTGG 2 cut(s) 582, 614
AluBI AGCT 3 cut(s) 168, 321, 393
AluI AGCT 3 cut(s) 168, 321, 393
Alw26I GTCTC 1 cut(s) 342
Ama87I CYCGRG 2 cut(s) 240, 556
AoxI GGCC 2 cut(s) 106, 395
ApeKI GCWGC 3 cut(s) 357, 380, 383
AsiGI ACCGGT 1 cut(s) 89
AspLEI GCGC 1 cut(s) 676
AspS9I GGNCC 1 cut(s) 107
AsuHPI GGTGA 1 cut(s) 350
AvaI CYCGRG 2 cut(s) 240, 556
BalI TGGCCA 1 cut(s) 397
BbvI GCAGC 3 cut(s) 344, 392, 395
BccI CCATC 1 cut(s) 254
BciT130I CCWGG 3 cut(s) 311, 648, 660
BclI TGATCA 3 cut(s) 58, 70, 162
BcoDI GTCTC 1 cut(s) 342
BfaI CTAG 1 cut(s) 111
BfoI RGCGCY 1 cut(s) 677
BglII AGATCT 2 cut(s) 23, 202
BisI GCNGC 3 cut(s) 358, 381, 384
BlsI GCNGC 3 cut(s) 359, 382, 385
Bme1390I CCNGG 3 cut(s) 311, 648, 660
BmeT110I CYCGRG 2 cut(s) 240, 556
BmgT120I GGNCC 1 cut(s) 107
BmrFI CCNGG 3 cut(s) 311, 648, 660
BmrI ACTGGG 1 cut(s) 441
BmsI GCATC 2 cut(s) 535, 652
BmuI ACTGGG 1 cut(s) 441
BplI GAGNNNNNCTC 4 cut(s) 139, 171, 539, 571
Bsa29I ATCGAT 3 cut(s) 128, 189, 529
BsaBI GATNNNNATC 2 cut(s) 63, 69
BsaWI WCCGGW 1 cut(s) 89
BsaXI ACNNNNNCTCC 4 cut(s) 192, 222, 308, 338
Bsc4I CCNNNNNNNGG 1 cut(s) 115
Bse118I RCCGGY 1 cut(s) 89
Bse1I ACTGG 2 cut(s) 398, 447
Bse3DI GCAATG 1 cut(s) 675
Bse8I GATNNNNATC 2 cut(s) 63, 69
BseBI CCWGG 3 cut(s) 311, 648, 660
BseCI ATCGAT 3 cut(s) 128, 189, 529
BseGI GGATG 5 cut(s) 235, 265, 628, 643, 655
BseJI GATNNNNATC 2 cut(s) 63, 69
BseLI CCNNNNNNNGG 1 cut(s) 115
BseMI GCAATG 1 cut(s) 675
BseMII CTCAG 1 cut(s) 564
BseNI ACTGG 2 cut(s) 398, 447
BseRI GAGGAG 2 cut(s) 563, 618
BseXI GCAGC 3 cut(s) 344, 392, 395
BsgI GTGCAG 1 cut(s) 343
BshFI GGCC 2 cut(s) 108, 397
BshTI ACCGGT 1 cut(s) 89
BshVI ATCGAT 3 cut(s) 128, 189, 529
BsiHKCI CYCGRG 2 cut(s) 240, 556
BsiSI CCGG 1 cut(s) 90
BslI CCNNNNNNNGG 1 cut(s) 115
BsmAI GTCTC 1 cut(s) 342
BsmI GAATGC 1 cut(s) 439
BsnI GGCC 2 cut(s) 108, 397
BsoBI CYCGRG 2 cut(s) 240, 556
Bsp143I GATC 9 cut(s) 23, 58, 64, 70, 162, 202, 530, 576, 691
BspANI GGCC 2 cut(s) 108, 397
BspCNI CTCAG 1 cut(s) 565
BspDI ATCGAT 3 cut(s) 128, 189, 529
BspHI TCATGA 2 cut(s) 43, 67
BsrDI GCAATG 1 cut(s) 675
BsrFI RCCGGY 1 cut(s) 89
BsrI ACTGG 2 cut(s) 398, 447
BssAI RCCGGY 1 cut(s) 89
BssMI GATC 9 cut(s) 23, 58, 64, 70, 162, 202, 530, 576, 691
Bst2UI CCWGG 3 cut(s) 311, 648, 660
Bst4CI ACNGT 2 cut(s) 142, 184
BstC8I GCNNGC 2 cut(s) 121, 395
BstDEI CTNAG 1 cut(s) 573
BstF5I GGATG 5 cut(s) 235, 265, 628, 643, 655
BstH2I RGCGCY 1 cut(s) 677
BstHHI GCGC 1 cut(s) 676
BstKTI GATC 9 cut(s) 26, 61, 67, 73, 165, 205, 533, 579, 694
BstMAI GTCTC 1 cut(s) 342
BstMBI GATC 9 cut(s) 23, 58, 64, 70, 162, 202, 530, 576, 691
BstNI CCWGG 3 cut(s) 311, 648, 660
BstSCI CCNGG 3 cut(s) 309, 646, 658
BstV1I GCAGC 3 cut(s) 344, 392, 395
BstX2I RGATCY 2 cut(s) 23, 202
BstYI RGATCY 2 cut(s) 23, 202
Bsu15I ATCGAT 3 cut(s) 128, 189, 529
BsuRI GGCC 2 cut(s) 108, 397
BsuTUI ATCGAT 3 cut(s) 128, 189, 529
BtsCI GGATG 5 cut(s) 235, 265, 628, 643, 655
BtsIMutI CAGTG 3 cut(s) 109, 147, 405
Cac8I GCNNGC 2 cut(s) 121, 395
CciI TCATGA 2 cut(s) 43, 67
CfoI GCGC 1 cut(s) 676
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 1 cut(s) 107
ClaI ATCGAT 3 cut(s) 128, 189, 529
CseI GACGC 1 cut(s) 278
Csp6I GTAC 1 cut(s) 331
CspAI ACCGGT 1 cut(s) 89
CviAII CATG 5 cut(s) 44, 68, 256, 461, 534
CviJI RGCY 9 cut(s) 108, 119, 168, 264, 309, 321, 393, 397, 572
CviKI_1 RGCY 9 cut(s) 108, 119, 168, 264, 309, 321, 393, 397, 572
CviQI GTAC 1 cut(s) 331
DdeI CTNAG 1 cut(s) 573
DpnI GATC 9 cut(s) 25, 60, 66, 72, 164, 204, 532, 578, 693
DpnII GATC 9 cut(s) 23, 58, 64, 70, 162, 202, 530, 576, 691
DrdI GACNNNNNNGTC 1 cut(s) 227
DseDI GACNNNNNNGTC 1 cut(s) 227
EaeI YGGCCR 1 cut(s) 395
Eco32I GATATC 2 cut(s) 100, 132
Eco57I CTGAAG 1 cut(s) 4
Eco88I CYCGRG 2 cut(s) 240, 556
EcoRII CCWGG 3 cut(s) 309, 646, 658
EcoRV GATATC 2 cut(s) 100, 132
FaeI CATG 5 cut(s) 47, 71, 259, 464, 537
FatI CATG 5 cut(s) 43, 67, 255, 460, 533
FbaI TGATCA 3 cut(s) 58, 70, 162
FblI GTMKAC 1 cut(s) 219
Fnu4HI GCNGC 3 cut(s) 358, 381, 384
FokI GGATG 5 cut(s) 222, 272, 630, 635, 642
Fsp4HI GCNGC 3 cut(s) 358, 381, 384
FspBI CTAG 1 cut(s) 111
GlaI GCGC 1 cut(s) 675
GluI GCNGC 3 cut(s) 358, 381, 384
HaeII RGCGCY 1 cut(s) 677
HaeIII GGCC 2 cut(s) 108, 397
HapII CCGG 1 cut(s) 90
HgaI GACGC 1 cut(s) 278
HhaI GCGC 1 cut(s) 676
Hin1II CATG 5 cut(s) 47, 71, 259, 464, 537
Hin6I GCGC 1 cut(s) 674
HinP1I GCGC 1 cut(s) 674
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HinfI GANTC 2 cut(s) 80, 191
HpaII CCGG 1 cut(s) 90
HphI GGTGA 1 cut(s) 350
Hpy166II GTNNAC 4 cut(s) 138, 180, 220, 331
Hpy188I TCNGA 3 cut(s) 23, 233, 696
Hpy188III TCNNGA 7 cut(s) 44, 62, 68, 242, 470, 556, 580
Hpy8I GTNNAC 4 cut(s) 138, 180, 220, 331
Hpy99I CGWCG 1 cut(s) 294
HpyAV CCTTC 3 cut(s) 329, 506, 580
HpyCH4III ACNGT 2 cut(s) 142, 184
HpyCH4V TGCA 4 cut(s) 123, 360, 643, 668
HpyF3I CTNAG 1 cut(s) 573
Hsp92II CATG 5 cut(s) 47, 71, 259, 464, 537
HspAI GCGC 1 cut(s) 674
Ksp22I TGATCA 3 cut(s) 58, 70, 162
Kzo9I GATC 9 cut(s) 23, 58, 64, 70, 162, 202, 530, 576, 691
Lsp1109I GCAGC 3 cut(s) 344, 392, 395
LweI GCATC 2 cut(s) 535, 652
MaeI CTAG 1 cut(s) 111
MaeIII GTNAC 2 cut(s) 247, 293
MalI GATC 9 cut(s) 25, 60, 66, 72, 164, 204, 532, 578, 693
MboI GATC 9 cut(s) 23, 58, 64, 70, 162, 202, 530, 576, 691
MboII GAAGA 6 cut(s) 10, 16, 59, 424, 427, 504
MflI RGATCY 2 cut(s) 23, 202
MlsI TGGCCA 1 cut(s) 397
MluCI AATT 2 cut(s) 372, 453
MluNI TGGCCA 1 cut(s) 397
MmeI TCCRAC 2 cut(s) 211, 580
MnlI CCTC 5 cut(s) 249, 541, 552, 576, 596
Mox20I TGGCCA 1 cut(s) 397
MscI TGGCCA 1 cut(s) 397
MslI CAYNNNNRTG 1 cut(s) 66
Msp20I TGGCCA 1 cut(s) 397
MspA1I CMGCKG 1 cut(s) 168
MspI CCGG 1 cut(s) 90
MspR9I CCNGG 3 cut(s) 311, 648, 660
Mva1269I GAATGC 1 cut(s) 439
MvaI CCWGG 3 cut(s) 311, 648, 660
NdeII GATC 9 cut(s) 23, 58, 64, 70, 162, 202, 530, 576, 691
NlaIII CATG 5 cut(s) 47, 71, 259, 464, 537
PaeR7I CTCGAG 2 cut(s) 240, 556
PagI TCATGA 2 cut(s) 43, 67
PctI GAATGC 1 cut(s) 439
PfeI GAWTC 2 cut(s) 80, 191
PfoI TCCNGGA 2 cut(s) 646, 658
PinAI ACCGGT 1 cut(s) 89
PkrI GCNGC 3 cut(s) 359, 382, 385
Psp6I CCWGG 3 cut(s) 309, 646, 658
PspGI CCWGG 3 cut(s) 309, 646, 658
PspPI GGNCC 1 cut(s) 107
PsuI RGATCY 2 cut(s) 23, 202
PvuII CAGCTG 1 cut(s) 168
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
RseI CAYNNNNRTG 1 cut(s) 66
SalI GTCGAC 1 cut(s) 218
SatI GCNGC 3 cut(s) 358, 381, 384
Sau3AI GATC 9 cut(s) 23, 58, 64, 70, 162, 202, 530, 576, 691
Sau96I GGNCC 1 cut(s) 107
ScrFI CCNGG 3 cut(s) 311, 648, 660
SetI ASST 7 cut(s) 38, 170, 323, 340, 395, 517, 543
SfaNI GCATC 2 cut(s) 535, 652
Sfr274I CTCGAG 2 cut(s) 240, 556
SlaI CTCGAG 2 cut(s) 240, 556
SmiMI CAYNNNNRTG 1 cut(s) 66
SmlI CTYRAG 2 cut(s) 240, 556
SmoI CTYRAG 2 cut(s) 240, 556
Sse9I AATT 2 cut(s) 372, 453
SspMI CTAG 1 cut(s) 111
StyD4I CCNGG 3 cut(s) 309, 646, 658
TaaI ACNGT 2 cut(s) 142, 184
TaqI TCGA 6 cut(s) 128, 189, 219, 241, 529, 557
TasI AATT 2 cut(s) 372, 453
TfiI GAWTC 2 cut(s) 80, 191
TscAI CASTG 3 cut(s) 109, 147, 405
TseI GCWGC 3 cut(s) 357, 380, 383
TspDTI ATGAA 4 cut(s) 17, 32, 60, 644
TspGWI ACGGA 1 cut(s) 265
TspRI CASTG 3 cut(s) 109, 147, 405
XhoI CTCGAG 2 cut(s) 240, 556
XmiI GTMKAC 1 cut(s) 219
XspI CTAG 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.