Rroxscaffold_3G00241790

PhoD-like phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0013277
Physical Location & Seq
Forward (+)
34022206 .. 34025773
3568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00241790.1

Sequence Viewer

Length: 1380 bp
ATGGGGTTAGGCTTGAAGTGGTGGTGGTGGTGGTGGTTGACGGTGACGGCGGTTGGAGTAGGAGTGGTGGTTACTTCTGAGACTAAGCATGACAATCTGGTTAGTCGTATTGCTTTTGGATCATGTGCCAACCAATCTGCTCCCCAGCCCATATGGGATGCAATCATAAGGTTTGATCCCCAAGTTTTCATTTGGCTGGGTGATAACATTTATGGAGACATCAGGTTGCCTAATAAGCTTTTTGGGAGGAAAAGAAATATTGGTCCATGGAAGAATACTGAAAGGTTTGTTCCTGCTAGCGAGCAGGAAATGAAGTCCAAGTATGAGGAAGCCAAGTCTAATCCTGGTTATTCTCGTCTTCGACAGAAGACTAAGGTCATAGGCACATGGGATGACCATGATTATGGATTAAACGATGCAGGAAAAGAATTTGCTGGGAAAGTAATTAATCAAAGGCTTATGCTTGATTTCTTAGATGAGCCTCAAGATAGTCCACGGCGCAAACAAGCTGGTGTATATGCATCTTATACATTTGGCCCCACAGGTAGACAAATCAAGGTTATCCTATTAGATACTAGATACCACCGAGATCCTCTACGTAGTGACGGAAGTATTTTGGGGAGTTTACAGTGGACTTGGTTAGAGAAGGAGCTGTATGGTTCACCAACAGCCGTTACTATTATTGGGTCATCTATACAGGTAATATCAAATCTCTCAGCAACAACTGGACCATTTTTCTACATGGAATCATGGGGACGTTTTCCAAAAGAGAGAGATCGATTATTTAAACTGCTGGCAGATAGTAAGAGGGGTGGAGTGTTTTTCATTAGTGGAGATGTTCATTTTGGAGAAATTACAAGATATGATTGTGCCACTGGATATCCATTGTATGATGTAACTGCAAGCGGAATCACCCAAGCAGTTGAAAAGGTAGTTCCCACGCCGCTGCATTTCTTAGTGAGATTTCTCGCATGGTTTACTCCTGCCACCTTGAGGGTAATGGATGGAAACTGCAGACGCAAGTCATGCACATATGGCATGCCTAATTTTGGAGCAATCGAGATAGACTGGGATGCTACTCCTGTGACATTGAAAATTCAAGTGAGGGATACGGATGGTGATCCTGTGGTGGGTGTAACTGCACCATTATCGGAATTGCAAGCAAGAAATTTCAACTATGTGACTAGCAATAAAGTAGGAAAGCACCAAAGGCACTGCTATCTTGAAATCAATCAACCAGGGGATTGTCAGATATCGCTTGGCTATTTTAGCTTATTCTGCTCTATCTGTATTGGTCCTCGCTATGATGGGCCTGATTTGGCTTGCTACATTATGTTGCTGTCGATGTTCCCGCAAGAAAAAGCGCGAGTGACTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00790 ko01100 ko02020 map00790 map01100 map02020
Pfam Domains
Protein Families
PhoD

Protein Analysis

459

Amino Acids

52.0

Weight (kDa)

8.58

Isoelectric Point (pI)

38.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PhoD PF09423 38 - 291 1.6e-21 PhoD-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013277)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42370 AT5G42370
fragaria_vesca FvH4_5g26760 FvH4_5g26760 FvH4_5g26760 FvH4_5g26760
prunus_persica Prupe.5G000900_v2.0.a1
pyrus_communis pycom16g26350
rosa_chinensis RchiOBHm_Chr7g0217631
rosa_laevigata RLG00000002455
rosa_multiflora Rmu_sc0015965.1_g000001
rosa_roxburghii Rroxscaffold_3G00241790
rosa_rugosa Rorug07G0170500
rosa_samantha Rh7AG310600 Rh7BG301900 Rh7CG329600 Rh7DG310700
rosa_wichuraiana Rw7G026370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 547
AccII CGCG 1 cut(s) 1366
AciI CCGC 4 cut(s) 50, 906, 944, 1352
AclWI GGATC 4 cut(s) 127, 170, 584, 1115
AcsI RAATTY 3 cut(s) 428, 1095, 1168
AfiI CCNNNNNNNGG 3 cut(s) 993, 1049, 1130
AgsI TTSAA 6 cut(s) 16, 926, 1093, 1100, 1174, 1226
AjnI CCWGG 2 cut(s) 343, 1237
AluBI AGCT 4 cut(s) 238, 509, 652, 1272
AluI AGCT 4 cut(s) 238, 509, 652, 1272
Alw26I GTCTC 2 cut(s) 74, 210
AlwI GGATC 4 cut(s) 127, 170, 584, 1115
AoxI GGCC 2 cut(s) 535, 1310
ApeKI GCWGC 1 cut(s) 946
ApoI RAATTY 3 cut(s) 428, 1095, 1168
AseI ATTAAT 1 cut(s) 447
AspLEI GCGC 2 cut(s) 501, 1366
AspS9I GGNCC 5 cut(s) 263, 536, 728, 1295, 1310
AsuHPI GGTGA 5 cut(s) 55, 212, 654, 904, 1130
AsuNHI GCTAGC 1 cut(s) 296
AvaII GGWCC 3 cut(s) 263, 728, 1295
BbsI GAAGAC 2 cut(s) 350, 374
BbvI GCAGC 1 cut(s) 933
BccI CCATC 3 cut(s) 998, 1109, 1301
BceAI ACGGC 3 cut(s) 63, 512, 656
BcgI CGANNNNNNTGC 2 cut(s) 1131, 1165
BciT130I CCWGG 2 cut(s) 345, 1239
BciVI GTATCC 1 cut(s) 1102
BcoDI GTCTC 2 cut(s) 74, 210
BfaI CTAG 3 cut(s) 297, 576, 1185
BfmI CTRYAG 1 cut(s) 1012
BfuI GTATCC 1 cut(s) 1102
BisI GCNGC 2 cut(s) 944, 947
BlsI GCNGC 2 cut(s) 945, 948
Bme1390I CCNGG 2 cut(s) 345, 1239
Bme18I GGWCC 3 cut(s) 263, 728, 1295
BmgT120I GGNCC 5 cut(s) 263, 536, 728, 1295, 1310
BmiI GGNNCC 1 cut(s) 538
BmrFI CCNGG 2 cut(s) 345, 1239
BmrI ACTGGG 1 cut(s) 1078
BmsI GCATC 4 cut(s) 148, 406, 530, 1063
BmtI GCTAGC 1 cut(s) 300
BmuI ACTGGG 1 cut(s) 1078
BoxI GACNNNNGTC 2 cut(s) 374, 1021
BpiI GAAGAC 2 cut(s) 350, 374
BpuEI CTTGAG 2 cut(s) 468, 1012
Bsa29I ATCGAT 1 cut(s) 778
BsaAI YACGTR 1 cut(s) 599
BsaBI GATNNNNATC 1 cut(s) 1119
BsaJI CCNNGG 3 cut(s) 266, 494, 1238
BsaXI ACNNNNNCTCC 4 cut(s) 48, 54, 78, 84
Bsc4I CCNNNNNNNGG 3 cut(s) 993, 1049, 1130
Bse1I ACTGG 3 cut(s) 730, 880, 1073
Bse8I GATNNNNATC 1 cut(s) 1119
BseBI CCWGG 2 cut(s) 345, 1239
BseCI ATCGAT 1 cut(s) 778
BseDI CCNNGG 3 cut(s) 266, 494, 1238
BseGI GGATG 5 cut(s) 163, 397, 1009, 1078, 1120
BseJI GATNNNNATC 1 cut(s) 1119
BseLI CCNNNNNNNGG 3 cut(s) 993, 1049, 1130
BseMII CTCAG 2 cut(s) 69, 729
BseNI ACTGG 3 cut(s) 730, 880, 1073
BseXI GCAGC 1 cut(s) 933
BseYI CCCAGC 3 cut(s) 144, 196, 434
BsgI GTGCAG 1 cut(s) 1125
Bsh1236I CGCG 1 cut(s) 1366
BshFI GGCC 2 cut(s) 537, 1312
BshVI ATCGAT 1 cut(s) 778
BslFI GGGAC 1 cut(s) 768
BslI CCNNNNNNNGG 3 cut(s) 993, 1049, 1130
BsmAI GTCTC 2 cut(s) 74, 210
BsmFI GGGAC 1 cut(s) 768
BsnI GGCC 2 cut(s) 537, 1312
Bsp143I GATC 5 cut(s) 119, 175, 589, 775, 1120
Bsp19I CCATGG 1 cut(s) 266
BspACI CCGC 4 cut(s) 50, 906, 944, 1352
BspANI GGCC 2 cut(s) 537, 1312
BspCNI CTCAG 2 cut(s) 70, 728
BspDI ATCGAT 1 cut(s) 778
BspFNI CGCG 1 cut(s) 1366
BspLI GGNNCC 1 cut(s) 538
BspMAI CTGCAG 1 cut(s) 1016
BspOI GCTAGC 1 cut(s) 300
BspPI GGATC 4 cut(s) 127, 170, 584, 1115
BsrI ACTGG 3 cut(s) 730, 880, 1073
BssECI CCNNGG 3 cut(s) 266, 494, 1238
BssMI GATC 5 cut(s) 119, 175, 589, 775, 1120
BssT1I CCWWGG 1 cut(s) 266
Bst2UI CCWGG 2 cut(s) 345, 1239
Bst4CI ACNGT 2 cut(s) 43, 630
BstAPI GCANNNNNTGC 1 cut(s) 1026
BstBAI YACGTR 1 cut(s) 599
BstC8I GCNNGC 7 cut(s) 298, 302, 795, 904, 1040, 1161, 1324
BstDEI CTNAG 6 cut(s) 78, 84, 372, 472, 715, 955
BstDSI CCRYGG 2 cut(s) 266, 494
BstF5I GGATG 5 cut(s) 163, 397, 1009, 1078, 1120
BstFNI CGCG 1 cut(s) 1366
BstHHI GCGC 2 cut(s) 501, 1366
BstKTI GATC 5 cut(s) 122, 178, 592, 778, 1123
BstMAI GTCTC 2 cut(s) 74, 210
BstMBI GATC 5 cut(s) 119, 175, 589, 775, 1120
BstMWI GCNNNNNNNGC 6 cut(s) 235, 1026, 1035, 1210, 1269, 1278
BstNI CCWGG 2 cut(s) 345, 1239
BstNSI RCATGY 1 cut(s) 1042
BstPAI GACNNNNGTC 2 cut(s) 374, 1021
BstSCI CCNGG 2 cut(s) 343, 1237
BstSFI CTRYAG 1 cut(s) 1012
BstSNI TACGTA 1 cut(s) 599
BstUI CGCG 1 cut(s) 1366
BstV1I GCAGC 1 cut(s) 933
BstV2I GAAGAC 2 cut(s) 350, 374
BstX2I RGATCY 1 cut(s) 589
BstXI CCANNNNNNTGG 1 cut(s) 404
BstYI RGATCY 1 cut(s) 589
Bsu15I ATCGAT 1 cut(s) 778
BsuI GTATCC 1 cut(s) 1102
BsuRI GGCC 2 cut(s) 537, 1312
BsuTUI ATCGAT 1 cut(s) 778
BtgI CCRYGG 2 cut(s) 266, 494
BtsCI GGATG 5 cut(s) 163, 397, 1009, 1078, 1120
BtsI GCAGTG 1 cut(s) 1213
BtsIMutI CAGTG 3 cut(s) 635, 873, 1213
Cac8I GCNNGC 7 cut(s) 298, 302, 795, 904, 1040, 1161, 1324
CfoI GCGC 2 cut(s) 501, 1366
Cfr13I GGNCC 5 cut(s) 263, 536, 728, 1295, 1310
ClaI ATCGAT 1 cut(s) 778
CseI GACGC 1 cut(s) 1026
DdeI CTNAG 6 cut(s) 78, 84, 372, 472, 715, 955
DpnI GATC 5 cut(s) 121, 177, 591, 777, 1122
DpnII GATC 5 cut(s) 119, 175, 589, 775, 1120
DraI TTTAAA 1 cut(s) 787
Eco105I TACGTA 1 cut(s) 599
Eco130I CCWWGG 1 cut(s) 266
Eco32I GATATC 2 cut(s) 881, 1254
Eco47I GGWCC 3 cut(s) 263, 728, 1295
EcoRII CCWGG 2 cut(s) 343, 1237
EcoRV GATATC 2 cut(s) 881, 1254
EcoT14I CCWWGG 1 cut(s) 266
EcoT22I ATGCAT 1 cut(s) 523
ErhI CCWWGG 1 cut(s) 266
FaqI GGGAC 1 cut(s) 768
FauI CCCGC 1 cut(s) 1359
FauNDI CATATG 2 cut(s) 152, 1033
FblI GTMKAC 1 cut(s) 547
Fnu4HI GCNGC 2 cut(s) 944, 947
FokI GGATG 5 cut(s) 170, 404, 1016, 1085, 1127
Fsp4HI GCNGC 2 cut(s) 944, 947
FspBI CTAG 3 cut(s) 297, 576, 1185
GlaI GCGC 2 cut(s) 500, 1365
GluI GCNGC 2 cut(s) 944, 947
GsaI CCCAGC 3 cut(s) 148, 200, 438
HaeIII GGCC 2 cut(s) 537, 1312
HgaI GACGC 1 cut(s) 1026
HhaI GCGC 2 cut(s) 501, 1366
Hin6I GCGC 2 cut(s) 499, 1364
HinP1I GCGC 2 cut(s) 499, 1364
HincII GTYRAC 1 cut(s) 39
HindII GTYRAC 1 cut(s) 39
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 2 cut(s) 746, 909
HphI GGTGA 5 cut(s) 55, 212, 654, 904, 1130
Hpy166II GTNNAC 7 cut(s) 39, 494, 548, 626, 633, 662, 978
Hpy188I TCNGA 3 cut(s) 79, 1153, 1251
Hpy188III TCNNGA 3 cut(s) 485, 1060, 1223
Hpy8I GTNNAC 7 cut(s) 39, 494, 548, 626, 633, 662, 978
HpyAV CCTTC 1 cut(s) 640
HpyCH4III ACNGT 2 cut(s) 43, 630
HpyCH4IV ACGT 2 cut(s) 598, 757
HpyCH4V TGCA 9 cut(s) 161, 419, 521, 902, 949, 1014, 1029, 1142, 1159
HpyF10VI GCNNNNNNNGC 6 cut(s) 235, 1026, 1035, 1210, 1269, 1278
HpyF3I CTNAG 6 cut(s) 78, 84, 372, 472, 715, 955
HpySE526I ACGT 2 cut(s) 598, 757
HspAI GCGC 2 cut(s) 499, 1364
Kzo9I GATC 5 cut(s) 119, 175, 589, 775, 1120
LmnI GCTCC 3 cut(s) 145, 649, 1052
Lsp1109I GCAGC 1 cut(s) 933
LweI GCATC 4 cut(s) 148, 406, 530, 1063
MaeI CTAG 3 cut(s) 297, 576, 1185
MaeII ACGT 2 cut(s) 598, 757
MaeIII GTNAC 9 cut(s) 43, 70, 602, 673, 895, 1084, 1135, 1180, 1369
MalI GATC 5 cut(s) 121, 177, 591, 777, 1122
MboI GATC 5 cut(s) 119, 175, 589, 775, 1120
MboII GAAGA 3 cut(s) 283, 350, 379
MflI RGATCY 1 cut(s) 589
MluCI AATT 7 cut(s) 428, 444, 852, 1045, 1095, 1154, 1168
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 8 cut(s) 240, 319, 492, 603, 801, 987, 1098, 1308
Mph1103I ATGCAT 1 cut(s) 523
MseI TTAA 3 cut(s) 410, 447, 786
MslI CAYNNNNRTG 1 cut(s) 402
MspA1I CMGCKG 1 cut(s) 946
MspR9I CCNGG 2 cut(s) 345, 1239
MvaI CCWGG 2 cut(s) 345, 1239
MvnI CGCG 1 cut(s) 1366
MwoI GCNNNNNNNGC 6 cut(s) 235, 1026, 1035, 1210, 1269, 1278
NcoI CCATGG 1 cut(s) 266
NdeI CATATG 2 cut(s) 152, 1033
NdeII GATC 5 cut(s) 119, 175, 589, 775, 1120
NheI GCTAGC 1 cut(s) 296
NlaIV GGNNCC 1 cut(s) 538
NmuCI GTSAC 5 cut(s) 43, 602, 1084, 1180, 1369
NsiI ATGCAT 1 cut(s) 523
NspI RCATGY 1 cut(s) 1042
PaeI GCATGC 1 cut(s) 1042
PfeI GAWTC 2 cut(s) 746, 909
PkrI GCNGC 2 cut(s) 945, 948
Ppu21I YACGTR 1 cut(s) 599
PshAI GACNNNNGTC 2 cut(s) 374, 1021
PshBI ATTAAT 1 cut(s) 447
Psp6I CCWGG 2 cut(s) 343, 1237
PspFI CCCAGC 3 cut(s) 144, 196, 434
PspGI CCWGG 2 cut(s) 343, 1237
PspN4I GGNNCC 1 cut(s) 538
PspPI GGNCC 5 cut(s) 263, 536, 728, 1295, 1310
PstI CTGCAG 1 cut(s) 1016
PsuI RGATCY 1 cut(s) 589
RseI CAYNNNNRTG 1 cut(s) 402
SaqAI TTAA 3 cut(s) 410, 447, 786
SatI GCNGC 2 cut(s) 944, 947
Sau3AI GATC 5 cut(s) 119, 175, 589, 775, 1120
Sau96I GGNCC 5 cut(s) 263, 536, 728, 1295, 1310
ScrFI CCNGG 2 cut(s) 345, 1239
SfaNI GCATC 4 cut(s) 148, 406, 530, 1063
SfcI CTRYAG 1 cut(s) 1012
SinI GGWCC 3 cut(s) 263, 728, 1295
SmiMI CAYNNNNRTG 1 cut(s) 402
SmlI CTYRAG 2 cut(s) 483, 991
SmoI CTYRAG 2 cut(s) 483, 991
SnaBI TACGTA 1 cut(s) 599
SphI GCATGC 1 cut(s) 1042
Sse9I AATT 7 cut(s) 428, 444, 852, 1045, 1095, 1154, 1168
SsiI CCGC 4 cut(s) 50, 906, 944, 1352
SspI AATATT 1 cut(s) 259
SspMI CTAG 3 cut(s) 297, 576, 1185
StyD4I CCNGG 2 cut(s) 343, 1237
StyI CCWWGG 1 cut(s) 266
TaaI ACNGT 2 cut(s) 43, 630
TaiI ACGT 2 cut(s) 601, 760
TaqI TCGA 4 cut(s) 361, 778, 1059, 1343
TasI AATT 7 cut(s) 428, 444, 852, 1045, 1095, 1154, 1168
TauI GCSGC 1 cut(s) 946
TfiI GAWTC 2 cut(s) 746, 909
Tru1I TTAA 3 cut(s) 410, 447, 786
Tru9I TTAA 3 cut(s) 410, 447, 786
TscAI CASTG 3 cut(s) 635, 880, 1220
TseFI GTSAC 5 cut(s) 43, 602, 1084, 1180, 1369
TseI GCWGC 1 cut(s) 946
Tsp45I GTSAC 5 cut(s) 43, 602, 1084, 1180, 1369
TspDTI ATGAA 4 cut(s) 178, 326, 814, 830
TspGWI ACGGA 2 cut(s) 621, 1127
TspRI CASTG 3 cut(s) 635, 880, 1220
VpaK11BI GGWCC 3 cut(s) 263, 728, 1295
VspI ATTAAT 1 cut(s) 447
XapI RAATTY 3 cut(s) 428, 1095, 1168
XceI RCATGY 1 cut(s) 1042
XmiI GTMKAC 1 cut(s) 547
XspI CTAG 3 cut(s) 297, 576, 1185
Zsp2I ATGCAT 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.