MD06G1092800.v1.1

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0012957
Physical Location & Seq
Reverse (-)
22264746 .. 22265806
1061 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1092800.v1.1.491

Sequence Viewer

Length: 684 bp
ATGAAGATTGTTCCTTTGTTGAAATCTTTATCTAGGACTAGGTCTGTCCATAATCATCAAGAACAACATGATCACCAAGAATACAAGGCCACTGATAGTTGTACTTCTGGGGCCTGCACATCATTAACAGTGTGGAGAAAATCCCTTCTAATTAGCTGTAAAGGGTTCACGGTCATCGATTCCAACGGAGATCTCGTTTATCGGGTGGACAACTACATCGGACATCCTGAGGAAGTCATTCTCATGGATGGCTCTGGAAAATCTGTCCTCACAATGCGTCGCCGAAAGAAGCTTAGTCTCGTTGATGGTTGGTTTGTGCACGAAGGGGAAACTGGCGGTTGTTGCACAAAAAGAGCAACTGCAGCATCAAAAAGTAGGCCAACGTTTTACGTGAGGAAGAACATGAACATGATAAATACCAATCCCAGTAGTCTACTTGCTTATGTGTATCGCGAGACATGTGGTCACAAAAGACATGCATATGTGATTGAAGGTTCTTACACGCACAGATCATGCAAAGTATCAGATGAGTCGAGGAATGTGGTAGCTGAGATCAAGAAAAAGGAAGCAAATATTGGAGGTGTTTCTTATGGGGTAGATGTTTTTCATTTGATTGTGCATCATGGCTTTGATTCTGGATTTGCAATGGCTCTTGTATTAGTATTAGATCAGTTGTTTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

228

Amino Acids

25.41

Weight (kDa)

9.13

Isoelectric Point (pI)

48.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 40 - 223 8.7e-31 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012957)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41590
fragaria_vesca FvH4_5g03300
malus_domestica MD06G1092800.v1.1 MD14G1113300.v1.1
prunus_persica Prupe.5G107300_v2.0.a1
pyrus_communis pycom06g08840
rosa_chinensis RchiOBHm_Chr7g0196481
rosa_laevigata RLG00000004010
rosa_multiflora Rmu_sc0024905.1_g000001 Rmu_sc0024906.1_g000001
rosa_roxburghii Rroxscaffold_3G00259260
rosa_rugosa Rorug07G0033800 Rorug07G0033900
rosa_samantha Rh7AG158200 Rh7BG160100 Rh7CG166500 Rh7DG159300
rosa_wichuraiana Rw7G013820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 433
AccII CGCG 1 cut(s) 453
AciI CCGC 1 cut(s) 336
AclI AACGTT 1 cut(s) 383
AfaI GTAC 1 cut(s) 103
AflIII ACRYGT 1 cut(s) 458
AgsI TTSAA 2 cut(s) 22, 491
AhdI GACNNNNNGTC 1 cut(s) 462
AjuI GAANNNNNNNTTGG 2 cut(s) 558, 590
AluBI AGCT 3 cut(s) 156, 292, 548
AluI AGCT 3 cut(s) 156, 292, 548
Alw21I GWGCWC 1 cut(s) 321
Alw26I GTCTC 2 cut(s) 302, 449
Alw44I GTGCAC 1 cut(s) 317
AoxI GGCC 3 cut(s) 87, 111, 377
ApaLI GTGCAC 1 cut(s) 317
ApeKI GCWGC 1 cut(s) 362
Asp700I GAANNNNTTC 1 cut(s) 237
AspS9I GGNCC 1 cut(s) 111
AsuHPI GGTGA 1 cut(s) 65
AxyI CCTNAGG 1 cut(s) 228
BaeGI GKGCMC 1 cut(s) 321
Bbv12I GWGCWC 1 cut(s) 321
BbvI GCAGC 1 cut(s) 374
BccI CCATC 2 cut(s) 242, 299
BclI TGATCA 1 cut(s) 70
BcoDI GTCTC 2 cut(s) 302, 449
BfaI CTAG 2 cut(s) 33, 39
BfmI CTRYAG 1 cut(s) 360
BglII AGATCT 1 cut(s) 190
BisI GCNGC 1 cut(s) 363
BlsI GCNGC 1 cut(s) 364
BmeRI GACNNNNNGTC 1 cut(s) 462
BmgT120I GGNCC 1 cut(s) 111
BmiI GGNNCC 1 cut(s) 112
BmrI ACTGGG 1 cut(s) 420
BmsI GCATC 2 cut(s) 374, 628
BmuI ACTGGG 1 cut(s) 420
Bsa29I ATCGAT 1 cut(s) 177
BsaAI YACGTR 1 cut(s) 391
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
Bse1I ACTGG 2 cut(s) 337, 426
Bse21I CCTNAGG 1 cut(s) 228
Bse3DI GCAATG 1 cut(s) 651
BseCI ATCGAT 1 cut(s) 177
BseGI GGATG 2 cut(s) 223, 253
BseMI GCAATG 1 cut(s) 651
BseMII CTCAG 2 cut(s) 219, 540
BseNI ACTGG 2 cut(s) 337, 426
BseSI GKGCMC 1 cut(s) 321
BseXI GCAGC 1 cut(s) 374
BsgI GTGCAG 1 cut(s) 100
Bsh1236I CGCG 1 cut(s) 453
BshFI GGCC 3 cut(s) 89, 113, 379
BshVI ATCGAT 1 cut(s) 177
BsiHKAI GWGCWC 1 cut(s) 321
BsmAI GTCTC 2 cut(s) 302, 449
BsnI GGCC 3 cut(s) 89, 113, 379
Bsp1286I GDGCHC 1 cut(s) 321
Bsp143I GATC 5 cut(s) 70, 190, 509, 552, 667
Bsp68I TCGCGA 1 cut(s) 453
BspACI CCGC 1 cut(s) 336
BspANI GGCC 3 cut(s) 89, 113, 379
BspCNI CTCAG 2 cut(s) 220, 541
BspDI ATCGAT 1 cut(s) 177
BspFNI CGCG 1 cut(s) 453
BspLI GGNNCC 1 cut(s) 112
BspMAI CTGCAG 1 cut(s) 364
BsrDI GCAATG 1 cut(s) 651
BsrI ACTGG 2 cut(s) 337, 426
BssMI GATC 5 cut(s) 70, 190, 509, 552, 667
Bst4CI ACNGT 2 cut(s) 130, 172
BstBAI YACGTR 1 cut(s) 391
BstC8I GCNNGC 1 cut(s) 115
BstDEI CTNAG 4 cut(s) 228, 293, 549, 681
BstF5I GGATG 2 cut(s) 223, 253
BstFNI CGCG 1 cut(s) 453
BstKTI GATC 5 cut(s) 73, 193, 512, 555, 670
BstMAI GTCTC 2 cut(s) 302, 449
BstMBI GATC 5 cut(s) 70, 190, 509, 552, 667
BstMWI GCNNNNNNNGC 2 cut(s) 342, 362
BstNSI RCATGY 2 cut(s) 462, 479
BstSFI CTRYAG 1 cut(s) 360
BstSLI GKGCMC 1 cut(s) 321
BstUI CGCG 1 cut(s) 453
BstV1I GCAGC 1 cut(s) 374
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
Bsu15I ATCGAT 1 cut(s) 177
Bsu36I CCTNAGG 1 cut(s) 228
BsuRI GGCC 3 cut(s) 89, 113, 379
BsuTUI ATCGAT 1 cut(s) 177
BtsCI GGATG 2 cut(s) 223, 253
BtsIMutI CAGTG 2 cut(s) 90, 135
BtuMI TCGCGA 1 cut(s) 453
Cac8I GCNNGC 1 cut(s) 115
Cfr13I GGNCC 1 cut(s) 111
ClaI ATCGAT 1 cut(s) 177
CseI GACGC 1 cut(s) 266
Csp6I GTAC 1 cut(s) 102
CviAII CATG 8 cut(s) 68, 244, 403, 409, 459, 476, 513, 623
CviJI RGCY 9 cut(s) 89, 113, 156, 252, 292, 379, 548, 627, 650
CviKI_1 RGCY 9 cut(s) 89, 113, 156, 252, 292, 379, 548, 627, 650
CviQI GTAC 1 cut(s) 102
DdeI CTNAG 4 cut(s) 228, 293, 549, 681
DpnI GATC 5 cut(s) 72, 192, 511, 554, 669
DpnII GATC 5 cut(s) 70, 190, 509, 552, 667
DriI GACNNNNNGTC 1 cut(s) 462
Eam1105I GACNNNNNGTC 1 cut(s) 462
Eco81I CCTNAGG 1 cut(s) 228
EcoO109I RGGNCCY 1 cut(s) 111
EcoT22I ATGCAT 1 cut(s) 481
FaeI CATG 8 cut(s) 71, 247, 406, 412, 462, 479, 516, 626
FatI CATG 8 cut(s) 67, 243, 402, 408, 458, 475, 512, 622
FauNDI CATATG 1 cut(s) 481
FbaI TGATCA 1 cut(s) 70
FblI GTMKAC 1 cut(s) 433
Fnu4HI GCNGC 1 cut(s) 363
FokI GGATG 2 cut(s) 210, 260
Fsp4HI GCNGC 1 cut(s) 363
FspBI CTAG 2 cut(s) 33, 39
GluI GCNGC 1 cut(s) 363
HaeIII GGCC 3 cut(s) 89, 113, 379
HgaI GACGC 1 cut(s) 266
Hin1II CATG 8 cut(s) 71, 247, 406, 412, 462, 479, 516, 626
HindIII AAGCTT 1 cut(s) 290
HinfI GANTC 3 cut(s) 179, 530, 632
HphI GGTGA 1 cut(s) 65
Hpy166II GTNNAC 4 cut(s) 168, 208, 319, 434
Hpy188I TCNGA 2 cut(s) 221, 526
Hpy188III TCNNGA 6 cut(s) 59, 227, 255, 452, 556, 636
Hpy8I GTNNAC 4 cut(s) 168, 208, 319, 434
Hpy99I CGWCG 1 cut(s) 282
HpyAV CCTTC 3 cut(s) 155, 317, 485
HpyCH4III ACNGT 2 cut(s) 130, 172
HpyCH4IV ACGT 2 cut(s) 383, 390
HpyCH4V TGCA 8 cut(s) 117, 319, 345, 362, 479, 516, 619, 644
HpyF10VI GCNNNNNNNGC 2 cut(s) 342, 362
HpyF3I CTNAG 4 cut(s) 228, 293, 549, 681
HpySE526I ACGT 2 cut(s) 383, 390
Hsp92II CATG 8 cut(s) 71, 247, 406, 412, 462, 479, 516, 626
Ksp22I TGATCA 1 cut(s) 70
Kzo9I GATC 5 cut(s) 70, 190, 509, 552, 667
LpnPI CCDG 7 cut(s) 93, 127, 240, 240, 318, 439, 621
Lsp1109I GCAGC 1 cut(s) 374
LweI GCATC 2 cut(s) 374, 628
MaeI CTAG 2 cut(s) 33, 39
MaeII ACGT 2 cut(s) 383, 390
MaeIII GTNAC 1 cut(s) 464
MalI GATC 5 cut(s) 72, 192, 511, 554, 669
MboI GATC 5 cut(s) 70, 190, 509, 552, 667
MboII GAAGA 2 cut(s) 16, 409
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 1 cut(s) 321
MluCI AATT 1 cut(s) 150
MlyI GAGTC 1 cut(s) 539
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 5 cut(s) 223, 278, 387, 528, 572
Mph1103I ATGCAT 1 cut(s) 481
MroXI GAANNNNTTC 1 cut(s) 237
MseI TTAA 1 cut(s) 125
MslI CAYNNNNRTG 3 cut(s) 242, 407, 480
MvnI CGCG 1 cut(s) 453
MwoI GCNNNNNNNGC 2 cut(s) 342, 362
NdeI CATATG 1 cut(s) 481
NdeII GATC 5 cut(s) 70, 190, 509, 552, 667
NlaIII CATG 8 cut(s) 71, 247, 406, 412, 462, 479, 516, 626
NlaIV GGNNCC 1 cut(s) 112
NmuCI GTSAC 1 cut(s) 464
NruI TCGCGA 1 cut(s) 453
NsiI ATGCAT 1 cut(s) 481
NspI RCATGY 2 cut(s) 462, 479
PciI ACATGT 1 cut(s) 458
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PdmI GAANNNNTTC 1 cut(s) 237
PfeI GAWTC 2 cut(s) 179, 632
PflFI GACNNNGTC 1 cut(s) 40
PkrI GCNGC 1 cut(s) 364
PleI GAGTC 1 cut(s) 538
PpsI GAGTC 1 cut(s) 538
Ppu21I YACGTR 1 cut(s) 391
PscI ACATGT 1 cut(s) 458
Psp1406I AACGTT 1 cut(s) 383
PspN4I GGNNCC 1 cut(s) 112
PspPI GGNCC 1 cut(s) 111
PstI CTGCAG 1 cut(s) 364
PsuI RGATCY 1 cut(s) 190
PsyI GACNNNGTC 1 cut(s) 40
RruI TCGCGA 1 cut(s) 453
RsaI GTAC 1 cut(s) 103
RsaNI GTAC 1 cut(s) 102
RseI CAYNNNNRTG 3 cut(s) 242, 407, 480
SaqAI TTAA 1 cut(s) 125
SatI GCNGC 1 cut(s) 363
Sau3AI GATC 5 cut(s) 70, 190, 509, 552, 667
Sau96I GGNCC 1 cut(s) 111
SchI GAGTC 1 cut(s) 539
SduI GDGCHC 1 cut(s) 321
SetI ASST 8 cut(s) 44, 158, 294, 386, 393, 496, 550, 583
SfaNI GCATC 2 cut(s) 374, 628
SfcI CTRYAG 1 cut(s) 360
SmiMI CAYNNNNRTG 3 cut(s) 242, 407, 480
Sse9I AATT 1 cut(s) 150
SsiI CCGC 1 cut(s) 336
SspI AATATT 1 cut(s) 574
SspMI CTAG 2 cut(s) 33, 39
TaaI ACNGT 2 cut(s) 130, 172
TaiI ACGT 2 cut(s) 386, 393
TaqI TCGA 2 cut(s) 177, 533
TasI AATT 1 cut(s) 150
TatI WGTACW 1 cut(s) 101
TfiI GAWTC 2 cut(s) 179, 632
Tru1I TTAA 1 cut(s) 125
Tru9I TTAA 1 cut(s) 125
TscAI CASTG 2 cut(s) 97, 135
TseFI GTSAC 1 cut(s) 464
TseI GCWGC 1 cut(s) 362
Tsp45I GTSAC 1 cut(s) 464
TspDTI ATGAA 3 cut(s) 17, 419, 596
TspGWI ACGGA 1 cut(s) 201
TspRI CASTG 2 cut(s) 97, 135
Tth111I GACNNNGTC 1 cut(s) 40
VneI GTGCAC 1 cut(s) 317
XceI RCATGY 2 cut(s) 462, 479
XmiI GTMKAC 1 cut(s) 433
XmnI GAANNNNTTC 1 cut(s) 237
XspI CTAG 2 cut(s) 33, 39
Zsp2I ATGCAT 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.