Rroxscaffold_3G00259260

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0012957
Physical Location & Seq
Reverse (-)
53666813 .. 53667824
1012 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00259260.1

Sequence Viewer

Length: 693 bp
ATGAAGATTGTTCCTTTCTTCAAATCTTTGTCAAGGTCGGTTCATGAAGAACAAAATGATCGTGATGACCAAGAATCAAAAGCAGGTATCGATAGCAGTGGCCCTAGTGGGGCTTGCACATCGATATCATTAACAGTATGGAGAAAATCTCTTGTAATTAGCTGTAAAGGGTTCACAGTGATCGATTCCAATGGAGATCTGGTTTATCGGGTAGACAACTATGTCGGTCATCCTCAAGAAGTCACTCTCATGGATGGCTCTGGGAAATCGGTCCTCACAATGCGTCGTAACAAGAAGTTTAGTCTGGTAGAGAGCTGGTTCGTGTACGAAGGAGACGTGGGAGACTTTTTCACAGCAAGAACAACTAGAGCAGGTCCAAAGAGTTGGCCGGTTTTTTGCGTGAGGAAGAACAAGAACTTGTTAAATGCCAATCCCAGTACACTTGCCCATGTATATCGTGAAGCATCGGGTAGTCATAAAAGATGTGCTTATGTGATTGAAGGGTCTTACACGCATCGATCATGCAAGGTATTGGAGGAGTTCTCGAGGAATGTGGTGGCTGAGATTAACAGGAAGGAAACAAATGTTGGAGGAGTTTCTTATGGGCTGGAGGTTTTCCATTTGGTTGTGCATCCTGGATTTGATCCTGGATTTGCAATGGCGCTTGTGCTATTATTAGATCAAATGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

230

Amino Acids

25.65

Weight (kDa)

8.55

Isoelectric Point (pI)

36.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 43 - 227 2.1e-32 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012957)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41590
fragaria_vesca FvH4_5g03300
malus_domestica MD06G1092800.v1.1 MD14G1113300.v1.1
prunus_persica Prupe.5G107300_v2.0.a1
pyrus_communis pycom06g08840
rosa_chinensis RchiOBHm_Chr7g0196481
rosa_laevigata RLG00000004010
rosa_multiflora Rmu_sc0024905.1_g000001 Rmu_sc0024906.1_g000001
rosa_roxburghii Rroxscaffold_3G00259260
rosa_rugosa Rorug07G0033800 Rorug07G0033900
rosa_samantha Rh7AG158200 Rh7BG160100 Rh7CG166500 Rh7DG159300
rosa_wichuraiana Rw7G013820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 221
Acc36I ACCTGC 2 cut(s) 74, 362
AccI GTMKAC 1 cut(s) 213
AclWI GGATC 1 cut(s) 638
AcoI YGGCCR 1 cut(s) 386
AfaI GTAC 2 cut(s) 326, 439
AfiI CCNNNNNNNGG 1 cut(s) 109
AgsI TTSAA 2 cut(s) 22, 500
AjiI CACGTC 1 cut(s) 337
AjnI CCWGG 2 cut(s) 634, 646
AjuI GAANNNNNNNTTGG 2 cut(s) 570, 602
AluBI AGCT 2 cut(s) 162, 315
AluI AGCT 2 cut(s) 162, 315
Alw26I GTCTC 2 cut(s) 327, 336
AlwI GGATC 1 cut(s) 638
Ama87I CYCGRG 1 cut(s) 544
AoxI GGCC 2 cut(s) 100, 386
AspLEI GCGC 1 cut(s) 664
AspS9I GGNCC 3 cut(s) 101, 271, 374
AvaI CYCGRG 1 cut(s) 544
AvaII GGWCC 2 cut(s) 271, 374
BccI CCATC 1 cut(s) 248
BciT130I CCWGG 2 cut(s) 636, 648
BcoDI GTCTC 2 cut(s) 327, 336
BfaI CTAG 2 cut(s) 105, 366
BfoI RGCGCY 1 cut(s) 665
BfuAI ACCTGC 2 cut(s) 74, 362
BglII AGATCT 1 cut(s) 196
Bme1390I CCNGG 2 cut(s) 636, 648
Bme18I GGWCC 2 cut(s) 271, 374
BmeT110I CYCGRG 1 cut(s) 544
BmgBI CACGTC 1 cut(s) 337
BmgT120I GGNCC 3 cut(s) 101, 271, 374
BmrFI CCNGG 2 cut(s) 636, 648
BmrI ACTGGG 1 cut(s) 429
BmsI GCATC 3 cut(s) 473, 523, 640
BmuI ACTGGG 1 cut(s) 429
BplI GAGNNNNNCTC 4 cut(s) 133, 165, 527, 559
BpmI CTGGAG 1 cut(s) 629
BpuEI CTTGAG 1 cut(s) 219
Bsa29I ATCGAT 4 cut(s) 90, 122, 183, 517
BsaXI ACNNNNNCTCC 2 cut(s) 186, 216
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse118I RCCGGY 1 cut(s) 388
Bse1I ACTGG 1 cut(s) 435
Bse3DI GCAATG 1 cut(s) 663
BseBI CCWGG 2 cut(s) 636, 648
BseCI ATCGAT 4 cut(s) 90, 122, 183, 517
BseGI GGATG 3 cut(s) 229, 259, 631
BseLI CCNNNNNNNGG 1 cut(s) 109
BseMI GCAATG 1 cut(s) 663
BseMII CTCAG 1 cut(s) 552
BseNI ACTGG 1 cut(s) 435
BseRI GAGGAG 2 cut(s) 551, 606
BshFI GGCC 2 cut(s) 102, 388
BshVI ATCGAT 4 cut(s) 90, 122, 183, 517
BsiHKCI CYCGRG 1 cut(s) 544
BsiSI CCGG 1 cut(s) 389
BslI CCNNNNNNNGG 1 cut(s) 109
BsmAI GTCTC 2 cut(s) 327, 336
BsmBI CGTCTC 1 cut(s) 327
BsnI GGCC 2 cut(s) 102, 388
BsoBI CYCGRG 1 cut(s) 544
Bsp143I GATC 6 cut(s) 58, 180, 196, 518, 643, 679
BspANI GGCC 2 cut(s) 102, 388
BspCNI CTCAG 1 cut(s) 553
BspDI ATCGAT 4 cut(s) 90, 122, 183, 517
BspHI TCATGA 1 cut(s) 43
BspMI ACCTGC 2 cut(s) 74, 362
BspPI GGATC 1 cut(s) 638
BsrDI GCAATG 1 cut(s) 663
BsrFI RCCGGY 1 cut(s) 388
BsrI ACTGG 1 cut(s) 435
BssAI RCCGGY 1 cut(s) 388
BssMI GATC 6 cut(s) 58, 180, 196, 518, 643, 679
Bst2UI CCWGG 2 cut(s) 636, 648
Bst4CI ACNGT 2 cut(s) 136, 178
BstC8I GCNNGC 1 cut(s) 115
BstDEI CTNAG 1 cut(s) 561
BstF5I GGATG 3 cut(s) 229, 259, 631
BstH2I RGCGCY 1 cut(s) 665
BstHHI GCGC 1 cut(s) 664
BstKTI GATC 6 cut(s) 61, 183, 199, 521, 646, 682
BstMAI GTCTC 2 cut(s) 327, 336
BstMBI GATC 6 cut(s) 58, 180, 196, 518, 643, 679
BstNI CCWGG 2 cut(s) 636, 648
BstSCI CCNGG 2 cut(s) 634, 646
BstX2I RGATCY 1 cut(s) 196
BstXI CCANNNNNNTGG 1 cut(s) 384
BstYI RGATCY 1 cut(s) 196
Bsu15I ATCGAT 4 cut(s) 90, 122, 183, 517
BsuRI GGCC 2 cut(s) 102, 388
BsuTUI ATCGAT 4 cut(s) 90, 122, 183, 517
BtrI CACGTC 1 cut(s) 337
BtsCI GGATG 3 cut(s) 229, 259, 631
BtsI GCAGTG 1 cut(s) 103
BtsIMutI CAGTG 2 cut(s) 103, 183
BveI ACCTGC 2 cut(s) 74, 362
Cac8I GCNNGC 1 cut(s) 115
CciI TCATGA 1 cut(s) 43
CfoI GCGC 1 cut(s) 664
Cfr10I RCCGGY 1 cut(s) 388
Cfr13I GGNCC 3 cut(s) 101, 271, 374
ClaI ATCGAT 4 cut(s) 90, 122, 183, 517
CseI GACGC 1 cut(s) 272
Csp6I GTAC 2 cut(s) 325, 438
CviAII CATG 4 cut(s) 44, 250, 449, 522
CviJI RGCY 8 cut(s) 102, 113, 162, 258, 315, 388, 560, 607
CviKI_1 RGCY 8 cut(s) 102, 113, 162, 258, 315, 388, 560, 607
CviQI GTAC 2 cut(s) 325, 438
DdeI CTNAG 1 cut(s) 561
DpnI GATC 6 cut(s) 60, 182, 198, 520, 645, 681
DpnII GATC 6 cut(s) 58, 180, 196, 518, 643, 679
DrdI GACNNNNNNGTC 1 cut(s) 221
DseDI GACNNNNNNGTC 1 cut(s) 221
EaeI YGGCCR 1 cut(s) 386
Eco32I GATATC 1 cut(s) 126
Eco47I GGWCC 2 cut(s) 271, 374
Eco88I CYCGRG 1 cut(s) 544
EcoRII CCWGG 2 cut(s) 634, 646
EcoRV GATATC 1 cut(s) 126
Esp3I CGTCTC 1 cut(s) 327
FaeI CATG 4 cut(s) 47, 253, 452, 525
FalI AAGNNNNNCTT 2 cut(s) 472, 504
FatI CATG 4 cut(s) 43, 249, 448, 521
FblI GTMKAC 1 cut(s) 213
FokI GGATG 3 cut(s) 216, 266, 618
FspBI CTAG 2 cut(s) 105, 366
GlaI GCGC 1 cut(s) 663
GsuI CTGGAG 1 cut(s) 629
HaeII RGCGCY 1 cut(s) 665
HaeIII GGCC 2 cut(s) 102, 388
HapII CCGG 1 cut(s) 389
HgaI GACGC 1 cut(s) 272
HhaI GCGC 1 cut(s) 664
Hin1II CATG 4 cut(s) 47, 253, 452, 525
Hin6I GCGC 1 cut(s) 662
HinP1I GCGC 1 cut(s) 662
HinfI GANTC 2 cut(s) 74, 185
HpaII CCGG 1 cut(s) 389
Hpy166II GTNNAC 4 cut(s) 174, 214, 325, 440
Hpy188III TCNNGA 5 cut(s) 44, 62, 236, 458, 544
Hpy8I GTNNAC 4 cut(s) 174, 214, 325, 440
Hpy99I CGWCG 1 cut(s) 288
HpyAV CCTTC 3 cut(s) 323, 494, 568
HpyCH4III ACNGT 2 cut(s) 136, 178
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 4 cut(s) 117, 525, 631, 656
HpyF3I CTNAG 1 cut(s) 561
HpySE526I ACGT 1 cut(s) 336
Hsp92II CATG 4 cut(s) 47, 253, 452, 525
HspAI GCGC 1 cut(s) 662
Kzo9I GATC 6 cut(s) 58, 180, 196, 518, 643, 679
LweI GCATC 3 cut(s) 473, 523, 640
MaeI CTAG 2 cut(s) 105, 366
MaeII ACGT 1 cut(s) 336
MaeIII GTNAC 2 cut(s) 241, 287
MalI GATC 6 cut(s) 60, 182, 198, 520, 645, 681
MboI GATC 6 cut(s) 58, 180, 196, 518, 643, 679
MboII GAAGA 4 cut(s) 10, 16, 59, 418
MflI RGATCY 1 cut(s) 196
MluCI AATT 1 cut(s) 156
MmeI TCCRAC 1 cut(s) 568
MnlI CCTC 7 cut(s) 243, 284, 396, 529, 540, 584, 604
MseI TTAA 4 cut(s) 131, 422, 567, 691
MslI CAYNNNNRTG 1 cut(s) 248
MspI CCGG 1 cut(s) 389
MspR9I CCNGG 2 cut(s) 636, 648
MvaI CCWGG 2 cut(s) 636, 648
NdeII GATC 6 cut(s) 58, 180, 196, 518, 643, 679
NlaIII CATG 4 cut(s) 47, 253, 452, 525
NmuCI GTSAC 1 cut(s) 241
PaeR7I CTCGAG 1 cut(s) 544
PagI TCATGA 1 cut(s) 43
PcsI WCGNNNNNNNCGW 1 cut(s) 333
PfeI GAWTC 2 cut(s) 74, 185
PfoI TCCNGGA 2 cut(s) 634, 646
Psp6I CCWGG 2 cut(s) 634, 646
PspGI CCWGG 2 cut(s) 634, 646
PspPI GGNCC 3 cut(s) 101, 271, 374
PsuI RGATCY 1 cut(s) 196
RsaI GTAC 2 cut(s) 326, 439
RsaNI GTAC 2 cut(s) 325, 438
RseI CAYNNNNRTG 1 cut(s) 248
SaqAI TTAA 4 cut(s) 131, 422, 567, 691
Sau3AI GATC 6 cut(s) 58, 180, 196, 518, 643, 679
Sau96I GGNCC 3 cut(s) 101, 271, 374
ScrFI CCNGG 2 cut(s) 636, 648
SetI ASST 8 cut(s) 38, 88, 164, 317, 339, 376, 531, 615
SfaNI GCATC 3 cut(s) 473, 523, 640
Sfr274I CTCGAG 1 cut(s) 544
SinI GGWCC 2 cut(s) 271, 374
SlaI CTCGAG 1 cut(s) 544
SmiMI CAYNNNNRTG 1 cut(s) 248
SmlI CTYRAG 2 cut(s) 234, 544
SmoI CTYRAG 2 cut(s) 234, 544
Sse9I AATT 1 cut(s) 156
SspMI CTAG 2 cut(s) 105, 366
StyD4I CCNGG 2 cut(s) 634, 646
TaaI ACNGT 2 cut(s) 136, 178
TaiI ACGT 1 cut(s) 339
TaqI TCGA 5 cut(s) 90, 122, 183, 517, 545
TaqII GACCGA 2 cut(s) 215, 259
TasI AATT 1 cut(s) 156
TatI WGTACW 1 cut(s) 437
TfiI GAWTC 2 cut(s) 74, 185
Tru1I TTAA 4 cut(s) 131, 422, 567, 691
Tru9I TTAA 4 cut(s) 131, 422, 567, 691
TscAI CASTG 2 cut(s) 103, 183
TseFI GTSAC 1 cut(s) 241
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 3 cut(s) 17, 32, 60
TspRI CASTG 2 cut(s) 103, 183
VpaK11BI GGWCC 2 cut(s) 271, 374
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
XhoI CTCGAG 1 cut(s) 544
XmiI GTMKAC 1 cut(s) 213
XspI CTAG 2 cut(s) 105, 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.