MD14G1113300.v1.1

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0012957
Physical Location & Seq
Reverse (-)
18265699 .. 18267145
1447 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1113300.v1.1.491

Sequence Viewer

Length: 672 bp
ATGTGGAAATCTTTGTCTAGGACCAGGTCTGTCCATAATCATCAAGAACAACATGACCACCAAGAATACAAGGCTACTGGTAATAGTACTTCCGAGGCTTGCACATCATTAACAGTGTGGAGAAAATCCCTTCTAATTAGCTGTAAAGGGTTCACAGTCATCGATTCAAATGGAGATCTTGTTTATCGAGTGGACAACTACGTCGGACATCCTGAGGAAGTCATTCTCATGGATGGCTCTGGAAAGTCTGTCCTCACAATGCGTCGCCGAAAGAAGCTTAGTCTAATTGATACTTGGTTTGTGCACGACGGGGAAGCTGGCAATTGTTACCCAACAAGATCAACATTTGCAGCATCAAAAAGTATGCCAACGTTTTACGTGAGGAAGAACAAGAACATGCTAAATACCAATCCCAGGAGTATACTTGCTTATGTGTATCGAGAGGCATGTGGCCACAAAAGGCATACATATATGATTGAAGGTTCTTTCACGCACAGATCATGCAAGGTATTAGATGAGTCGAGGAATGTGGTGGCTGAGATCAAGAGAAAGGAAGCAAATAATGGAGGTGTTTCTTATGGATTAGATGTTTTTCATTTAATTGTGCATCCTGGCTTTGATTCTGGACTTGCAATGGCTCTTGTATTAGTATTAGATCAATTGTTTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

224

Amino Acids

25.26

Weight (kDa)

9.18

Isoelectric Point (pI)

49.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 35 - 219 1.4e-31 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012957)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41590
fragaria_vesca FvH4_5g03300
malus_domestica MD06G1092800.v1.1 MD14G1113300.v1.1
prunus_persica Prupe.5G107300_v2.0.a1
pyrus_communis pycom06g08840
rosa_chinensis RchiOBHm_Chr7g0196481
rosa_laevigata RLG00000004010
rosa_multiflora Rmu_sc0024905.1_g000001 Rmu_sc0024906.1_g000001
rosa_roxburghii Rroxscaffold_3G00259260
rosa_rugosa Rorug07G0033800 Rorug07G0033900
rosa_samantha Rh7AG158200 Rh7BG160100 Rh7CG166500 Rh7DG159300
rosa_wichuraiana Rw7G013820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 200
AccI GTMKAC 1 cut(s) 421
AclI AACGTT 1 cut(s) 371
AcoI YGGCCR 1 cut(s) 451
AfaI GTAC 1 cut(s) 88
AfiI CCNNNNNNNGG 1 cut(s) 414
AgsI TTSAA 2 cut(s) 168, 479
AjnI CCWGG 3 cut(s) 23, 413, 610
AluBI AGCT 3 cut(s) 141, 277, 317
AluI AGCT 3 cut(s) 141, 277, 317
Alw21I GWGCWC 1 cut(s) 306
Alw44I GTGCAC 1 cut(s) 302
AoxI GGCC 1 cut(s) 451
ApaLI GTGCAC 1 cut(s) 302
ApeKI GCWGC 1 cut(s) 350
Asp700I GAANNNNTTC 1 cut(s) 222
AspS9I GGNCC 1 cut(s) 21
AvaII GGWCC 1 cut(s) 21
AxyI CCTNAGG 1 cut(s) 213
BaeGI GKGCMC 1 cut(s) 306
BalI TGGCCA 1 cut(s) 453
BarI GAAGNNNNNNTAC 2 cut(s) 73, 105
Bbv12I GWGCWC 1 cut(s) 306
BbvI GCAGC 1 cut(s) 362
BccI CCATC 1 cut(s) 227
BciT130I CCWGG 3 cut(s) 25, 415, 612
BfaI CTAG 1 cut(s) 18
BglII AGATCT 1 cut(s) 175
BisI GCNGC 1 cut(s) 351
BlsI GCNGC 1 cut(s) 352
BmcAI AGTACT 1 cut(s) 88
Bme1390I CCNGG 3 cut(s) 25, 415, 612
Bme18I GGWCC 1 cut(s) 21
BmgT120I GGNCC 1 cut(s) 21
BmrFI CCNGG 3 cut(s) 25, 415, 612
BmsI GCATC 2 cut(s) 362, 616
Bsa29I ATCGAT 1 cut(s) 162
BsaAI YACGTR 1 cut(s) 379
BsaJI CCNNGG 2 cut(s) 93, 413
BsaXI ACNNNNNCTCC 2 cut(s) 165, 195
Bsc4I CCNNNNNNNGG 1 cut(s) 414
Bse1I ACTGG 1 cut(s) 82
Bse21I CCTNAGG 1 cut(s) 213
Bse3DI GCAATG 1 cut(s) 639
BseBI CCWGG 3 cut(s) 25, 415, 612
BseCI ATCGAT 1 cut(s) 162
BseDI CCNNGG 2 cut(s) 93, 413
BseGI GGATG 3 cut(s) 208, 238, 607
BseLI CCNNNNNNNGG 1 cut(s) 414
BseMI GCAATG 1 cut(s) 639
BseMII CTCAG 2 cut(s) 204, 528
BseNI ACTGG 1 cut(s) 82
BseSI GKGCMC 1 cut(s) 306
BseXI GCAGC 1 cut(s) 362
BshFI GGCC 1 cut(s) 453
BshVI ATCGAT 1 cut(s) 162
BsiHKAI GWGCWC 1 cut(s) 306
BslI CCNNNNNNNGG 1 cut(s) 414
BsnI GGCC 1 cut(s) 453
Bsp1286I GDGCHC 1 cut(s) 306
Bsp143I GATC 5 cut(s) 175, 338, 497, 540, 655
BspANI GGCC 1 cut(s) 453
BspCNI CTCAG 2 cut(s) 205, 529
BspDI ATCGAT 1 cut(s) 162
BsrDI GCAATG 1 cut(s) 639
BsrI ACTGG 1 cut(s) 82
BssECI CCNNGG 2 cut(s) 93, 413
BssMI GATC 5 cut(s) 175, 338, 497, 540, 655
BssNAI GTATAC 1 cut(s) 422
Bst1107I GTATAC 1 cut(s) 422
Bst2UI CCWGG 3 cut(s) 25, 415, 612
Bst4CI ACNGT 2 cut(s) 115, 157
BstBAI YACGTR 1 cut(s) 379
BstC8I GCNNGC 2 cut(s) 100, 319
BstDEI CTNAG 4 cut(s) 213, 278, 537, 669
BstF5I GGATG 3 cut(s) 208, 238, 607
BstKTI GATC 5 cut(s) 178, 341, 500, 543, 658
BstMBI GATC 5 cut(s) 175, 338, 497, 540, 655
BstNI CCWGG 3 cut(s) 25, 415, 612
BstNSI RCATGY 2 cut(s) 400, 450
BstSCI CCNGG 3 cut(s) 23, 413, 610
BstSLI GKGCMC 1 cut(s) 306
BstV1I GCAGC 1 cut(s) 362
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
BstZ17I GTATAC 1 cut(s) 422
Bsu15I ATCGAT 1 cut(s) 162
Bsu36I CCTNAGG 1 cut(s) 213
BsuRI GGCC 1 cut(s) 453
BsuTUI ATCGAT 1 cut(s) 162
BtsCI GGATG 3 cut(s) 208, 238, 607
BtsIMutI CAGTG 1 cut(s) 120
Cac8I GCNNGC 2 cut(s) 100, 319
Cfr13I GGNCC 1 cut(s) 21
ClaI ATCGAT 1 cut(s) 162
CseI GACGC 1 cut(s) 251
CsiI ACCWGGT 1 cut(s) 23
Csp6I GTAC 1 cut(s) 87
CviAII CATG 5 cut(s) 53, 229, 397, 447, 501
CviQI GTAC 1 cut(s) 87
DdeI CTNAG 4 cut(s) 213, 278, 537, 669
DpnI GATC 5 cut(s) 177, 340, 499, 542, 657
DpnII GATC 5 cut(s) 175, 338, 497, 540, 655
DrdI GACNNNNNNGTC 1 cut(s) 200
DseDI GACNNNNNNGTC 1 cut(s) 200
EaeI YGGCCR 1 cut(s) 451
Eco47I GGWCC 1 cut(s) 21
Eco81I CCTNAGG 1 cut(s) 213
EcoRII CCWGG 3 cut(s) 23, 413, 610
FaeI CATG 5 cut(s) 56, 232, 400, 450, 504
FatI CATG 5 cut(s) 52, 228, 396, 446, 500
FblI GTMKAC 1 cut(s) 421
Fnu4HI GCNGC 1 cut(s) 351
FokI GGATG 3 cut(s) 195, 245, 594
Fsp4HI GCNGC 1 cut(s) 351
FspBI CTAG 1 cut(s) 18
GluI GCNGC 1 cut(s) 351
HaeIII GGCC 1 cut(s) 453
HgaI GACGC 1 cut(s) 251
Hin1II CATG 5 cut(s) 56, 232, 400, 450, 504
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 3 cut(s) 164, 518, 620
Hpy166II GTNNAC 4 cut(s) 153, 193, 304, 422
Hpy188I TCNGA 2 cut(s) 94, 206
Hpy188III TCNNGA 6 cut(s) 44, 212, 240, 440, 544, 624
Hpy8I GTNNAC 4 cut(s) 153, 193, 304, 422
Hpy99I CGWCG 3 cut(s) 206, 267, 311
HpyAV CCTTC 2 cut(s) 140, 473
HpyCH4III ACNGT 2 cut(s) 115, 157
HpyCH4IV ACGT 3 cut(s) 201, 371, 378
HpyCH4V TGCA 6 cut(s) 102, 304, 350, 504, 607, 632
HpyF3I CTNAG 4 cut(s) 213, 278, 537, 669
HpySE526I ACGT 3 cut(s) 201, 371, 378
Hsp92II CATG 5 cut(s) 56, 232, 400, 450, 504
Kzo9I GATC 5 cut(s) 175, 338, 497, 540, 655
Lsp1109I GCAGC 1 cut(s) 362
LweI GCATC 2 cut(s) 362, 616
MabI ACCWGGT 1 cut(s) 23
MaeI CTAG 1 cut(s) 18
MaeII ACGT 3 cut(s) 201, 371, 378
MaeIII GTNAC 1 cut(s) 326
MalI GATC 5 cut(s) 177, 340, 499, 542, 657
MboI GATC 5 cut(s) 175, 338, 497, 540, 655
MboII GAAGA 1 cut(s) 397
MfeI CAATTG 2 cut(s) 322, 659
MflI RGATCY 1 cut(s) 175
MhlI GDGCHC 1 cut(s) 306
MlsI TGGCCA 1 cut(s) 453
MluCI AATT 5 cut(s) 135, 285, 322, 600, 659
MluNI TGGCCA 1 cut(s) 453
MlyI GAGTC 1 cut(s) 527
MmeI TCCRAC 1 cut(s) 184
MnlI CCTC 7 cut(s) 88, 208, 263, 375, 436, 516, 560
Mox20I TGGCCA 1 cut(s) 453
MroXI GAANNNNTTC 1 cut(s) 222
MscI TGGCCA 1 cut(s) 453
MseI TTAA 2 cut(s) 110, 599
MslI CAYNNNNRTG 1 cut(s) 227
Msp20I TGGCCA 1 cut(s) 453
MspR9I CCNGG 3 cut(s) 25, 415, 612
MunI CAATTG 2 cut(s) 322, 659
MvaI CCWGG 3 cut(s) 25, 415, 612
NdeII GATC 5 cut(s) 175, 338, 497, 540, 655
NlaIII CATG 5 cut(s) 56, 232, 400, 450, 504
NspI RCATGY 2 cut(s) 400, 450
PdmI GAANNNNTTC 1 cut(s) 222
PfeI GAWTC 2 cut(s) 164, 620
PflFI GACNNNGTC 1 cut(s) 25
PkrI GCNGC 1 cut(s) 352
PleI GAGTC 1 cut(s) 526
PpsI GAGTC 1 cut(s) 526
Ppu21I YACGTR 1 cut(s) 379
Psp1406I AACGTT 1 cut(s) 371
Psp6I CCWGG 3 cut(s) 23, 413, 610
PspGI CCWGG 3 cut(s) 23, 413, 610
PspPI GGNCC 1 cut(s) 21
PsuI RGATCY 1 cut(s) 175
PsyI GACNNNGTC 1 cut(s) 25
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
RseI CAYNNNNRTG 1 cut(s) 227
SaqAI TTAA 2 cut(s) 110, 599
SatI GCNGC 1 cut(s) 351
Sau3AI GATC 5 cut(s) 175, 338, 497, 540, 655
Sau96I GGNCC 1 cut(s) 21
ScaI AGTACT 1 cut(s) 88
SchI GAGTC 1 cut(s) 527
ScrFI CCNGG 3 cut(s) 25, 415, 612
SduI GDGCHC 1 cut(s) 306
SexAI ACCWGGT 1 cut(s) 23
SfaNI GCATC 2 cut(s) 362, 616
SinI GGWCC 1 cut(s) 21
SmiMI CAYNNNNRTG 1 cut(s) 227
Sse9I AATT 5 cut(s) 135, 285, 322, 600, 659
SspMI CTAG 1 cut(s) 18
StyD4I CCNGG 3 cut(s) 23, 413, 610
TaaI ACNGT 2 cut(s) 115, 157
TaiI ACGT 3 cut(s) 204, 374, 381
TaqI TCGA 4 cut(s) 162, 187, 439, 521
TasI AATT 5 cut(s) 135, 285, 322, 600, 659
TatI WGTACW 1 cut(s) 86
TfiI GAWTC 2 cut(s) 164, 620
Tru1I TTAA 2 cut(s) 110, 599
Tru9I TTAA 2 cut(s) 110, 599
TscAI CASTG 1 cut(s) 120
TseI GCWGC 1 cut(s) 350
TspDTI ATGAA 1 cut(s) 584
TspRI CASTG 1 cut(s) 120
Tth111I GACNNNGTC 1 cut(s) 25
VneI GTGCAC 1 cut(s) 302
VpaK11BI GGWCC 1 cut(s) 21
XceI RCATGY 2 cut(s) 400, 450
XmiI GTMKAC 1 cut(s) 421
XmnI GAANNNNTTC 1 cut(s) 222
XspI CTAG 1 cut(s) 18
ZrmI AGTACT 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.