FvH4_5g26760

PhoD-like phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0013277
Physical Location & Seq
Reverse (-)
18163101 .. 18166901
3801 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g26760.t1

Sequence Viewer

Length: 1218 bp
ATGGGTTTGGGATTGAAGTGGTGGTGCTGGTGGTTGACGGTTACGGCGGTTGGAGTAGGAGTGGTGGTTAGGGGTGCCCCTTCTGAGACTAAGAACAACAATCTGGTTAGTCGTATCGGCTTTGGATCATGTGCCAACCAATCTGCTCCTCAGGAAATGAAGTCCAAGTATGAGAAAGCCAAATCTAATCCTGGTTACTCTCGTCTTCGACAGAAGACTAAGGTCATAGGCACATGGGATGACCATGATTATGGATTAAACGATGCAGGAAAAGAATTTGCTGGGAAAATAACCAATCAAAGGCTCATGCTAGATTTCTTAGACGAGCCTCATGATAGTCCACGGCGCAAACAAGCTGGTGTCTATGCATCTTATACATTTGGTCCCACAGGTAGACAAATCAAGGTTATATTATTAGATACTAGATACCACCGAGATCCTTTACGTAGTGATGGAAGTATTTTGGGGAGTTCACAATGGACTTGGTTAGAGCAAGAGCTGCATGGTTCTCCAACAGCGGTTACTATTATTGGGTCGTCCATACAGGTTATCTCAAATCTCTCAGCAACAACTGGGCCTTTTTTTTACATGGAATCTTGGGGACGTTTTCCAAAAGAGAGAGATCGATTATTTAAACTGCTGGCAGATAGTAAGAGGGGTGGAGTGTTTTTCATTAGTGGAGATGTTCATTTTGGAGAAATTACAAGATATGATTGTGCCACTGGATATCCATTGTATGATGTCACTGCAAGCGGAATCACCCAAGCAGTTGAAAAGGTAGTCCCAACGCCACTGCATTTCTTTGTGAGATTCCTGGCATGGTTAACTCCTGCCACCTTGAGAGTAATGGATGGAAATTGCAGACGCAAATCATGTACATATGGTATGCCTAATTTTGGAGCAATTGAGATAGACTGGGATGCAAATCCCATGACATTGAAACTTCAAGTGAGGGATACGGATGGCAATCCTGTGGTAGGTGTAAATGCACCGTTACCGGAATTGCAGGCGAGAAATTTCAACTATGTGACTAGCAGTAAAATAGGAAAGCACCAAAAGCACTGCTATCTTGAAATCAATCAACCAGGCATTGTCAGATATCGCTTGGCTATTTTAGCTTATTGTGCTCTTGCTGTATTGATCCTTTCTATGATGGGTGTGATTTGGCTTTGTACATTATGTTGCTGCAGATGTCCTCTCAAGAAAAAGCGGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00790 ko01100 ko02020 map00790 map01100 map02020
Pfam Domains
Protein Families
PhoD

Protein Analysis

406

Amino Acids

45.41

Weight (kDa)

9.27

Isoelectric Point (pI)

35.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PhoD PF09423 53 - 246 8.3e-16 PhoD-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013277)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42370 AT5G42370
fragaria_vesca FvH4_5g26760 FvH4_5g26760 FvH4_5g26760 FvH4_5g26760
prunus_persica Prupe.5G000900_v2.0.a1
pyrus_communis pycom16g26350
rosa_chinensis RchiOBHm_Chr7g0217631
rosa_laevigata RLG00000002455
rosa_multiflora Rmu_sc0015965.1_g000001
rosa_roxburghii Rroxscaffold_3G00241790
rosa_rugosa Rorug07G0170500
rosa_samantha Rh7AG310600 Rh7BG301900 Rh7CG329600 Rh7DG310700
rosa_wichuraiana Rw7G026370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 74
AccI GTMKAC 1 cut(s) 394
AciI CCGC 4 cut(s) 47, 518, 753, 1210
AclWI GGATC 3 cut(s) 133, 431, 1135
AcsI RAATTY 2 cut(s) 275, 1015
AfaI GTAC 2 cut(s) 877, 1174
AfiI CCNNNNNNNGG 3 cut(s) 300, 896, 977
AgsI TTSAA 6 cut(s) 16, 773, 940, 947, 1021, 1073
AjnI CCWGG 3 cut(s) 190, 813, 1084
AluBI AGCT 3 cut(s) 356, 499, 1118
AluI AGCT 3 cut(s) 356, 499, 1118
Alw21I GWGCWC 1 cut(s) 1129
Alw26I GTCTC 1 cut(s) 80
AlwI GGATC 3 cut(s) 133, 431, 1135
AoxI GGCC 1 cut(s) 575
ApeKI GCWGC 2 cut(s) 499, 1185
ApoI RAATTY 2 cut(s) 275, 1015
AspLEI GCGC 1 cut(s) 348
AspS9I GGNCC 2 cut(s) 383, 575
AsuHPI GGTGA 1 cut(s) 751
AvaII GGWCC 1 cut(s) 383
AxyI CCTNAGG 1 cut(s) 150
BaeGI GKGCMC 1 cut(s) 79
BanI GGYRCC 1 cut(s) 74
BbsI GAAGAC 2 cut(s) 197, 221
Bbv12I GWGCWC 1 cut(s) 1129
BbvI GCAGC 2 cut(s) 486, 1172
BccI CCATC 4 cut(s) 446, 845, 956, 1147
BceAI ACGGC 2 cut(s) 60, 359
BciT130I CCWGG 3 cut(s) 192, 815, 1086
BciVI GTATCC 1 cut(s) 949
BcoDI GTCTC 1 cut(s) 80
BfaI CTAG 3 cut(s) 311, 423, 1032
BfmI CTRYAG 1 cut(s) 1186
BfuI GTATCC 1 cut(s) 949
BisI GCNGC 2 cut(s) 500, 1186
BlsI GCNGC 2 cut(s) 501, 1187
Bme1390I CCNGG 3 cut(s) 192, 815, 1086
Bme18I GGWCC 1 cut(s) 383
BmgT120I GGNCC 2 cut(s) 383, 575
BmiI GGNNCC 2 cut(s) 76, 385
BmrFI CCNGG 3 cut(s) 192, 815, 1086
BmrI ACTGGG 2 cut(s) 582, 925
BmsI GCATC 3 cut(s) 253, 377, 910
BmuI ACTGGG 2 cut(s) 582, 925
BoxI GACNNNNGTC 1 cut(s) 221
BpiI GAAGAC 2 cut(s) 197, 221
BpuEI CTTGAG 2 cut(s) 859, 1184
Bsa29I ATCGAT 1 cut(s) 625
BsaAI YACGTR 1 cut(s) 446
BsaBI GATNNNNATC 2 cut(s) 924, 966
BsaJI CCNNGG 1 cut(s) 341
BsaWI WCCGGW 1 cut(s) 997
BsaXI ACNNNNNCTCC 4 cut(s) 45, 51, 75, 81
Bsc4I CCNNNNNNNGG 3 cut(s) 300, 896, 977
Bse1I ACTGG 3 cut(s) 577, 727, 920
Bse21I CCTNAGG 1 cut(s) 150
Bse8I GATNNNNATC 2 cut(s) 924, 966
BseBI CCWGG 3 cut(s) 192, 815, 1086
BseCI ATCGAT 1 cut(s) 625
BseDI CCNNGG 1 cut(s) 341
BseGI GGATG 4 cut(s) 244, 856, 925, 967
BseJI GATNNNNATC 2 cut(s) 924, 966
BseLI CCNNNNNNNGG 3 cut(s) 300, 896, 977
BseMII CTCAG 3 cut(s) 75, 164, 576
BseNI ACTGG 3 cut(s) 577, 727, 920
BseRI GAGGAG 1 cut(s) 138
BseSI GKGCMC 1 cut(s) 79
BseXI GCAGC 2 cut(s) 486, 1172
BseYI CCCAGC 1 cut(s) 281
BshFI GGCC 1 cut(s) 577
BshNI GGYRCC 1 cut(s) 74
BshVI ATCGAT 1 cut(s) 625
BsiHKAI GWGCWC 1 cut(s) 1129
BsiSI CCGG 1 cut(s) 998
BslFI GGGAC 3 cut(s) 369, 615, 767
BslI CCNNNNNNNGG 3 cut(s) 300, 896, 977
BsmAI GTCTC 1 cut(s) 80
BsmFI GGGAC 3 cut(s) 369, 615, 767
BsnI GGCC 1 cut(s) 577
Bsp1286I GDGCHC 2 cut(s) 79, 1129
Bsp1407I TGTACA 2 cut(s) 875, 1172
Bsp143I GATC 4 cut(s) 125, 436, 622, 1140
BspACI CCGC 4 cut(s) 47, 518, 753, 1210
BspANI GGCC 1 cut(s) 577
BspCNI CTCAG 3 cut(s) 76, 163, 575
BspDI ATCGAT 1 cut(s) 625
BspHI TCATGA 1 cut(s) 331
BspLI GGNNCC 2 cut(s) 76, 385
BspMAI CTGCAG 1 cut(s) 1190
BspPI GGATC 3 cut(s) 133, 431, 1135
BspT107I GGYRCC 1 cut(s) 74
BsrGI TGTACA 2 cut(s) 875, 1172
BsrI ACTGG 3 cut(s) 577, 727, 920
BssECI CCNNGG 1 cut(s) 341
BssMI GATC 4 cut(s) 125, 436, 622, 1140
Bst2UI CCWGG 3 cut(s) 192, 815, 1086
Bst4CI ACNGT 2 cut(s) 40, 993
BstAPI GCANNNNNTGC 1 cut(s) 499
BstAUI TGTACA 2 cut(s) 875, 1172
BstBAI YACGTR 1 cut(s) 446
BstC8I GCNNGC 3 cut(s) 642, 751, 1008
BstDEI CTNAG 6 cut(s) 84, 90, 150, 219, 319, 562
BstDSI CCRYGG 1 cut(s) 341
BstENI CCTNNNNNAGG 1 cut(s) 975
BstF5I GGATG 4 cut(s) 244, 856, 925, 967
BstHHI GCGC 1 cut(s) 348
BstKTI GATC 4 cut(s) 128, 439, 625, 1143
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 4 cut(s) 125, 436, 622, 1140
BstMWI GCNNNNNNNGC 4 cut(s) 499, 1057, 1115, 1124
BstNI CCWGG 3 cut(s) 192, 815, 1086
BstPAI GACNNNNGTC 1 cut(s) 221
BstSCI CCNGG 3 cut(s) 190, 813, 1084
BstSFI CTRYAG 1 cut(s) 1186
BstSLI GKGCMC 1 cut(s) 79
BstSNI TACGTA 1 cut(s) 446
BstV1I GCAGC 2 cut(s) 486, 1172
BstV2I GAAGAC 2 cut(s) 197, 221
BstX2I RGATCY 1 cut(s) 436
BstXI CCANNNNNNTGG 1 cut(s) 251
BstYI RGATCY 1 cut(s) 436
Bsu15I ATCGAT 1 cut(s) 625
Bsu36I CCTNAGG 1 cut(s) 150
BsuI GTATCC 1 cut(s) 949
BsuRI GGCC 1 cut(s) 577
BsuTUI ATCGAT 1 cut(s) 625
BtgI CCRYGG 1 cut(s) 341
BtsCI GGATG 4 cut(s) 244, 856, 925, 967
BtsI GCAGTG 3 cut(s) 744, 791, 1060
BtsIMutI CAGTG 4 cut(s) 720, 744, 791, 1060
Cac8I GCNNGC 3 cut(s) 642, 751, 1008
CciI TCATGA 1 cut(s) 331
CfoI GCGC 1 cut(s) 348
Cfr13I GGNCC 2 cut(s) 383, 575
ClaI ATCGAT 1 cut(s) 625
CseI GACGC 1 cut(s) 873
Csp6I GTAC 2 cut(s) 876, 1173
CviQI GTAC 2 cut(s) 876, 1173
DdeI CTNAG 6 cut(s) 84, 90, 150, 219, 319, 562
DpnI GATC 4 cut(s) 127, 438, 624, 1142
DpnII GATC 4 cut(s) 125, 436, 622, 1140
DraI TTTAAA 1 cut(s) 634
Eco105I TACGTA 1 cut(s) 446
Eco32I GATATC 2 cut(s) 728, 1100
Eco47I GGWCC 1 cut(s) 383
Eco81I CCTNAGG 1 cut(s) 150
EcoNI CCTNNNNNAGG 1 cut(s) 975
EcoRII CCWGG 3 cut(s) 190, 813, 1084
EcoRV GATATC 2 cut(s) 728, 1100
EcoT22I ATGCAT 1 cut(s) 370
FaqI GGGAC 3 cut(s) 369, 615, 767
FauI CCCGC 1 cut(s) 1203
FauNDI CATATG 1 cut(s) 880
FblI GTMKAC 1 cut(s) 394
Fnu4HI GCNGC 2 cut(s) 500, 1186
FokI GGATG 4 cut(s) 251, 863, 932, 974
Fsp4HI GCNGC 2 cut(s) 500, 1186
FspBI CTAG 3 cut(s) 311, 423, 1032
GlaI GCGC 1 cut(s) 347
GluI GCNGC 2 cut(s) 500, 1186
GsaI CCCAGC 1 cut(s) 285
HaeIII GGCC 1 cut(s) 577
HapII CCGG 1 cut(s) 998
HgaI GACGC 1 cut(s) 873
HhaI GCGC 1 cut(s) 348
Hin6I GCGC 1 cut(s) 346
HinP1I GCGC 1 cut(s) 346
HincII GTYRAC 2 cut(s) 36, 825
HindII GTYRAC 2 cut(s) 36, 825
HinfI GANTC 3 cut(s) 593, 756, 810
HpaI GTTAAC 1 cut(s) 825
HpaII CCGG 1 cut(s) 998
HphI GGTGA 1 cut(s) 751
Hpy166II GTNNAC 5 cut(s) 36, 341, 395, 473, 825
Hpy188I TCNGA 2 cut(s) 85, 1097
Hpy188III TCNNGA 4 cut(s) 152, 332, 1070, 1201
Hpy8I GTNNAC 5 cut(s) 36, 341, 395, 473, 825
HpyAV CCTTC 1 cut(s) 90
HpyCH4III ACNGT 2 cut(s) 40, 993
HpyCH4IV ACGT 2 cut(s) 445, 604
HpyF10VI GCNNNNNNNGC 4 cut(s) 499, 1057, 1115, 1124
HpyF3I CTNAG 6 cut(s) 84, 90, 150, 219, 319, 562
HpySE526I ACGT 2 cut(s) 445, 604
HspAI GCGC 1 cut(s) 346
KspAI GTTAAC 1 cut(s) 825
Kzo9I GATC 4 cut(s) 125, 436, 622, 1140
LmnI GCTCC 2 cut(s) 151, 899
Lsp1109I GCAGC 2 cut(s) 486, 1172
LweI GCATC 3 cut(s) 253, 377, 910
MaeI CTAG 3 cut(s) 311, 423, 1032
MaeII ACGT 2 cut(s) 445, 604
MaeIII GTNAC 6 cut(s) 40, 194, 520, 742, 993, 1027
MalI GATC 4 cut(s) 127, 438, 624, 1142
MboI GATC 4 cut(s) 125, 436, 622, 1140
MboII GAAGA 2 cut(s) 197, 226
MfeI CAATTG 1 cut(s) 903
MflI RGATCY 1 cut(s) 436
MhlI GDGCHC 2 cut(s) 79, 1129
MluCI AATT 7 cut(s) 275, 699, 856, 892, 903, 1001, 1015
MmeI TCCRAC 2 cut(s) 31, 536
MnlI CCTC 5 cut(s) 159, 339, 648, 945, 1206
Mph1103I ATGCAT 1 cut(s) 370
MseI TTAA 3 cut(s) 257, 633, 824
MslI CAYNNNNRTG 1 cut(s) 249
MspA1I CMGCKG 1 cut(s) 518
MspI CCGG 1 cut(s) 998
MspR9I CCNGG 3 cut(s) 192, 815, 1086
MunI CAATTG 1 cut(s) 903
MvaI CCWGG 3 cut(s) 192, 815, 1086
MwoI GCNNNNNNNGC 4 cut(s) 499, 1057, 1115, 1124
NdeI CATATG 1 cut(s) 880
NdeII GATC 4 cut(s) 125, 436, 622, 1140
NlaIV GGNNCC 2 cut(s) 76, 385
NmuCI GTSAC 2 cut(s) 742, 1027
NsiI ATGCAT 1 cut(s) 370
PagI TCATGA 1 cut(s) 331
PfeI GAWTC 3 cut(s) 593, 756, 810
PkrI GCNGC 2 cut(s) 501, 1187
Ppu21I YACGTR 1 cut(s) 446
PshAI GACNNNNGTC 1 cut(s) 221
Psp6I CCWGG 3 cut(s) 190, 813, 1084
PspFI CCCAGC 1 cut(s) 281
PspGI CCWGG 3 cut(s) 190, 813, 1084
PspN4I GGNNCC 2 cut(s) 76, 385
PspPI GGNCC 2 cut(s) 383, 575
PstI CTGCAG 1 cut(s) 1190
PsuI RGATCY 1 cut(s) 436
RsaI GTAC 2 cut(s) 877, 1174
RsaNI GTAC 2 cut(s) 876, 1173
RseI CAYNNNNRTG 1 cut(s) 249
SaqAI TTAA 3 cut(s) 257, 633, 824
SatI GCNGC 2 cut(s) 500, 1186
Sau3AI GATC 4 cut(s) 125, 436, 622, 1140
Sau96I GGNCC 2 cut(s) 383, 575
ScrFI CCNGG 3 cut(s) 192, 815, 1086
SduI GDGCHC 2 cut(s) 79, 1129
SfaNI GCATC 3 cut(s) 253, 377, 910
SfcI CTRYAG 1 cut(s) 1186
SinI GGWCC 1 cut(s) 383
SmiMI CAYNNNNRTG 1 cut(s) 249
SmlI CTYRAG 2 cut(s) 838, 1199
SmoI CTYRAG 2 cut(s) 838, 1199
SnaBI TACGTA 1 cut(s) 446
Sse9I AATT 7 cut(s) 275, 699, 856, 892, 903, 1001, 1015
SsiI CCGC 4 cut(s) 47, 518, 753, 1210
SspMI CTAG 3 cut(s) 311, 423, 1032
StyD4I CCNGG 3 cut(s) 190, 813, 1084
TaaI ACNGT 2 cut(s) 40, 993
TaiI ACGT 2 cut(s) 448, 607
TaqI TCGA 2 cut(s) 208, 625
TasI AATT 7 cut(s) 275, 699, 856, 892, 903, 1001, 1015
TatI WGTACW 2 cut(s) 875, 1172
TfiI GAWTC 3 cut(s) 593, 756, 810
Tru1I TTAA 3 cut(s) 257, 633, 824
Tru9I TTAA 3 cut(s) 257, 633, 824
TscAI CASTG 4 cut(s) 727, 751, 798, 1067
TseFI GTSAC 2 cut(s) 742, 1027
TseI GCWGC 2 cut(s) 499, 1185
Tsp45I GTSAC 2 cut(s) 742, 1027
TspDTI ATGAA 3 cut(s) 173, 661, 677
TspGWI ACGGA 1 cut(s) 974
TspRI CASTG 4 cut(s) 727, 751, 798, 1067
VpaK11BI GGWCC 1 cut(s) 383
XagI CCTNNNNNAGG 1 cut(s) 975
XapI RAATTY 2 cut(s) 275, 1015
XmiI GTMKAC 1 cut(s) 394
XspI CTAG 3 cut(s) 311, 423, 1032
Zsp2I ATGCAT 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.