RchiOBHm_Chr7g0196481

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0012957
Physical Location & Seq
Forward (+)
14476392 .. 14477304
913 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17575

Sequence Viewer

Length: 696 bp
ATGAAGATTGTTCCTTTCTTCACATCTTTGTCAAGGTCGGTTCATGAAGAACAAGATGATCATGATGACCAGGAATCAAAAGCAGGTATCGATAGCAGTGGCCCTAGTGGGGCTTGCACATCGATATCATTAACAGTATGGAGAAAATCTCTTGTAATTAGCTGTAAAGGGTTCACAGTGATCGATTCCAATGGAGATCTGGTTTATCGGGTCGACAACTATGTCGGTCATCCTCAAGAAGTCACTCTCATGGATGGCTCTGGGAAATCGGTCCTCACAATGCGTCGTAACAAGAAGTTTAGTCTGGTAGAGAGCTGGTTCGTGTACGAAGGAGACGTGGGAGACTTTTTCACAGCAAGAACAACTACAGCAGCAGCACCAAAGAGTTGGCCAGTTTTTTGCGTGAGGAAGAACAAGAACATGTTAAATGCCAATCCCACTACACTTGCCCATGTATATCGTGAAGCATCGGGTAGTCATAAAAAATGTGCTTATGTGATTGAAGGGTCTTACACGCATCGATCATGCAAGGTATTGGAGGAGTTCTCGAGGAATGTGGTGGCTGAGATTAAGAGGAAGGAAGCAAATGTTGGAGGAGTTTCTTATGGGCTGGAGGTTTTCCATTTGGTTGTGCATCCTGGATTTGATCCTGGATTTGCAATGGCGCTTGTGCTATTATTAGATCAAATGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

231

Amino Acids

25.63

Weight (kDa)

7.08

Isoelectric Point (pI)

38.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 43 - 228 9.5e-33 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012957)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41590
fragaria_vesca FvH4_5g03300
malus_domestica MD06G1092800.v1.1 MD14G1113300.v1.1
prunus_persica Prupe.5G107300_v2.0.a1
pyrus_communis pycom06g08840
rosa_chinensis RchiOBHm_Chr7g0196481
rosa_laevigata RLG00000004010
rosa_multiflora Rmu_sc0024905.1_g000001 Rmu_sc0024906.1_g000001
rosa_roxburghii Rroxscaffold_3G00259260
rosa_rugosa Rorug07G0033800 Rorug07G0033900
rosa_samantha Rh7AG158200 Rh7BG160100 Rh7CG166500 Rh7DG159300
rosa_wichuraiana Rw7G013820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 221
Acc36I ACCTGC 1 cut(s) 74
AccI GTMKAC 1 cut(s) 213
AclWI GGATC 1 cut(s) 641
AcoI YGGCCR 1 cut(s) 389
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 1 cut(s) 109
AflIII ACRYGT 1 cut(s) 420
AgsI TTSAA 1 cut(s) 503
AjiI CACGTC 1 cut(s) 337
AjnI CCWGG 3 cut(s) 69, 637, 649
AjuI GAANNNNNNNTTGG 2 cut(s) 573, 605
AluBI AGCT 2 cut(s) 162, 315
AluI AGCT 2 cut(s) 162, 315
Alw26I GTCTC 2 cut(s) 327, 336
AlwI GGATC 1 cut(s) 641
Ama87I CYCGRG 1 cut(s) 547
AoxI GGCC 2 cut(s) 100, 389
ApeKI GCWGC 2 cut(s) 371, 374
AspLEI GCGC 1 cut(s) 667
AspS9I GGNCC 2 cut(s) 101, 271
AvaI CYCGRG 1 cut(s) 547
AvaII GGWCC 1 cut(s) 271
BalI TGGCCA 1 cut(s) 391
BbvI GCAGC 2 cut(s) 383, 386
BccI CCATC 1 cut(s) 248
BciT130I CCWGG 3 cut(s) 71, 639, 651
BclI TGATCA 1 cut(s) 58
BcoDI GTCTC 2 cut(s) 327, 336
BfaI CTAG 1 cut(s) 105
BfmI CTRYAG 1 cut(s) 366
BfoI RGCGCY 1 cut(s) 668
BfuAI ACCTGC 1 cut(s) 74
BglII AGATCT 1 cut(s) 196
BisI GCNGC 2 cut(s) 372, 375
BlsI GCNGC 2 cut(s) 373, 376
Bme1390I CCNGG 3 cut(s) 71, 639, 651
Bme18I GGWCC 1 cut(s) 271
BmeT110I CYCGRG 1 cut(s) 547
BmgBI CACGTC 1 cut(s) 337
BmgT120I GGNCC 2 cut(s) 101, 271
BmrFI CCNGG 3 cut(s) 71, 639, 651
BmsI GCATC 3 cut(s) 476, 526, 643
BplI GAGNNNNNCTC 4 cut(s) 133, 165, 530, 562
BpmI CTGGAG 1 cut(s) 632
BpuEI CTTGAG 1 cut(s) 219
Bsa29I ATCGAT 4 cut(s) 90, 122, 183, 520
BsaXI ACNNNNNCTCC 2 cut(s) 186, 216
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse1I ACTGG 1 cut(s) 392
Bse3DI GCAATG 1 cut(s) 666
BseBI CCWGG 3 cut(s) 71, 639, 651
BseCI ATCGAT 4 cut(s) 90, 122, 183, 520
BseGI GGATG 3 cut(s) 229, 259, 634
BseLI CCNNNNNNNGG 1 cut(s) 109
BseMI GCAATG 1 cut(s) 666
BseMII CTCAG 1 cut(s) 555
BseNI ACTGG 1 cut(s) 392
BseRI GAGGAG 2 cut(s) 554, 609
BseXI GCAGC 2 cut(s) 383, 386
BshFI GGCC 2 cut(s) 102, 391
BshVI ATCGAT 4 cut(s) 90, 122, 183, 520
BsiHKCI CYCGRG 1 cut(s) 547
BslI CCNNNNNNNGG 1 cut(s) 109
BsmAI GTCTC 2 cut(s) 327, 336
BsmBI CGTCTC 1 cut(s) 327
BsnI GGCC 2 cut(s) 102, 391
BsoBI CYCGRG 1 cut(s) 547
Bsp143I GATC 6 cut(s) 58, 180, 196, 521, 646, 682
BspANI GGCC 2 cut(s) 102, 391
BspCNI CTCAG 1 cut(s) 556
BspDI ATCGAT 4 cut(s) 90, 122, 183, 520
BspHI TCATGA 2 cut(s) 43, 61
BspMI ACCTGC 1 cut(s) 74
BspPI GGATC 1 cut(s) 641
BsrDI GCAATG 1 cut(s) 666
BsrI ACTGG 1 cut(s) 392
BssMI GATC 6 cut(s) 58, 180, 196, 521, 646, 682
Bst2UI CCWGG 3 cut(s) 71, 639, 651
Bst4CI ACNGT 2 cut(s) 136, 178
BstC8I GCNNGC 1 cut(s) 115
BstDEI CTNAG 1 cut(s) 564
BstF5I GGATG 3 cut(s) 229, 259, 634
BstH2I RGCGCY 1 cut(s) 668
BstHHI GCGC 1 cut(s) 667
BstKTI GATC 6 cut(s) 61, 183, 199, 524, 649, 685
BstMAI GTCTC 2 cut(s) 327, 336
BstMBI GATC 6 cut(s) 58, 180, 196, 521, 646, 682
BstNI CCWGG 3 cut(s) 71, 639, 651
BstNSI RCATGY 1 cut(s) 424
BstSCI CCNGG 3 cut(s) 69, 637, 649
BstSFI CTRYAG 1 cut(s) 366
BstV1I GCAGC 2 cut(s) 383, 386
BstX2I RGATCY 1 cut(s) 196
BstXI CCANNNNNNTGG 1 cut(s) 387
BstYI RGATCY 1 cut(s) 196
Bsu15I ATCGAT 4 cut(s) 90, 122, 183, 520
BsuRI GGCC 2 cut(s) 102, 391
BsuTUI ATCGAT 4 cut(s) 90, 122, 183, 520
BtrI CACGTC 1 cut(s) 337
BtsCI GGATG 3 cut(s) 229, 259, 634
BtsI GCAGTG 1 cut(s) 103
BtsIMutI CAGTG 2 cut(s) 103, 183
BveI ACCTGC 1 cut(s) 74
Cac8I GCNNGC 1 cut(s) 115
CciI TCATGA 2 cut(s) 43, 61
CfoI GCGC 1 cut(s) 667
Cfr13I GGNCC 2 cut(s) 101, 271
ClaI ATCGAT 4 cut(s) 90, 122, 183, 520
CseI GACGC 1 cut(s) 272
Csp6I GTAC 1 cut(s) 325
CspCI CAANNNNNGTGG 2 cut(s) 427, 462
CviAII CATG 6 cut(s) 44, 62, 250, 421, 452, 525
CviJI RGCY 8 cut(s) 102, 113, 162, 258, 315, 391, 563, 610
CviKI_1 RGCY 8 cut(s) 102, 113, 162, 258, 315, 391, 563, 610
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 1 cut(s) 564
DpnI GATC 6 cut(s) 60, 182, 198, 523, 648, 684
DpnII GATC 6 cut(s) 58, 180, 196, 521, 646, 682
DrdI GACNNNNNNGTC 1 cut(s) 221
DseDI GACNNNNNNGTC 1 cut(s) 221
EaeI YGGCCR 1 cut(s) 389
Eco32I GATATC 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 271
Eco88I CYCGRG 1 cut(s) 547
EcoRII CCWGG 3 cut(s) 69, 637, 649
EcoRV GATATC 1 cut(s) 126
Esp3I CGTCTC 1 cut(s) 327
FaeI CATG 6 cut(s) 47, 65, 253, 424, 455, 528
FatI CATG 6 cut(s) 43, 61, 249, 420, 451, 524
FbaI TGATCA 1 cut(s) 58
FblI GTMKAC 1 cut(s) 213
Fnu4HI GCNGC 2 cut(s) 372, 375
FokI GGATG 3 cut(s) 216, 266, 621
Fsp4HI GCNGC 2 cut(s) 372, 375
FspBI CTAG 1 cut(s) 105
GlaI GCGC 1 cut(s) 666
GluI GCNGC 2 cut(s) 372, 375
GsuI CTGGAG 1 cut(s) 632
HaeII RGCGCY 1 cut(s) 668
HaeIII GGCC 2 cut(s) 102, 391
HgaI GACGC 1 cut(s) 272
HhaI GCGC 1 cut(s) 667
Hin1II CATG 6 cut(s) 47, 65, 253, 424, 455, 528
Hin6I GCGC 1 cut(s) 665
HinP1I GCGC 1 cut(s) 665
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HinfI GANTC 2 cut(s) 74, 185
Hpy166II GTNNAC 3 cut(s) 174, 214, 325
Hpy188III TCNNGA 5 cut(s) 44, 62, 236, 461, 547
Hpy8I GTNNAC 3 cut(s) 174, 214, 325
Hpy99I CGWCG 1 cut(s) 288
HpyAV CCTTC 3 cut(s) 323, 497, 571
HpyCH4III ACNGT 2 cut(s) 136, 178
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 4 cut(s) 117, 528, 634, 659
HpyF3I CTNAG 1 cut(s) 564
HpySE526I ACGT 1 cut(s) 336
Hsp92II CATG 6 cut(s) 47, 65, 253, 424, 455, 528
HspAI GCGC 1 cut(s) 665
Ksp22I TGATCA 1 cut(s) 58
Kzo9I GATC 6 cut(s) 58, 180, 196, 521, 646, 682
Lsp1109I GCAGC 2 cut(s) 383, 386
LweI GCATC 3 cut(s) 476, 526, 643
MaeI CTAG 1 cut(s) 105
MaeII ACGT 1 cut(s) 336
MaeIII GTNAC 2 cut(s) 241, 287
MalI GATC 6 cut(s) 60, 182, 198, 523, 648, 684
MboI GATC 6 cut(s) 58, 180, 196, 521, 646, 682
MboII GAAGA 4 cut(s) 10, 16, 59, 421
MflI RGATCY 1 cut(s) 196
MlsI TGGCCA 1 cut(s) 391
MluCI AATT 1 cut(s) 156
MluNI TGGCCA 1 cut(s) 391
MmeI TCCRAC 1 cut(s) 571
MnlI CCTC 8 cut(s) 243, 284, 399, 532, 543, 567, 587, 607
Mox20I TGGCCA 1 cut(s) 391
MscI TGGCCA 1 cut(s) 391
MseI TTAA 4 cut(s) 131, 425, 570, 694
MslI CAYNNNNRTG 1 cut(s) 248
Msp20I TGGCCA 1 cut(s) 391
MspR9I CCNGG 3 cut(s) 71, 639, 651
MvaI CCWGG 3 cut(s) 71, 639, 651
NdeII GATC 6 cut(s) 58, 180, 196, 521, 646, 682
NlaIII CATG 6 cut(s) 47, 65, 253, 424, 455, 528
NmuCI GTSAC 1 cut(s) 241
NspI RCATGY 1 cut(s) 424
PaeR7I CTCGAG 1 cut(s) 547
PagI TCATGA 2 cut(s) 43, 61
PciI ACATGT 1 cut(s) 420
PcsI WCGNNNNNNNCGW 1 cut(s) 333
PfeI GAWTC 2 cut(s) 74, 185
PfoI TCCNGGA 2 cut(s) 637, 649
PkrI GCNGC 2 cut(s) 373, 376
PscI ACATGT 1 cut(s) 420
Psp6I CCWGG 3 cut(s) 69, 637, 649
PspGI CCWGG 3 cut(s) 69, 637, 649
PspPI GGNCC 2 cut(s) 101, 271
PsuI RGATCY 1 cut(s) 196
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
RseI CAYNNNNRTG 1 cut(s) 248
SalI GTCGAC 1 cut(s) 212
SaqAI TTAA 4 cut(s) 131, 425, 570, 694
SatI GCNGC 2 cut(s) 372, 375
Sau3AI GATC 6 cut(s) 58, 180, 196, 521, 646, 682
Sau96I GGNCC 2 cut(s) 101, 271
ScrFI CCNGG 3 cut(s) 71, 639, 651
SetI ASST 7 cut(s) 38, 88, 164, 317, 339, 534, 618
SfaNI GCATC 3 cut(s) 476, 526, 643
SfcI CTRYAG 1 cut(s) 366
Sfr274I CTCGAG 1 cut(s) 547
SinI GGWCC 1 cut(s) 271
SlaI CTCGAG 1 cut(s) 547
SmiMI CAYNNNNRTG 1 cut(s) 248
SmlI CTYRAG 2 cut(s) 234, 547
SmoI CTYRAG 2 cut(s) 234, 547
Sse9I AATT 1 cut(s) 156
SspMI CTAG 1 cut(s) 105
StyD4I CCNGG 3 cut(s) 69, 637, 649
TaaI ACNGT 2 cut(s) 136, 178
TaiI ACGT 1 cut(s) 339
TaqI TCGA 6 cut(s) 90, 122, 183, 213, 520, 548
TaqII GACCGA 2 cut(s) 215, 259
TasI AATT 1 cut(s) 156
TfiI GAWTC 2 cut(s) 74, 185
Tru1I TTAA 4 cut(s) 131, 425, 570, 694
Tru9I TTAA 4 cut(s) 131, 425, 570, 694
TscAI CASTG 2 cut(s) 103, 183
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 2 cut(s) 371, 374
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 3 cut(s) 17, 32, 60
TspRI CASTG 2 cut(s) 103, 183
VpaK11BI GGWCC 1 cut(s) 271
XceI RCATGY 1 cut(s) 424
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
XhoI CTCGAG 1 cut(s) 547
XmiI GTMKAC 1 cut(s) 213
XspI CTAG 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.