Prupe.5G000900_v2.0.a1

PhoD-like phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0013277
Physical Location & Seq
Forward (+)
240106 .. 244421
4316 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G000900.1

Sequence Viewer

Length: 1356 bp
ATGGTTTGGAAGTGGTGGTGGATGTTGACAGTGACGGCGATTGGAGTGGTGGCATGGGGCGTCCCTTCCGAGCAGCAGCGTCTGGTTACTCGTATTGCGTTTGGATCATGTGCCAACCAAAGCGCTCCTCAGCCCATCTGGAATGCAATAATCTCATTTGATCCCCAAGTTTTCATTTGGCTTGGTGATAACATTTATGGAGACATTAGGCGTCCTTTTAAACTATTTGGAAAAGAAAGAACAATTGGACCGTGGAAGAATGCCCCAAGATTTGTTCCTTCTACTGAGCAGGAAATGAAGTCTAGATATGAGAAAGCCAAGTCTAACCCTGGTTATTCTCGTCTTCAAGAGAATACTAAGGTAATTGGCACATGGGATGACCACGATTATGGATTAAATGATGCAGGAAAAGAATTTTCCGGGAAAATAACTAATCAAAGACTTCTCCTTGATTTCTTGGATGAGCCGGAAAATAGTCCACGGCGCAAGCAAGACGGAGTTTATGCATCTTACACACTTGGCCCCATGGGTAGACAAATCAAGGTTATACTATTAGATACTAGGTACCACCGAGACCCTTTACGTAGTGATGGAACTATTTTGGGACACTCACAGTGGGAATGGTTAGAAAAAGAGCTGAATGATTCTCCAACAGCCGTTACAATTATTGGATCTTCTATACAGGTAATATCAAATCTGTCAGCAACCACTGGGCCATTGTTTTACATGGAGTCTTGGGGACGTTTTCCAAAGGAGAGAGATCGGCTATTTAAATTGATAGCAGATAGTAAGAGGGATGGAGTGTTTTTCATAAGTGGAGATGTTCACTTTGGAGAAATTACACGTTATGATTGTGCCACTGGATATCCATTGTATGATGTTACTTCAAGTGGGATAACCCAAGCAGTTGAGAAAGTAGTCCCACCACCGTTACATTTCTTTGTGAGATTTCTGGCATGGTTAACTCCTAACACTATGAGAGTTATGGACCAAAACTGCAGATACAGGTCGTGCACATATGGCATGTCTAATTTCGGAGCAGTTGAGATAGACTGGGATGCGACTCCTGTGACATTGAAGATTCAAGTCAGGGATATAAACGGAAATCCTGTGACAGGTGTAACTACATCGCTATCGGAACTGCAAGCAAGAAATTCCACCTCTTCAACCACCAAGAAAGCAAGAGAGCATCACAGGCACTGCTCTCTTGAAAGCACTCTACCATGGATTGTTAGATATCGCCTGGCTATTTTAGCTTACTGTGCTGTAGCGACTTTTGTCCTTGCTTTGATAGGAGTAATTTGGGCTAGTATATTAGCGTGCAGGAGATGCGCCCGCAAAAGAAAGTGCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00790 ko01100 ko02020 map00790 map01100 map02020
Pfam Domains
Protein Families
PhoD

Protein Analysis

452

Amino Acids

51.37

Weight (kDa)

9.16

Isoelectric Point (pI)

38.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013277)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42370 AT5G42370
fragaria_vesca FvH4_5g26760 FvH4_5g26760 FvH4_5g26760 FvH4_5g26760
prunus_persica Prupe.5G000900_v2.0.a1
pyrus_communis pycom16g26350
rosa_chinensis RchiOBHm_Chr7g0217631
rosa_laevigata RLG00000002455
rosa_multiflora Rmu_sc0015965.1_g000001
rosa_roxburghii Rroxscaffold_3G00241790
rosa_rugosa Rorug07G0170500
rosa_samantha Rh7AG310600 Rh7BG301900 Rh7CG329600 Rh7DG310700
rosa_wichuraiana Rw7G026370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 564
AccB1I GGYRCC 1 cut(s) 564
AccI GTMKAC 1 cut(s) 532
AciI CCGC 1 cut(s) 1336
AclWI GGATC 3 cut(s) 112, 155, 679
AcsI RAATTY 2 cut(s) 413, 1153
AcyI GRCGYC 2 cut(s) 60, 211
AfaI GTAC 1 cut(s) 566
AfeI AGCGCT 1 cut(s) 124
AfiI CCNNNNNNNGG 1 cut(s) 1115
AflIII ACRYGT 1 cut(s) 842
AgsI TTSAA 6 cut(s) 347, 888, 1078, 1085, 1167, 1211
AjnI CCWGG 2 cut(s) 328, 1242
AjuI GAANNNNNNNTTGG 2 cut(s) 228, 260
AluBI AGCT 2 cut(s) 637, 1256
AluI AGCT 2 cut(s) 637, 1256
Alw21I GWGCWC 1 cut(s) 1016
Alw26I GTCTC 2 cut(s) 195, 567
Alw44I GTGCAC 1 cut(s) 1012
AlwI GGATC 3 cut(s) 112, 155, 679
AlwNI CAGNNNCTG 2 cut(s) 82, 1200
Aor51HI AGCGCT 1 cut(s) 124
AoxI GGCC 2 cut(s) 520, 713
ApaLI GTGCAC 1 cut(s) 1012
ApeKI GCWGC 2 cut(s) 73, 76
ApoI RAATTY 2 cut(s) 413, 1153
Asp718I GGTACC 1 cut(s) 564
AspLEI GCGC 3 cut(s) 125, 486, 1334
AspS9I GGNCC 4 cut(s) 248, 521, 713, 988
AsuC2I CCSGG 1 cut(s) 421
AsuHPI GGTGA 1 cut(s) 197
AvaII GGWCC 2 cut(s) 248, 988
BaeGI GKGCMC 1 cut(s) 1016
BanI GGYRCC 1 cut(s) 564
BbsI GAAGAC 1 cut(s) 335
Bbv12I GWGCWC 1 cut(s) 1016
BbvCI CCTCAGC 1 cut(s) 129
BbvI GCAGC 2 cut(s) 85, 88
BccI CCATC 3 cut(s) 143, 584, 791
BceAI ACGGC 3 cut(s) 51, 497, 641
BciT130I CCWGG 2 cut(s) 330, 1244
BcnI CCSGG 1 cut(s) 421
BcoDI GTCTC 2 cut(s) 195, 567
BfaI CTAG 3 cut(s) 303, 561, 1308
BfmI CTRYAG 2 cut(s) 997, 1266
BfoI RGCGCY 1 cut(s) 126
BisI GCNGC 2 cut(s) 74, 77
BlsI GCNGC 2 cut(s) 75, 78
Bme1390I CCNGG 3 cut(s) 330, 421, 1244
Bme18I GGWCC 2 cut(s) 248, 988
BmgT120I GGNCC 4 cut(s) 248, 521, 713, 988
BmiI GGNNCC 2 cut(s) 523, 566
BmrFI CCNGG 3 cut(s) 330, 421, 1244
BmrI ACTGGG 2 cut(s) 720, 1063
BmsI GCATC 5 cut(s) 391, 515, 1048, 1198, 1319
BmuI ACTGGG 2 cut(s) 720, 1063
BoxI GACNNNNGTC 1 cut(s) 1277
BpiI GAAGAC 1 cut(s) 335
Bpu10I CCTNAGC 1 cut(s) 129
BpuMI CCSGG 1 cut(s) 421
BsaAI YACGTR 1 cut(s) 584
BsaHI GRCGYC 2 cut(s) 60, 211
BsaI GGTCTC 1 cut(s) 567
BsaJI CCNNGG 5 cut(s) 251, 328, 479, 525, 1223
Bsc4I CCNNNNNNNGG 1 cut(s) 1115
Bse1I ACTGG 3 cut(s) 715, 865, 1058
BseBI CCWGG 2 cut(s) 330, 1244
BseDI CCNNGG 5 cut(s) 251, 328, 479, 525, 1223
BseGI GGATG 5 cut(s) 27, 382, 466, 802, 1063
BseLI CCNNNNNNNGG 1 cut(s) 1115
BseMII CTCAG 2 cut(s) 143, 276
BseNI ACTGG 3 cut(s) 715, 865, 1058
BseRI GAGGAG 1 cut(s) 117
BseSI GKGCMC 1 cut(s) 1016
BseXI GCAGC 2 cut(s) 85, 88
BsgI GTGCAG 1 cut(s) 1342
BshFI GGCC 2 cut(s) 522, 715
BshNI GGYRCC 1 cut(s) 564
BsiHKAI GWGCWC 1 cut(s) 1016
BsiSI CCGG 2 cut(s) 420, 467
BslFI GGGAC 4 cut(s) 47, 618, 753, 905
BslI CCNNNNNNNGG 1 cut(s) 1115
BsmAI GTCTC 2 cut(s) 195, 567
BsmFI GGGAC 4 cut(s) 47, 618, 753, 905
BsmI GAATGC 2 cut(s) 148, 265
BsnI GGCC 2 cut(s) 522, 715
Bso31I GGTCTC 1 cut(s) 567
Bsp1286I GDGCHC 1 cut(s) 1016
Bsp143I GATC 4 cut(s) 104, 160, 671, 760
Bsp19I CCATGG 2 cut(s) 525, 1223
BspACI CCGC 1 cut(s) 1336
BspANI GGCC 2 cut(s) 522, 715
BspCNI CTCAG 2 cut(s) 142, 277
BspLI GGNNCC 2 cut(s) 523, 566
BspMAI CTGCAG 1 cut(s) 1001
BspPI GGATC 3 cut(s) 112, 155, 679
BspT107I GGYRCC 1 cut(s) 564
BspTNI GGTCTC 1 cut(s) 567
BsrI ACTGG 3 cut(s) 715, 865, 1058
BssECI CCNNGG 5 cut(s) 251, 328, 479, 525, 1223
BssMI GATC 4 cut(s) 104, 160, 671, 760
BssNI GRCGYC 2 cut(s) 60, 211
BssT1I CCWWGG 2 cut(s) 525, 1223
Bst2UI CCWGG 2 cut(s) 330, 1244
Bst4CI ACNGT 5 cut(s) 31, 252, 615, 930, 1262
Bst6I CTCTTC 1 cut(s) 1168
BstACI GRCGYC 2 cut(s) 60, 211
BstAPI GCANNNNNTGC 1 cut(s) 1329
BstBAI YACGTR 1 cut(s) 584
BstC8I GCNNGC 4 cut(s) 488, 1146, 1321, 1336
BstDEI CTNAG 3 cut(s) 129, 285, 357
BstDSI CCRYGG 4 cut(s) 251, 479, 525, 1223
BstENI CCTNNNNNAGG 1 cut(s) 1113
BstF5I GGATG 5 cut(s) 27, 382, 466, 802, 1063
BstH2I RGCGCY 1 cut(s) 126
BstHHI GCGC 3 cut(s) 125, 486, 1334
BstKTI GATC 4 cut(s) 107, 163, 674, 763
BstMAI GTCTC 2 cut(s) 195, 567
BstMBI GATC 4 cut(s) 104, 160, 671, 760
BstMWI GCNNNNNNNGC 5 cut(s) 1020, 1195, 1253, 1262, 1329
BstNI CCWGG 2 cut(s) 330, 1244
BstNSI RCATGY 1 cut(s) 1027
BstPAI GACNNNNGTC 1 cut(s) 1277
BstSCI CCNGG 3 cut(s) 328, 419, 1242
BstSFI CTRYAG 2 cut(s) 997, 1266
BstSLI GKGCMC 1 cut(s) 1016
BstSNI TACGTA 1 cut(s) 584
BstV1I GCAGC 2 cut(s) 85, 88
BstV2I GAAGAC 1 cut(s) 335
BstX2I RGATCY 1 cut(s) 671
BstXI CCANNNNNNTGG 1 cut(s) 389
BstYI RGATCY 1 cut(s) 671
BsuRI GGCC 2 cut(s) 522, 715
BtgI CCRYGG 4 cut(s) 251, 479, 525, 1223
BtgZI GCGATG 1 cut(s) 1113
BtsCI GGATG 5 cut(s) 27, 382, 466, 802, 1063
BtsI GCAGTG 1 cut(s) 1198
BtsIMutI CAGTG 5 cut(s) 36, 620, 708, 858, 1198
Cac8I GCNNGC 4 cut(s) 488, 1146, 1321, 1336
CaiI CAGNNNCTG 2 cut(s) 82, 1200
CfoI GCGC 3 cut(s) 125, 486, 1334
Cfr13I GGNCC 4 cut(s) 248, 521, 713, 988
CseI GACGC 3 cut(s) 49, 68, 200
Csp6I GTAC 1 cut(s) 565
CviAII CATG 8 cut(s) 54, 108, 372, 526, 727, 957, 1024, 1224
CviQI GTAC 1 cut(s) 565
DdeI CTNAG 3 cut(s) 129, 285, 357
DpnI GATC 4 cut(s) 106, 162, 673, 762
DpnII GATC 4 cut(s) 104, 160, 671, 760
DraI TTTAAA 2 cut(s) 220, 772
Eam1104I CTCTTC 1 cut(s) 1168
EarI CTCTTC 1 cut(s) 1168
Eco105I TACGTA 1 cut(s) 584
Eco130I CCWWGG 2 cut(s) 525, 1223
Eco31I GGTCTC 1 cut(s) 567
Eco32I GATATC 2 cut(s) 866, 1238
Eco47I GGWCC 2 cut(s) 248, 988
Eco47III AGCGCT 1 cut(s) 124
EcoNI CCTNNNNNAGG 1 cut(s) 1113
EcoRII CCWGG 2 cut(s) 328, 1242
EcoRV GATATC 2 cut(s) 866, 1238
EcoT14I CCWWGG 2 cut(s) 525, 1223
EcoT22I ATGCAT 1 cut(s) 508
ErhI CCWWGG 2 cut(s) 525, 1223
FaeI CATG 8 cut(s) 57, 111, 375, 529, 730, 960, 1027, 1227
FaqI GGGAC 4 cut(s) 47, 618, 753, 905
FatI CATG 8 cut(s) 53, 107, 371, 525, 726, 956, 1023, 1223
FauI CCCGC 1 cut(s) 1343
FauNDI CATATG 1 cut(s) 1018
FblI GTMKAC 1 cut(s) 532
Fnu4HI GCNGC 2 cut(s) 74, 77
FokI GGATG 5 cut(s) 34, 389, 473, 809, 1070
Fsp4HI GCNGC 2 cut(s) 74, 77
FspBI CTAG 3 cut(s) 303, 561, 1308
GlaI GCGC 3 cut(s) 124, 485, 1333
GluI GCNGC 2 cut(s) 74, 77
HaeII RGCGCY 1 cut(s) 126
HaeIII GGCC 2 cut(s) 522, 715
HapII CCGG 2 cut(s) 420, 467
HgaI GACGC 3 cut(s) 49, 68, 200
HhaI GCGC 3 cut(s) 125, 486, 1334
Hin1I GRCGYC 2 cut(s) 60, 211
Hin1II CATG 8 cut(s) 57, 111, 375, 529, 730, 960, 1027, 1227
Hin6I GCGC 3 cut(s) 123, 484, 1332
HinP1I GCGC 3 cut(s) 123, 484, 1332
HincII GTYRAC 2 cut(s) 27, 963
HindII GTYRAC 2 cut(s) 27, 963
HinfI GANTC 4 cut(s) 644, 731, 1063, 1081
HpaI GTTAAC 1 cut(s) 963
HpaII CCGG 2 cut(s) 420, 467
HphI GGTGA 1 cut(s) 197
Hpy166II GTNNAC 6 cut(s) 27, 479, 533, 826, 963, 1014
Hpy188I TCNGA 3 cut(s) 70, 1037, 1138
Hpy188III TCNNGA 4 cut(s) 139, 303, 347, 1208
Hpy8I GTNNAC 6 cut(s) 27, 479, 533, 826, 963, 1014
HpyAV CCTTC 2 cut(s) 75, 288
HpyCH4III ACNGT 5 cut(s) 31, 252, 615, 930, 1262
HpyCH4IV ACGT 3 cut(s) 583, 742, 844
HpyCH4V TGCA 7 cut(s) 146, 404, 506, 999, 1014, 1144, 1323
HpyF10VI GCNNNNNNNGC 5 cut(s) 1020, 1195, 1253, 1262, 1329
HpyF3I CTNAG 3 cut(s) 129, 285, 357
HpySE526I ACGT 3 cut(s) 583, 742, 844
Hsp92I GRCGYC 2 cut(s) 60, 211
Hsp92II CATG 8 cut(s) 57, 111, 375, 529, 730, 960, 1027, 1227
HspAI GCGC 3 cut(s) 123, 484, 1332
KpnI GGTACC 1 cut(s) 568
KspAI GTTAAC 1 cut(s) 963
Kzo9I GATC 4 cut(s) 104, 160, 671, 760
LmnI GCTCC 2 cut(s) 130, 1037
Lsp1109I GCAGC 2 cut(s) 85, 88
LweI GCATC 5 cut(s) 391, 515, 1048, 1198, 1319
MaeI CTAG 3 cut(s) 303, 561, 1308
MaeII ACGT 3 cut(s) 583, 742, 844
MaeIII GTNAC 8 cut(s) 31, 85, 658, 880, 930, 1069, 1111, 1120
MalI GATC 4 cut(s) 106, 162, 673, 762
MboI GATC 4 cut(s) 104, 160, 671, 760
MboII GAAGA 5 cut(s) 268, 335, 666, 1090, 1155
MfeI CAATTG 1 cut(s) 243
MflI RGATCY 1 cut(s) 671
MhlI GDGCHC 1 cut(s) 1016
MluCI AATT 9 cut(s) 243, 363, 413, 663, 773, 837, 1030, 1153, 1299
MlyI GAGTC 2 cut(s) 740, 1057
MmeI TCCRAC 1 cut(s) 674
MnlI CCTC 3 cut(s) 138, 786, 1171
Mph1103I ATGCAT 1 cut(s) 508
MseI TTAA 4 cut(s) 219, 395, 771, 962
MslI CAYNNNNRTG 1 cut(s) 387
MspI CCGG 2 cut(s) 420, 467
MspR9I CCNGG 3 cut(s) 330, 421, 1244
MunI CAATTG 1 cut(s) 243
Mva1269I GAATGC 2 cut(s) 148, 265
MvaI CCWGG 2 cut(s) 330, 1244
MwoI GCNNNNNNNGC 5 cut(s) 1020, 1195, 1253, 1262, 1329
NciI CCSGG 1 cut(s) 421
NcoI CCATGG 2 cut(s) 525, 1223
NdeI CATATG 1 cut(s) 1018
NdeII GATC 4 cut(s) 104, 160, 671, 760
NlaIII CATG 8 cut(s) 57, 111, 375, 529, 730, 960, 1027, 1227
NlaIV GGNNCC 2 cut(s) 523, 566
NmuCI GTSAC 3 cut(s) 31, 1069, 1111
NsiI ATGCAT 1 cut(s) 508
NspI RCATGY 1 cut(s) 1027
PctI GAATGC 2 cut(s) 148, 265
PfeI GAWTC 2 cut(s) 644, 1081
PfoI TCCNGGA 1 cut(s) 419
PkrI GCNGC 2 cut(s) 75, 78
PleI GAGTC 2 cut(s) 739, 1057
PpsI GAGTC 2 cut(s) 739, 1057
Ppu21I YACGTR 1 cut(s) 584
PshAI GACNNNNGTC 1 cut(s) 1277
Psp6I CCWGG 2 cut(s) 328, 1242
PspGI CCWGG 2 cut(s) 328, 1242
PspN4I GGNNCC 2 cut(s) 523, 566
PspPI GGNCC 4 cut(s) 248, 521, 713, 988
PstI CTGCAG 1 cut(s) 1001
PstNI CAGNNNCTG 2 cut(s) 82, 1200
PsuI RGATCY 1 cut(s) 671
RsaI GTAC 1 cut(s) 566
RsaNI GTAC 1 cut(s) 565
RseI CAYNNNNRTG 1 cut(s) 387
SaqAI TTAA 4 cut(s) 219, 395, 771, 962
SatI GCNGC 2 cut(s) 74, 77
Sau3AI GATC 4 cut(s) 104, 160, 671, 760
Sau96I GGNCC 4 cut(s) 248, 521, 713, 988
SchI GAGTC 2 cut(s) 740, 1057
ScrFI CCNGG 3 cut(s) 330, 421, 1244
SduI GDGCHC 1 cut(s) 1016
SfaNI GCATC 5 cut(s) 391, 515, 1048, 1198, 1319
SfcI CTRYAG 2 cut(s) 997, 1266
SinI GGWCC 2 cut(s) 248, 988
SmiI ATTTAAAT 1 cut(s) 772
SmiMI CAYNNNNRTG 1 cut(s) 387
SnaBI TACGTA 1 cut(s) 584
Sse9I AATT 9 cut(s) 243, 363, 413, 663, 773, 837, 1030, 1153, 1299
SsiI CCGC 1 cut(s) 1336
SspMI CTAG 3 cut(s) 303, 561, 1308
StyD4I CCNGG 3 cut(s) 328, 419, 1242
StyI CCWWGG 2 cut(s) 525, 1223
SwaI ATTTAAAT 1 cut(s) 772
TaaI ACNGT 5 cut(s) 31, 252, 615, 930, 1262
TaiI ACGT 3 cut(s) 586, 745, 847
TasI AATT 9 cut(s) 243, 363, 413, 663, 773, 837, 1030, 1153, 1299
TfiI GAWTC 2 cut(s) 644, 1081
Tru1I TTAA 4 cut(s) 219, 395, 771, 962
Tru9I TTAA 4 cut(s) 219, 395, 771, 962
TscAI CASTG 5 cut(s) 36, 620, 715, 865, 1205
TseFI GTSAC 3 cut(s) 31, 1069, 1111
TseI GCWGC 2 cut(s) 73, 76
Tsp45I GTSAC 3 cut(s) 31, 1069, 1111
TspDTI ATGAA 3 cut(s) 163, 311, 799
TspGWI ACGGA 2 cut(s) 510, 1116
TspRI CASTG 5 cut(s) 36, 620, 715, 865, 1205
VneI GTGCAC 1 cut(s) 1012
VpaK11BI GGWCC 2 cut(s) 248, 988
XagI CCTNNNNNAGG 1 cut(s) 1113
XapI RAATTY 2 cut(s) 413, 1153
XbaI TCTAGA 1 cut(s) 302
XceI RCATGY 1 cut(s) 1027
XmiI GTMKAC 1 cut(s) 532
XspI CTAG 3 cut(s) 303, 561, 1308
Zsp2I ATGCAT 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.