AT5G42370

PhoD-like phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013277
Physical Location & Seq
Reverse (-)
16938981 .. 16941754
2774 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G42370.1

Sequence Viewer

Length: 1344 bp
ATGAACCAAATCTCTTTCTGGTGCCTTTCTTTACTCCTTACGGTGGTGATTGCTGCAGAAGAGACTCCTATCACTCGTATAGCCTTCGGATCATGCGCTAATCAAAGTGCTCCACAGCCGATATGGGATGCGATAAACAAGTTTGATCCGCAACTGTTTATTTGGTTGGGTGATAACATCTACGGAGATATAAGAAGACCACTTACAGTCATTGGGAAAGAGAGAACTTTTGGGCCATGGAGGAATTCACCGAGGTTTGTACCTTCTTCAGAGGAAGAAATGAAACTAAGATACGCTAAAGCCAAAGCTAATCCTGGATATTCTCGTATTCAGAGAAAAGCTAAGGTTATTGGTACATGGGATGATCATGATTACGGATTGAATGACGCTGGAAAAGAGTTTGATCGTAAAGTCATTAACCAAAAACTTATGCTTGATTTCTTGAATGAGCCTCTTGATAGTCCTAGGAGAAAGCAAGCTGGTGTTTATGCTTCTTATACTTATGGTCCGCCTAATCGGAAAGTTAAGGTTATAGTTTTAGATACTAGATATCATAGAGACCCTTTAAGAAGTGACGGGAGCATATTGGGTGATACGCAGTGGGACTGGCTCGAAAATGAATTGAGCGGTCCCCGAAGCGAAATCACTATCATAGGATCCTCTGTTCAGGTGATATCAAATCTTTCTGCTACCACTGGACCTCTCTTTTATATGGAATCATGGGGTCGTTTTCCAAAGGAAAGGAAACGTCTTTTTAAACTGATAGCAGATACTAAGAGAGATGGAGTTATATTCATCAGTGGAGATGTACATTTTGGAGAAATCACGAGATATGATTGTTCTGTTGGGTACCCATTATATGATGTCACCTCCAGTGGTCTAGTACAATCTGTTGAGAAAGTTGTCCCTCGTCCCTTGCGTTCCATAGTTAGGCTTCTTTTTTGGTATACTCCAAGCACGATGAGAGTTATCAATGATAACTGCAAATTCAAATCTTGCACATACGGACAACAAAATTTTGGAGCAATATCGATAGATTGGAATGCAAATCCGGTTACCATAAAGCTCGAGATCAGAGATGTTAACGGAGACACTGTACTAGGCACGAATGTTTCATTATCTGAACTCCAACCAGGAGGCTCGAATTCTTTAAAAGATACAACAACTAAGGGAAAGTCTCAACGATATTGCACACTCGAAATTGAATTACCAGGAACGACCAGATACCGATTGGCAGTTCTCATCTACTTCACCATTGCTGTCTTGGCAATGGCGATATTAGGACTTATCATTGGAGCTGTATTGGCCATAACAGCATGCGTTTATAAATGCAAGGTCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00790 ko01100 ko02020 map00790 map01100 map02020
Pfam Domains
Protein Families
PhoD

Protein Analysis

447

Amino Acids

50.34

Weight (kDa)

9.07

Isoelectric Point (pI)

37.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PhoD PF09423 28 - 281 4.2e-25 PhoD-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013277)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42370 AT5G42370
fragaria_vesca FvH4_5g26760 FvH4_5g26760 FvH4_5g26760 FvH4_5g26760
prunus_persica Prupe.5G000900_v2.0.a1
pyrus_communis pycom16g26350
rosa_chinensis RchiOBHm_Chr7g0217631
rosa_laevigata RLG00000002455
rosa_multiflora Rmu_sc0015965.1_g000001
rosa_roxburghii Rroxscaffold_3G00241790
rosa_rugosa Rorug07G0170500
rosa_samantha Rh7AG310600 Rh7BG301900 Rh7CG329600 Rh7DG310700
rosa_wichuraiana Rw7G026370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1326
Acc65I GGTACC 1 cut(s) 849
AccB1I GGYRCC 2 cut(s) 21, 849
AccBSI CCGCTC 1 cut(s) 627
AccI GTMKAC 1 cut(s) 947
AciI CCGC 3 cut(s) 149, 509, 627
AclWI GGATC 4 cut(s) 97, 140, 651, 664
AcoI YGGCCR 1 cut(s) 1305
AcsI RAATTY 4 cut(s) 244, 986, 1015, 1144
AcuI CTGAAG 1 cut(s) 252
AfaI GTAC 6 cut(s) 261, 355, 810, 851, 885, 1098
AfiI CCNNNNNNNGG 2 cut(s) 43, 930
AgsI TTSAA 4 cut(s) 382, 445, 991, 1205
AjnI CCWGG 3 cut(s) 313, 1132, 1210
AloI GAACNNNNNNTCC 2 cut(s) 648, 680
AluBI AGCT 5 cut(s) 308, 341, 479, 1066, 1298
AluI AGCT 5 cut(s) 308, 341, 479, 1066, 1298
Alw21I GWGCWC 1 cut(s) 112
Alw26I GTCTC 4 cut(s) 56, 552, 1083, 1182
AlwI GGATC 4 cut(s) 97, 140, 651, 664
Ama87I CYCGRG 1 cut(s) 1067
AoxI GGCC 2 cut(s) 233, 1305
ApeKI GCWGC 1 cut(s) 53
ApoI RAATTY 4 cut(s) 244, 986, 1015, 1144
Asp718I GGTACC 1 cut(s) 849
AspA2I CCTAGG 1 cut(s) 464
AspLEI GCGC 1 cut(s) 98
AspS9I GGNCC 4 cut(s) 233, 506, 629, 698
AsuHPI GGTGA 7 cut(s) 58, 182, 240, 602, 682, 859, 1243
AvaI CYCGRG 1 cut(s) 1067
AvaII GGWCC 3 cut(s) 506, 629, 698
AvrII CCTAGG 1 cut(s) 464
BalI TGGCCA 1 cut(s) 1307
BamHI GGATCC 1 cut(s) 656
BanI GGYRCC 2 cut(s) 21, 849
BarI GAAGNNNNNNTAC 2 cut(s) 187, 219
BauI CACGAG 1 cut(s) 826
BbsI GAAGAC 1 cut(s) 202
Bbv12I GWGCWC 1 cut(s) 112
BbvI GCAGC 1 cut(s) 40
BccI CCATC 1 cut(s) 776
BciT130I CCWGG 3 cut(s) 315, 1134, 1212
BclI TGATCA 1 cut(s) 364
BcoDI GTCTC 4 cut(s) 56, 552, 1083, 1182
BfaI CTAG 4 cut(s) 465, 546, 881, 1100
BfmI CTRYAG 1 cut(s) 54
BisI GCNGC 1 cut(s) 54
BlnI CCTAGG 1 cut(s) 464
BlsI GCNGC 1 cut(s) 55
Bme1390I CCNGG 3 cut(s) 315, 1134, 1212
Bme18I GGWCC 3 cut(s) 506, 629, 698
BmeT110I CYCGRG 1 cut(s) 1067
BmgT120I GGNCC 4 cut(s) 233, 506, 629, 698
BmiI GGNNCC 4 cut(s) 23, 631, 658, 851
BmrFI CCNGG 3 cut(s) 315, 1134, 1212
BmsI GCATC 1 cut(s) 118
BpiI GAAGAC 1 cut(s) 202
BpmI CTGGAG 1 cut(s) 856
Bpu10I CCTNAGC 1 cut(s) 342
Bsa29I ATCGAT 1 cut(s) 1031
BsaI GGTCTC 1 cut(s) 552
BsaJI CCNNGG 3 cut(s) 236, 251, 464
BsaWI WCCGGW 1 cut(s) 1051
BsaXI ACNNNNNCTCC 2 cut(s) 1080, 1110
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 930
Bse1I ACTGG 3 cut(s) 611, 700, 873
Bse3DI GCAATG 2 cut(s) 1254, 1275
BseBI CCWGG 3 cut(s) 315, 1134, 1212
BseCI ATCGAT 1 cut(s) 1031
BseDI CCNNGG 3 cut(s) 236, 251, 464
BseGI GGATG 2 cut(s) 133, 367
BseLI CCNNNNNNNGG 2 cut(s) 43, 930
BseMI GCAATG 2 cut(s) 1254, 1275
BseNI ACTGG 3 cut(s) 611, 700, 873
BseXI GCAGC 1 cut(s) 40
BshFI GGCC 2 cut(s) 235, 1307
BshNI GGYRCC 2 cut(s) 21, 849
BshVI ATCGAT 1 cut(s) 1031
BsiHKAI GWGCWC 1 cut(s) 112
BsiHKCI CYCGRG 1 cut(s) 1067
BsiSI CCGG 1 cut(s) 1052
BslFI GGGAC 4 cut(s) 615, 617, 890, 897
BslI CCNNNNNNNGG 2 cut(s) 43, 930
BsmAI GTCTC 4 cut(s) 56, 552, 1083, 1182
BsmFI GGGAC 4 cut(s) 615, 617, 890, 897
BsmI GAATGC 1 cut(s) 1048
BsnI GGCC 2 cut(s) 235, 1307
Bso31I GGTCTC 1 cut(s) 552
BsoBI CYCGRG 1 cut(s) 1067
Bsp1286I GDGCHC 1 cut(s) 112
Bsp1407I TGTACA 1 cut(s) 808
Bsp143I GATC 6 cut(s) 89, 145, 364, 403, 656, 1071
Bsp19I CCATGG 1 cut(s) 236
BspACI CCGC 3 cut(s) 149, 509, 627
BspANI GGCC 2 cut(s) 235, 1307
BspDI ATCGAT 1 cut(s) 1031
BspHI TCATGA 1 cut(s) 367
BspLI GGNNCC 4 cut(s) 23, 631, 658, 851
BspMAI CTGCAG 1 cut(s) 58
BspPI GGATC 4 cut(s) 97, 140, 651, 664
BspT107I GGYRCC 2 cut(s) 21, 849
BspTNI GGTCTC 1 cut(s) 552
BsrBI CCGCTC 1 cut(s) 627
BsrDI GCAATG 2 cut(s) 1254, 1275
BsrGI TGTACA 1 cut(s) 808
BsrI ACTGG 3 cut(s) 611, 700, 873
BssECI CCNNGG 3 cut(s) 236, 251, 464
BssMI GATC 6 cut(s) 89, 145, 364, 403, 656, 1071
BssNAI GTATAC 1 cut(s) 948
BssSI CACGAG 1 cut(s) 826
BssT1I CCWWGG 2 cut(s) 236, 464
Bst1107I GTATAC 1 cut(s) 948
Bst2BI CACGAG 1 cut(s) 826
Bst2UI CCWGG 3 cut(s) 315, 1134, 1212
Bst4CI ACNGT 4 cut(s) 43, 156, 208, 1096
Bst6I CTCTTC 1 cut(s) 54
BstAUI TGTACA 1 cut(s) 808
BstC8I GCNNGC 2 cut(s) 477, 1318
BstDEI CTNAG 4 cut(s) 287, 342, 774, 1167
BstDSI CCRYGG 1 cut(s) 236
BstEII GGTNACC 1 cut(s) 1054
BstF5I GGATG 2 cut(s) 133, 367
BstHHI GCGC 1 cut(s) 98
BstKTI GATC 6 cut(s) 92, 148, 367, 406, 659, 1074
BstMAI GTCTC 4 cut(s) 56, 552, 1083, 1182
BstMBI GATC 6 cut(s) 89, 145, 364, 403, 656, 1071
BstMWI GCNNNNNNNGC 3 cut(s) 1265, 1304, 1313
BstNI CCWGG 3 cut(s) 315, 1134, 1212
BstNSI RCATGY 1 cut(s) 1320
BstPI GGTNACC 1 cut(s) 1054
BstSCI CCNGG 3 cut(s) 313, 1132, 1210
BstSFI CTRYAG 1 cut(s) 54
BstV1I GCAGC 1 cut(s) 40
BstV2I GAAGAC 1 cut(s) 202
BstX2I RGATCY 1 cut(s) 656
BstYI RGATCY 1 cut(s) 656
BstZ17I GTATAC 1 cut(s) 948
Bsu15I ATCGAT 1 cut(s) 1031
BsuRI GGCC 2 cut(s) 235, 1307
BsuTUI ATCGAT 1 cut(s) 1031
BtgI CCRYGG 1 cut(s) 236
BtsCI GGATG 2 cut(s) 133, 367
BtsI GCAGTG 1 cut(s) 605
BtsIMutI CAGTG 5 cut(s) 605, 693, 805, 880, 1092
Cac8I GCNNGC 2 cut(s) 477, 1318
CciI TCATGA 1 cut(s) 367
CfoI GCGC 1 cut(s) 98
Cfr13I GGNCC 4 cut(s) 233, 506, 629, 698
ClaI ATCGAT 1 cut(s) 1031
CseI GACGC 1 cut(s) 395
Csp6I GTAC 6 cut(s) 260, 354, 809, 850, 884, 1097
CviAII CATG 6 cut(s) 93, 237, 357, 368, 720, 1317
CviQI GTAC 6 cut(s) 260, 354, 809, 850, 884, 1097
DdeI CTNAG 4 cut(s) 287, 342, 774, 1167
DpnI GATC 6 cut(s) 91, 147, 366, 405, 658, 1073
DpnII GATC 6 cut(s) 89, 145, 364, 403, 656, 1071
DraI TTTAAA 2 cut(s) 757, 1152
EaeI YGGCCR 1 cut(s) 1305
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
EciI GGCGGA 1 cut(s) 498
Eco130I CCWWGG 2 cut(s) 236, 464
Eco31I GGTCTC 1 cut(s) 552
Eco32I GATATC 2 cut(s) 551, 675
Eco47I GGWCC 3 cut(s) 506, 629, 698
Eco57I CTGAAG 1 cut(s) 252
Eco88I CYCGRG 1 cut(s) 1067
Eco91I GGTNACC 1 cut(s) 1054
EcoO65I GGTNACC 1 cut(s) 1054
EcoRI GAATTC 2 cut(s) 244, 1144
EcoRII CCWGG 3 cut(s) 313, 1132, 1210
EcoRV GATATC 2 cut(s) 551, 675
EcoT14I CCWWGG 2 cut(s) 236, 464
ErhI CCWWGG 2 cut(s) 236, 464
FaeI CATG 6 cut(s) 96, 240, 360, 371, 723, 1320
FaqI GGGAC 4 cut(s) 615, 617, 890, 897
FatI CATG 6 cut(s) 92, 236, 356, 367, 719, 1316
FbaI TGATCA 1 cut(s) 364
FblI GTMKAC 1 cut(s) 947
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 2 cut(s) 140, 374
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 4 cut(s) 465, 546, 881, 1100
GlaI GCGC 1 cut(s) 97
GluI GCNGC 1 cut(s) 54
GsuI CTGGAG 1 cut(s) 856
HaeIII GGCC 2 cut(s) 235, 1307
HapII CCGG 1 cut(s) 1052
HgaI GACGC 1 cut(s) 395
HhaI GCGC 1 cut(s) 98
Hin1II CATG 6 cut(s) 96, 240, 360, 371, 723, 1320
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HincII GTYRAC 1 cut(s) 1084
HindII GTYRAC 1 cut(s) 1084
HinfI GANTC 2 cut(s) 64, 716
HpaI GTTAAC 1 cut(s) 1084
HpaII CCGG 1 cut(s) 1052
HphI GGTGA 7 cut(s) 58, 182, 240, 602, 682, 859, 1243
Hpy166II GTNNAC 2 cut(s) 948, 1084
Hpy188I TCNGA 6 cut(s) 89, 271, 333, 519, 1076, 1123
Hpy188III TCNNGA 5 cut(s) 368, 442, 455, 826, 1069
Hpy8I GTNNAC 2 cut(s) 948, 1084
HpyAV CCTTC 2 cut(s) 94, 273
HpyCH4III ACNGT 4 cut(s) 43, 156, 208, 1096
HpyCH4IV ACGT 1 cut(s) 748
HpyCH4V TGCA 6 cut(s) 56, 984, 999, 1046, 1191, 1332
HpyF10VI GCNNNNNNNGC 3 cut(s) 1265, 1304, 1313
HpyF3I CTNAG 4 cut(s) 287, 342, 774, 1167
HpySE526I ACGT 1 cut(s) 748
Hsp92II CATG 6 cut(s) 96, 240, 360, 371, 723, 1320
HspAI GCGC 1 cut(s) 96
KpnI GGTACC 1 cut(s) 853
Ksp22I TGATCA 1 cut(s) 364
KspAI GTTAAC 1 cut(s) 1084
Kzo9I GATC 6 cut(s) 89, 145, 364, 403, 656, 1071
LmnI GCTCC 4 cut(s) 115, 579, 1022, 1295
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 1 cut(s) 118
MaeI CTAG 4 cut(s) 465, 546, 881, 1100
MaeII ACGT 1 cut(s) 748
MaeIII GTNAC 3 cut(s) 572, 865, 1054
MalI GATC 6 cut(s) 91, 147, 366, 405, 658, 1073
MbiI CCGCTC 1 cut(s) 627
MboI GATC 6 cut(s) 89, 145, 364, 403, 656, 1071
MboII GAAGA 4 cut(s) 71, 207, 258, 287
MflI RGATCY 1 cut(s) 656
MhlI GDGCHC 1 cut(s) 112
MlsI TGGCCA 1 cut(s) 1307
MluCI AATT 7 cut(s) 244, 620, 986, 1015, 1144, 1200, 1205
MluNI TGGCCA 1 cut(s) 1307
MlyI GAGTC 1 cut(s) 58
MmeI TCCRAC 1 cut(s) 1153
MnlI CCTC 9 cut(s) 234, 246, 265, 462, 670, 711, 880, 918, 1130
Mox20I TGGCCA 1 cut(s) 1307
MscI TGGCCA 1 cut(s) 1307
MseI TTAA 6 cut(s) 417, 525, 566, 756, 1083, 1151
Msp20I TGGCCA 1 cut(s) 1307
MspI CCGG 1 cut(s) 1052
MspR9I CCNGG 3 cut(s) 315, 1134, 1212
Mva1269I GAATGC 1 cut(s) 1048
MvaI CCWGG 3 cut(s) 315, 1134, 1212
MwoI GCNNNNNNNGC 3 cut(s) 1265, 1304, 1313
NcoI CCATGG 1 cut(s) 236
NdeII GATC 6 cut(s) 89, 145, 364, 403, 656, 1071
NlaIII CATG 6 cut(s) 96, 240, 360, 371, 723, 1320
NlaIV GGNNCC 4 cut(s) 23, 631, 658, 851
NmuCI GTSAC 2 cut(s) 572, 865
NspI RCATGY 1 cut(s) 1320
PaeI GCATGC 1 cut(s) 1320
PaeR7I CTCGAG 1 cut(s) 1067
PagI TCATGA 1 cut(s) 367
PcsI WCGNNNNNNNCGW 1 cut(s) 916
PctI GAATGC 1 cut(s) 1048
PfeI GAWTC 1 cut(s) 716
PfoI TCCNGGA 1 cut(s) 313
PkrI GCNGC 1 cut(s) 55
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
PsiI TTATAA 1 cut(s) 1326
Psp6I CCWGG 3 cut(s) 313, 1132, 1210
PspEI GGTNACC 1 cut(s) 1054
PspGI CCWGG 3 cut(s) 313, 1132, 1210
PspN4I GGNNCC 4 cut(s) 23, 631, 658, 851
PspPI GGNCC 4 cut(s) 233, 506, 629, 698
PstI CTGCAG 1 cut(s) 58
PsuI RGATCY 1 cut(s) 656
RsaI GTAC 6 cut(s) 261, 355, 810, 851, 885, 1098
RsaNI GTAC 6 cut(s) 260, 354, 809, 850, 884, 1097
SaqAI TTAA 6 cut(s) 417, 525, 566, 756, 1083, 1151
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 6 cut(s) 89, 145, 364, 403, 656, 1071
Sau96I GGNCC 4 cut(s) 233, 506, 629, 698
SchI GAGTC 1 cut(s) 58
ScrFI CCNGG 3 cut(s) 315, 1134, 1212
SduI GDGCHC 1 cut(s) 112
SfaNI GCATC 1 cut(s) 118
SfcI CTRYAG 1 cut(s) 54
Sfr274I CTCGAG 1 cut(s) 1067
SinI GGWCC 3 cut(s) 506, 629, 698
SlaI CTCGAG 1 cut(s) 1067
SmlI CTYRAG 1 cut(s) 1067
SmoI CTYRAG 1 cut(s) 1067
SphI GCATGC 1 cut(s) 1320
Sse9I AATT 7 cut(s) 244, 620, 986, 1015, 1144, 1200, 1205
SsiI CCGC 3 cut(s) 149, 509, 627
SspMI CTAG 4 cut(s) 465, 546, 881, 1100
StyD4I CCNGG 3 cut(s) 313, 1132, 1210
StyI CCWWGG 2 cut(s) 236, 464
TaaI ACNGT 4 cut(s) 43, 156, 208, 1096
TaiI ACGT 1 cut(s) 751
TaqI TCGA 6 cut(s) 612, 1031, 1068, 1142, 1197, 1338
TasI AATT 7 cut(s) 244, 620, 986, 1015, 1144, 1200, 1205
TatI WGTACW 3 cut(s) 808, 883, 1096
TfiI GAWTC 1 cut(s) 716
Tru1I TTAA 6 cut(s) 417, 525, 566, 756, 1083, 1151
Tru9I TTAA 6 cut(s) 417, 525, 566, 756, 1083, 1151
TscAI CASTG 5 cut(s) 605, 700, 805, 880, 1099
TseFI GTSAC 2 cut(s) 572, 865
TseI GCWGC 1 cut(s) 53
Tsp45I GTSAC 2 cut(s) 572, 865
TspDTI ATGAA 5 cut(s) 17, 296, 633, 784, 1104
TspGWI ACGGA 4 cut(s) 198, 390, 1020, 1101
TspRI CASTG 5 cut(s) 605, 700, 805, 880, 1099
VpaK11BI GGWCC 3 cut(s) 506, 629, 698
XapI RAATTY 4 cut(s) 244, 986, 1015, 1144
XceI RCATGY 1 cut(s) 1320
XcmI CCANNNNNNNNNTGG 3 cut(s) 120, 1228, 1261
XhoI CTCGAG 1 cut(s) 1067
XmaJI CCTAGG 1 cut(s) 464
XmiI GTMKAC 1 cut(s) 947
XspI CTAG 4 cut(s) 465, 546, 881, 1100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.