pycom06g08840

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0012957
Physical Location & Seq
Reverse (-)
14054329 .. 14055397
1069 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g08840.2

Sequence Viewer

Length: 678 bp
ATGAAGTCTGTTCCTTTGTTGAAATCTTTGTCTAGGTCCGTCCATAATCATCAAGAAAAACATGATCACCAAGAATACAAGGCCACTGATAGTTGTACTTCCGGGGCCTGCGCATCATTAACAGTGTGGAGAAAATCCCTTCTAATTAGCTGTAAAGGGTTCACGGTCATCGATTCCAATGGAGATCTCGTTTATCGGGTGGACAACTACGTCGGACATCCTGAGGAAGTCATTCTGATGGATGGCTCTGGAAAATCTGTCCTCACAATGCGTCGCCGAAAGAAGCTTAGTCTCGTTGATGGTTGGTTTGTGCACGAAGGGGAAACTGGCGGTTGTTGCACAAAAAGAGCAACCGCAGCATCAAAAAGTAGGCCAACGTTTTACGTGAGGAAGAACATGAGCATGCTAAATACCAATCCCAGTAGTCTACTTGCCTATGTGTATCGCGAGACATGTGGTCACAAAAGACATGCATATGTGATTGAAGGTTCTTACACGCACAGATCATGCAAGGTATCAGATGAGTCGAGGAATGTGGTAGCTGAGATCAAGAAAAAAGAAGCAAATATTGGAGGTGTTTCTTATGGGGTAGATGTTTTTCATTTGATTGTGCATCATGGCTTTGATTCTGGATTTGCAATGGCTCTTGTATTAGTATTAGATCAGTTGTTTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

226

Amino Acids

25.06

Weight (kDa)

9.12

Isoelectric Point (pI)

48.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012957)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41590
fragaria_vesca FvH4_5g03300
malus_domestica MD06G1092800.v1.1 MD14G1113300.v1.1
prunus_persica Prupe.5G107300_v2.0.a1
pyrus_communis pycom06g08840
rosa_chinensis RchiOBHm_Chr7g0196481
rosa_laevigata RLG00000004010
rosa_multiflora Rmu_sc0024905.1_g000001 Rmu_sc0024906.1_g000001
rosa_roxburghii Rroxscaffold_3G00259260
rosa_rugosa Rorug07G0033800 Rorug07G0033900
rosa_samantha Rh7AG158200 Rh7BG160100 Rh7CG166500 Rh7DG159300
rosa_wichuraiana Rw7G013820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 209
Acc16I TGCGCA 1 cut(s) 112
AccI GTMKAC 1 cut(s) 427
AccII CGCG 1 cut(s) 447
AciI CCGC 2 cut(s) 330, 354
AclI AACGTT 1 cut(s) 377
AfaI GTAC 1 cut(s) 97
AflIII ACRYGT 1 cut(s) 452
AgsI TTSAA 2 cut(s) 22, 485
AhdI GACNNNNNGTC 1 cut(s) 456
AjuI GAANNNNNNNTTGG 2 cut(s) 552, 584
AluBI AGCT 3 cut(s) 150, 286, 542
AluI AGCT 3 cut(s) 150, 286, 542
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 2 cut(s) 296, 443
Alw44I GTGCAC 1 cut(s) 311
AoxI GGCC 3 cut(s) 81, 105, 371
ApaLI GTGCAC 1 cut(s) 311
ApeKI GCWGC 1 cut(s) 356
Asp700I GAANNNNTTC 1 cut(s) 231
AspLEI GCGC 1 cut(s) 113
AspS9I GGNCC 2 cut(s) 36, 105
AsuC2I CCSGG 1 cut(s) 103
AsuHPI GGTGA 1 cut(s) 59
AvaII GGWCC 1 cut(s) 36
AxyI CCTNAGG 1 cut(s) 222
BaeGI GKGCMC 1 cut(s) 315
Bbv12I GWGCWC 1 cut(s) 315
BbvI GCAGC 1 cut(s) 368
BccI CCATC 3 cut(s) 232, 236, 293
BclI TGATCA 1 cut(s) 64
BcnI CCSGG 1 cut(s) 103
BcoDI GTCTC 2 cut(s) 296, 443
BfaI CTAG 1 cut(s) 33
BglII AGATCT 1 cut(s) 184
BisI GCNGC 1 cut(s) 357
BlsI GCNGC 1 cut(s) 358
Bme1390I CCNGG 1 cut(s) 103
Bme18I GGWCC 1 cut(s) 36
BmeRI GACNNNNNGTC 1 cut(s) 456
BmgT120I GGNCC 2 cut(s) 36, 105
BmiI GGNNCC 1 cut(s) 106
BmrFI CCNGG 1 cut(s) 103
BmrI ACTGGG 1 cut(s) 414
BmsI GCATC 3 cut(s) 122, 368, 622
BmuI ACTGGG 1 cut(s) 414
BpuMI CCSGG 1 cut(s) 103
Bsa29I ATCGAT 1 cut(s) 171
BsaAI YACGTR 1 cut(s) 385
BsaJI CCNNGG 1 cut(s) 102
BsaXI ACNNNNNCTCC 2 cut(s) 174, 204
Bse1I ACTGG 2 cut(s) 331, 420
Bse21I CCTNAGG 1 cut(s) 222
Bse3DI GCAATG 1 cut(s) 645
BseCI ATCGAT 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 102
BseGI GGATG 2 cut(s) 217, 247
BseMI GCAATG 1 cut(s) 645
BseMII CTCAG 2 cut(s) 213, 534
BseNI ACTGG 2 cut(s) 331, 420
BseSI GKGCMC 1 cut(s) 315
BseXI GCAGC 1 cut(s) 368
Bsh1236I CGCG 1 cut(s) 447
BshFI GGCC 3 cut(s) 83, 107, 373
BshVI ATCGAT 1 cut(s) 171
BsiHKAI GWGCWC 1 cut(s) 315
BsiSI CCGG 1 cut(s) 102
BsmAI GTCTC 2 cut(s) 296, 443
BsnI GGCC 3 cut(s) 83, 107, 373
Bsp1286I GDGCHC 1 cut(s) 315
Bsp143I GATC 5 cut(s) 64, 184, 503, 546, 661
Bsp68I TCGCGA 1 cut(s) 447
BspACI CCGC 2 cut(s) 330, 354
BspANI GGCC 3 cut(s) 83, 107, 373
BspCNI CTCAG 2 cut(s) 214, 535
BspDI ATCGAT 1 cut(s) 171
BspFNI CGCG 1 cut(s) 447
BspLI GGNNCC 1 cut(s) 106
BsrDI GCAATG 1 cut(s) 645
BsrI ACTGG 2 cut(s) 331, 420
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 5 cut(s) 64, 184, 503, 546, 661
Bst4CI ACNGT 2 cut(s) 124, 166
BstBAI YACGTR 1 cut(s) 385
BstC8I GCNNGC 2 cut(s) 109, 404
BstDEI CTNAG 4 cut(s) 222, 287, 543, 675
BstF5I GGATG 2 cut(s) 217, 247
BstFNI CGCG 1 cut(s) 447
BstHHI GCGC 1 cut(s) 113
BstKTI GATC 5 cut(s) 67, 187, 506, 549, 664
BstMAI GTCTC 2 cut(s) 296, 443
BstMBI GATC 5 cut(s) 64, 184, 503, 546, 661
BstMWI GCNNNNNNNGC 2 cut(s) 336, 356
BstNSI RCATGY 3 cut(s) 406, 456, 473
BstSCI CCNGG 1 cut(s) 101
BstSLI GKGCMC 1 cut(s) 315
BstUI CGCG 1 cut(s) 447
BstV1I GCAGC 1 cut(s) 368
BstX2I RGATCY 1 cut(s) 184
BstYI RGATCY 1 cut(s) 184
Bsu15I ATCGAT 1 cut(s) 171
Bsu36I CCTNAGG 1 cut(s) 222
BsuRI GGCC 3 cut(s) 83, 107, 373
BsuTUI ATCGAT 1 cut(s) 171
BtsCI GGATG 2 cut(s) 217, 247
BtsIMutI CAGTG 2 cut(s) 84, 129
BtuMI TCGCGA 1 cut(s) 447
Cac8I GCNNGC 2 cut(s) 109, 404
CfoI GCGC 1 cut(s) 113
Cfr13I GGNCC 2 cut(s) 36, 105
ClaI ATCGAT 1 cut(s) 171
CseI GACGC 1 cut(s) 260
Csp6I GTAC 1 cut(s) 96
CviAII CATG 7 cut(s) 62, 397, 403, 453, 470, 507, 617
CviJI RGCY 9 cut(s) 83, 107, 150, 246, 286, 373, 542, 621, 644
CviKI_1 RGCY 9 cut(s) 83, 107, 150, 246, 286, 373, 542, 621, 644
CviQI GTAC 1 cut(s) 96
DdeI CTNAG 4 cut(s) 222, 287, 543, 675
DpnI GATC 5 cut(s) 66, 186, 505, 548, 663
DpnII GATC 5 cut(s) 64, 184, 503, 546, 661
DrdI GACNNNNNNGTC 1 cut(s) 209
DriI GACNNNNNGTC 1 cut(s) 456
DseDI GACNNNNNNGTC 1 cut(s) 209
Eam1105I GACNNNNNGTC 1 cut(s) 456
Eco47I GGWCC 1 cut(s) 36
Eco81I CCTNAGG 1 cut(s) 222
EcoO109I RGGNCCY 1 cut(s) 105
EcoT22I ATGCAT 1 cut(s) 475
FaeI CATG 7 cut(s) 65, 400, 406, 456, 473, 510, 620
FatI CATG 7 cut(s) 61, 396, 402, 452, 469, 506, 616
FauNDI CATATG 1 cut(s) 475
FbaI TGATCA 1 cut(s) 64
FblI GTMKAC 1 cut(s) 427
Fnu4HI GCNGC 1 cut(s) 357
FokI GGATG 2 cut(s) 204, 254
Fsp4HI GCNGC 1 cut(s) 357
FspBI CTAG 1 cut(s) 33
FspI TGCGCA 1 cut(s) 112
GlaI GCGC 1 cut(s) 112
GluI GCNGC 1 cut(s) 357
HaeIII GGCC 3 cut(s) 83, 107, 373
HapII CCGG 1 cut(s) 102
HgaI GACGC 1 cut(s) 260
HhaI GCGC 1 cut(s) 113
Hin1II CATG 7 cut(s) 65, 400, 406, 456, 473, 510, 620
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HindIII AAGCTT 1 cut(s) 284
HinfI GANTC 3 cut(s) 173, 524, 626
HpaII CCGG 1 cut(s) 102
HphI GGTGA 1 cut(s) 59
Hpy166II GTNNAC 4 cut(s) 162, 202, 313, 428
Hpy188I TCNGA 3 cut(s) 215, 237, 520
Hpy188III TCNNGA 6 cut(s) 53, 221, 249, 446, 550, 630
Hpy8I GTNNAC 4 cut(s) 162, 202, 313, 428
Hpy99I CGWCG 2 cut(s) 215, 276
HpyAV CCTTC 3 cut(s) 149, 311, 479
HpyCH4III ACNGT 2 cut(s) 124, 166
HpyCH4IV ACGT 3 cut(s) 210, 377, 384
HpyCH4V TGCA 6 cut(s) 313, 339, 473, 510, 613, 638
HpyF10VI GCNNNNNNNGC 2 cut(s) 336, 356
HpyF3I CTNAG 4 cut(s) 222, 287, 543, 675
HpySE526I ACGT 3 cut(s) 210, 377, 384
Hsp92II CATG 7 cut(s) 65, 400, 406, 456, 473, 510, 620
HspAI GCGC 1 cut(s) 111
Ksp22I TGATCA 1 cut(s) 64
Kzo9I GATC 5 cut(s) 64, 184, 503, 546, 661
LpnPI CCDG 7 cut(s) 115, 121, 234, 234, 312, 433, 615
Lsp1109I GCAGC 1 cut(s) 368
LweI GCATC 3 cut(s) 122, 368, 622
MaeI CTAG 1 cut(s) 33
MaeII ACGT 3 cut(s) 210, 377, 384
MaeIII GTNAC 1 cut(s) 458
MalI GATC 5 cut(s) 66, 186, 505, 548, 663
MboI GATC 5 cut(s) 64, 184, 503, 546, 661
MboII GAAGA 1 cut(s) 403
MflI RGATCY 1 cut(s) 184
MhlI GDGCHC 1 cut(s) 315
MluCI AATT 1 cut(s) 144
MlyI GAGTC 1 cut(s) 533
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 5 cut(s) 217, 272, 381, 522, 566
Mph1103I ATGCAT 1 cut(s) 475
MroXI GAANNNNTTC 1 cut(s) 231
MseI TTAA 1 cut(s) 119
MslI CAYNNNNRTG 3 cut(s) 236, 401, 474
MspI CCGG 1 cut(s) 102
MspR9I CCNGG 1 cut(s) 103
MvnI CGCG 1 cut(s) 447
MwoI GCNNNNNNNGC 2 cut(s) 336, 356
NciI CCSGG 1 cut(s) 103
NdeI CATATG 1 cut(s) 475
NdeII GATC 5 cut(s) 64, 184, 503, 546, 661
NlaIII CATG 7 cut(s) 65, 400, 406, 456, 473, 510, 620
NlaIV GGNNCC 1 cut(s) 106
NmuCI GTSAC 1 cut(s) 458
NruI TCGCGA 1 cut(s) 447
NsbI TGCGCA 1 cut(s) 112
NsiI ATGCAT 1 cut(s) 475
NspI RCATGY 3 cut(s) 406, 456, 473
PaeI GCATGC 1 cut(s) 406
PciI ACATGT 1 cut(s) 452
PdmI GAANNNNTTC 1 cut(s) 231
PfeI GAWTC 2 cut(s) 173, 626
PkrI GCNGC 1 cut(s) 358
PleI GAGTC 1 cut(s) 532
PpsI GAGTC 1 cut(s) 532
Ppu21I YACGTR 1 cut(s) 385
PscI ACATGT 1 cut(s) 452
Psp1406I AACGTT 1 cut(s) 377
PspN4I GGNNCC 1 cut(s) 106
PspPI GGNCC 2 cut(s) 36, 105
PsuI RGATCY 1 cut(s) 184
RruI TCGCGA 1 cut(s) 447
RsaI GTAC 1 cut(s) 97
RsaNI GTAC 1 cut(s) 96
RseI CAYNNNNRTG 3 cut(s) 236, 401, 474
SaqAI TTAA 1 cut(s) 119
SatI GCNGC 1 cut(s) 357
Sau3AI GATC 5 cut(s) 64, 184, 503, 546, 661
Sau96I GGNCC 2 cut(s) 36, 105
SchI GAGTC 1 cut(s) 533
ScrFI CCNGG 1 cut(s) 103
SduI GDGCHC 1 cut(s) 315
SfaNI GCATC 3 cut(s) 122, 368, 622
SinI GGWCC 1 cut(s) 36
SmiMI CAYNNNNRTG 3 cut(s) 236, 401, 474
SphI GCATGC 1 cut(s) 406
Sse9I AATT 1 cut(s) 144
SsiI CCGC 2 cut(s) 330, 354
SspI AATATT 1 cut(s) 568
SspMI CTAG 1 cut(s) 33
StyD4I CCNGG 1 cut(s) 101
TaaI ACNGT 2 cut(s) 124, 166
TaiI ACGT 3 cut(s) 213, 380, 387
TaqI TCGA 2 cut(s) 171, 527
TasI AATT 1 cut(s) 144
TatI WGTACW 1 cut(s) 95
TfiI GAWTC 2 cut(s) 173, 626
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
TscAI CASTG 2 cut(s) 91, 129
TseFI GTSAC 1 cut(s) 458
TseI GCWGC 1 cut(s) 356
Tsp45I GTSAC 1 cut(s) 458
TspDTI ATGAA 2 cut(s) 17, 590
TspGWI ACGGA 1 cut(s) 28
TspRI CASTG 2 cut(s) 91, 129
VneI GTGCAC 1 cut(s) 311
VpaK11BI GGWCC 1 cut(s) 36
XceI RCATGY 3 cut(s) 406, 456, 473
XmiI GTMKAC 1 cut(s) 427
XmnI GAANNNNTTC 1 cut(s) 231
XspI CTAG 1 cut(s) 33
Zsp2I ATGCAT 1 cut(s) 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.