Rmu_sc0015965.1_g000001

PhoD-like phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015965.1
OG0013277
Physical Location & Seq
Reverse (-)
706 .. 1663
958 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015965.1_g000001.1.cds

Sequence Viewer

Length: 666 bp
atgaagtgtggcatgttgttttttagttttactacctgctatccctttctctggggtgagagctatcagctccagtttttacaaatcttgttccttgtgcagaggggtggagtgtttttcattagtggagatgttcattttggagaaattacaagatatgattgtgccactggatatccattgtatgatgtaactgcaagcggaatcacccaagcagttgaaaaggtagttccaatgccgctgcatttcctagtgagatttctggcatggttgactcctgccaccttgagagtaatggatggaaactgcagacgcaggtcatgcacatatggcatgcaaaattttggagcaatcgagatagactggcatgcaactcctgtgacattgaaaattcaagtgagggatacggatggcgatcctgtggtaggtgtaactgcaccattatcggaattgcaagcaagaaatttcaactatgtgactagcaataaagcaggaaagcaccaaaggcactgccatcttgaaatcaatcaaccagggattgtcagatatcgcttggctattttagcttattgttctctatccggattggtcctcgctatgatgggtctgatctggcttgctacattatgttgctgtcgatgttcccgcaagaaaaagcgcgagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00790 ko01100 ko02020 map00790 map01100 map02020
Pfam Domains
Protein Families
PhoD

Protein Analysis

221

Amino Acids

25.05

Weight (kDa)

9.0

Isoelectric Point (pI)

40.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013277)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42370 AT5G42370
fragaria_vesca FvH4_5g26760 FvH4_5g26760 FvH4_5g26760 FvH4_5g26760
prunus_persica Prupe.5G000900_v2.0.a1
pyrus_communis pycom16g26350
rosa_chinensis RchiOBHm_Chr7g0217631
rosa_laevigata RLG00000002455
rosa_multiflora Rmu_sc0015965.1_g000001
rosa_roxburghii Rroxscaffold_3G00241790
rosa_rugosa Rorug07G0170500
rosa_samantha Rh7AG310600 Rh7BG301900 Rh7CG329600 Rh7DG310700
rosa_wichuraiana Rw7G026370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 44, 306
AccII CGCG 1 cut(s) 660
AccIII TCCGGA 1 cut(s) 581
AciI CCGC 3 cut(s) 201, 239, 646
AclWI GGATC 1 cut(s) 410
AcsI RAATTY 3 cut(s) 340, 390, 463
AfiI CCNNNNNNNGG 2 cut(s) 51, 425
AgsI TTSAA 5 cut(s) 221, 388, 395, 469, 521
AjnI CCWGG 1 cut(s) 532
AluBI AGCT 3 cut(s) 63, 70, 566
AluI AGCT 3 cut(s) 63, 70, 566
AlwI GGATC 1 cut(s) 410
Aor13HI TCCGGA 1 cut(s) 581
ApeKI GCWGC 1 cut(s) 241
ApoI RAATTY 3 cut(s) 340, 390, 463
AspLEI GCGC 1 cut(s) 660
AspS9I GGNCC 1 cut(s) 589
AsuHPI GGTGA 2 cut(s) 68, 199
AvaII GGWCC 1 cut(s) 589
BbvI GCAGC 1 cut(s) 228
BccI CCATC 4 cut(s) 293, 404, 522, 595
BcgI CGANNNNNNTGC 2 cut(s) 426, 460
BciT130I CCWGG 1 cut(s) 534
BciVI GTATCC 1 cut(s) 397
BfaI CTAG 2 cut(s) 251, 480
BfmI CTRYAG 1 cut(s) 307
BfuAI ACCTGC 2 cut(s) 44, 306
BfuI GTATCC 1 cut(s) 397
BisI GCNGC 2 cut(s) 239, 242
BlsI GCNGC 2 cut(s) 240, 243
Bme1390I CCNGG 1 cut(s) 534
Bme18I GGWCC 1 cut(s) 589
BmgT120I GGNCC 1 cut(s) 589
BmrFI CCNGG 1 cut(s) 534
BoxI GACNNNNGTC 1 cut(s) 316
BpmI CTGGAG 1 cut(s) 56
BpuEI CTTGAG 1 cut(s) 307
BsaBI GATNNNNATC 1 cut(s) 414
BsaJI CCNNGG 1 cut(s) 533
BsaWI WCCGGW 1 cut(s) 581
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 425
Bse1I ACTGG 3 cut(s) 73, 175, 368
Bse8I GATNNNNATC 1 cut(s) 414
BseAI TCCGGA 1 cut(s) 581
BseBI CCWGG 1 cut(s) 534
BseDI CCNNGG 1 cut(s) 533
BseGI GGATG 2 cut(s) 304, 415
BseJI GATNNNNATC 1 cut(s) 414
BseLI CCNNNNNNNGG 2 cut(s) 51, 425
BseNI ACTGG 3 cut(s) 73, 175, 368
BseXI GCAGC 1 cut(s) 228
BsgI GTGCAG 2 cut(s) 119, 420
Bsh1236I CGCG 1 cut(s) 660
BsiSI CCGG 1 cut(s) 582
BslI CCNNNNNNNGG 2 cut(s) 51, 425
Bsp13I TCCGGA 1 cut(s) 581
Bsp143I GATC 2 cut(s) 415, 609
BspACI CCGC 3 cut(s) 201, 239, 646
BspEI TCCGGA 1 cut(s) 581
BspFNI CGCG 1 cut(s) 660
BspMAI CTGCAG 1 cut(s) 311
BspMI ACCTGC 2 cut(s) 44, 306
BspPI GGATC 1 cut(s) 410
BsrI ACTGG 3 cut(s) 73, 175, 368
BssECI CCNNGG 1 cut(s) 533
BssMI GATC 2 cut(s) 415, 609
Bst2UI CCWGG 1 cut(s) 534
BstAPI GCANNNNNTGC 1 cut(s) 321
BstC8I GCNNGC 5 cut(s) 199, 335, 369, 456, 618
BstENI CCTNNNNNAGG 1 cut(s) 423
BstF5I GGATG 2 cut(s) 304, 415
BstFNI CGCG 1 cut(s) 660
BstHHI GCGC 1 cut(s) 660
BstKTI GATC 2 cut(s) 418, 612
BstMBI GATC 2 cut(s) 415, 609
BstMWI GCNNNNNNNGC 4 cut(s) 321, 330, 505, 563
BstNI CCWGG 1 cut(s) 534
BstNSI RCATGY 3 cut(s) 16, 337, 371
BstPAI GACNNNNGTC 1 cut(s) 316
BstSCI CCNGG 1 cut(s) 532
BstSFI CTRYAG 1 cut(s) 307
BstUI CGCG 1 cut(s) 660
BstV1I GCAGC 1 cut(s) 228
BsuI GTATCC 1 cut(s) 397
BtsCI GGATG 2 cut(s) 304, 415
BtsI GCAGTG 1 cut(s) 508
BtsIMutI CAGTG 2 cut(s) 168, 508
BveI ACCTGC 2 cut(s) 44, 306
Cac8I GCNNGC 5 cut(s) 199, 335, 369, 456, 618
CfoI GCGC 1 cut(s) 660
Cfr13I GGNCC 1 cut(s) 589
CseI GACGC 1 cut(s) 321
CviAII CATG 5 cut(s) 13, 267, 321, 334, 368
CviJI RGCY 5 cut(s) 63, 70, 557, 566, 616
CviKI_1 RGCY 5 cut(s) 63, 70, 557, 566, 616
DpnI GATC 2 cut(s) 417, 611
DpnII GATC 2 cut(s) 415, 609
Eco32I GATATC 2 cut(s) 176, 548
Eco47I GGWCC 1 cut(s) 589
EcoNI CCTNNNNNAGG 1 cut(s) 423
EcoRII CCWGG 1 cut(s) 532
EcoRV GATATC 2 cut(s) 176, 548
FaeI CATG 5 cut(s) 16, 270, 324, 337, 371
FatI CATG 5 cut(s) 12, 266, 320, 333, 367
FauI CCCGC 1 cut(s) 653
FauNDI CATATG 1 cut(s) 328
Fnu4HI GCNGC 2 cut(s) 239, 242
FokI GGATG 2 cut(s) 311, 422
Fsp4HI GCNGC 2 cut(s) 239, 242
FspBI CTAG 2 cut(s) 251, 480
GlaI GCGC 1 cut(s) 659
GluI GCNGC 2 cut(s) 239, 242
GsuI CTGGAG 1 cut(s) 56
HapII CCGG 1 cut(s) 582
HgaI GACGC 1 cut(s) 321
HhaI GCGC 1 cut(s) 660
Hin1II CATG 5 cut(s) 16, 270, 324, 337, 371
Hin6I GCGC 1 cut(s) 658
HinP1I GCGC 1 cut(s) 658
HincII GTYRAC 1 cut(s) 273
HindII GTYRAC 1 cut(s) 273
HinfI GANTC 2 cut(s) 204, 274
HpaII CCGG 1 cut(s) 582
HphI GGTGA 2 cut(s) 68, 199
Hpy166II GTNNAC 1 cut(s) 273
Hpy188I TCNGA 3 cut(s) 448, 545, 609
Hpy188III TCNNGA 3 cut(s) 355, 518, 582
Hpy8I GTNNAC 1 cut(s) 273
HpyCH4V TGCA 9 cut(s) 100, 197, 244, 309, 324, 337, 371, 437, 454
HpyF10VI GCNNNNNNNGC 4 cut(s) 321, 330, 505, 563
Hsp92II CATG 5 cut(s) 16, 270, 324, 337, 371
HspAI GCGC 1 cut(s) 658
Kpn2I TCCGGA 1 cut(s) 581
Kzo9I GATC 2 cut(s) 415, 609
LmnI GCTCC 2 cut(s) 75, 347
Lsp1109I GCAGC 1 cut(s) 228
MaeI CTAG 2 cut(s) 251, 480
MaeIII GTNAC 4 cut(s) 190, 379, 430, 475
MalI GATC 2 cut(s) 417, 611
MboI GATC 2 cut(s) 415, 609
MluCI AATT 5 cut(s) 147, 340, 390, 449, 463
MlyI GAGTC 1 cut(s) 268
MnlI CCTC 3 cut(s) 96, 393, 602
MroI TCCGGA 1 cut(s) 581
MspA1I CMGCKG 1 cut(s) 241
MspI CCGG 1 cut(s) 582
MspR9I CCNGG 1 cut(s) 534
MvaI CCWGG 1 cut(s) 534
MvnI CGCG 1 cut(s) 660
MwoI GCNNNNNNNGC 4 cut(s) 321, 330, 505, 563
NdeI CATATG 1 cut(s) 328
NdeII GATC 2 cut(s) 415, 609
NlaIII CATG 5 cut(s) 16, 270, 324, 337, 371
NmuCI GTSAC 2 cut(s) 379, 475
NspI RCATGY 3 cut(s) 16, 337, 371
PaeI GCATGC 2 cut(s) 337, 371
PfeI GAWTC 1 cut(s) 204
PkrI GCNGC 2 cut(s) 240, 243
PleI GAGTC 1 cut(s) 268
PpsI GAGTC 1 cut(s) 268
PshAI GACNNNNGTC 1 cut(s) 316
Psp6I CCWGG 1 cut(s) 532
PspGI CCWGG 1 cut(s) 532
PspPI GGNCC 1 cut(s) 589
PstI CTGCAG 1 cut(s) 311
SatI GCNGC 2 cut(s) 239, 242
Sau3AI GATC 2 cut(s) 415, 609
Sau96I GGNCC 1 cut(s) 589
SchI GAGTC 1 cut(s) 268
ScrFI CCNGG 1 cut(s) 534
SetI ASST 8 cut(s) 38, 65, 72, 228, 287, 320, 430, 568
SfcI CTRYAG 1 cut(s) 307
SinI GGWCC 1 cut(s) 589
SmlI CTYRAG 1 cut(s) 286
SmoI CTYRAG 1 cut(s) 286
SphI GCATGC 2 cut(s) 337, 371
Sse9I AATT 5 cut(s) 147, 340, 390, 449, 463
SsiI CCGC 3 cut(s) 201, 239, 646
SspMI CTAG 2 cut(s) 251, 480
StyD4I CCNGG 1 cut(s) 532
TaqI TCGA 2 cut(s) 354, 637
TasI AATT 5 cut(s) 147, 340, 390, 449, 463
TauI GCSGC 1 cut(s) 241
TfiI GAWTC 1 cut(s) 204
TscAI CASTG 2 cut(s) 175, 515
TseFI GTSAC 2 cut(s) 379, 475
TseI GCWGC 1 cut(s) 241
Tsp45I GTSAC 2 cut(s) 379, 475
TspDTI ATGAA 3 cut(s) 17, 109, 125
TspGWI ACGGA 1 cut(s) 422
TspRI CASTG 2 cut(s) 175, 515
VpaK11BI GGWCC 1 cut(s) 589
XagI CCTNNNNNAGG 1 cut(s) 423
XapI RAATTY 3 cut(s) 340, 390, 463
XceI RCATGY 3 cut(s) 16, 337, 371
XspI CTAG 2 cut(s) 251, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.