RLG00000002455

PhoD-like phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0013277
Physical Location & Seq
Forward (+)
34418335 .. 34421109
2775 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002455

Sequence Viewer

Length: 1371 bp
ATGGGGTTGGGCTTGAAGTGGTGGTGGTGGTGGTGGTTGACGGTGACGGCGGTTGGAGTAGGAGTGGTGGTTACTTCTGAGATTAAGCATGACAATCTGGTTAGTCGTATTGCTTTTGGATCATGTGCCAACCAATCTGCTCCTCAGCCCATATGGGATGCAATCATAAAGTTTGATCCCCAAGTTTTCATTTGGCTGGGTGATAACATTTATGGAGACATCAGGTTGCCTAATAAGCTTTTTGGGAGGAAAAGAAATATTGGTCCATGGAAGAATACTGAAAGGTTTGTTCCTGCTAGTGAGCAGGAAATGAAGTCCAAGTATGAGGAAGCCAAGTCTAATCCTGGTTATTCTCATCTTCGACAGAAGACTAAGGTCATAGGCACATGGGATGACCATGATTATGGATTAAACGATGCAGGAAAAGAATTTGCTGGGAAAGTAACTAATCAAAGGCTTATGCTTGATTTCTTAGATGAGCCTCAAGATAGTCCACGGCGCAAACAAGCTGGTGTATATGCATCTTATACATTTGGCCCCACAGGTAGACAAATCAAGGTTATCCTATTAGATACTAGATACCATCGAGATCCTCTACGTAGTGACGGAACTATTTTGGGGAGTTCACAGTGGACTTGGTTAGAGAAAGAGCTGTATGGTTCACCAACAGCCGTTACTATTATTGGGTCATCTATACAGGTCATATCAAATCTCTCAGCAACAACTGGGCCGTTTTTCTACATGGAATCATGGGGACGTTTTCCAAAAGAGAGAGATCGATTATTTAATCTGCTGGCAGATAGTAAGAGAGGTGGAGTGTTTTTCATTAGTGGAGATGTTCATTTTGGAGAAATTACAAGATATGATTGTGCCACTGGATATCCATTGTATGATGTAACTGCAAGCGGAATCACTCAAGCAGTTGAAAAGGTAGTTCCAATGCCGCTGCATTTCTTAGTGAAATTTCTGGCATGGTTTACTCCTGCCACCTTGAGAGTAATGGATGGAAACTGCAGACGCAAGTCATGCACATATGGCATGCCTAATTTTGGAGCAATCGAGATAGACTGGTATGCAACTCCCGTGACATTGAAAATTCAAGTAAGGGACACAGATGGCGATCCTGTGGTAGATGTAACTGCACCATTATCGGAATTGCAAGCAAGAAATTTCAACTATATGACTAGCAATAAAGCAGGAAAGCACCAAAGGCACTGCCATCTTGAAATCAATCAACCAGGGTTTGTCAGATATCGCTTGGCTACTTTAGCTTATTGTTCTCTGTCTGTATTGGTCCTCACTATGATGGGTCTGATCTGGCTTGCTACATTATGTTGCTGTCGATGTTCCCGCAAGAAAAAGCGCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00790 ko01100 ko02020 map00790 map01100 map02020
Pfam Domains
Protein Families
PhoD

Protein Analysis

457

Amino Acids

51.83

Weight (kDa)

9.13

Isoelectric Point (pI)

40.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PhoD PF09423 38 - 290 8e-22 PhoD-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013277)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42370 AT5G42370
fragaria_vesca FvH4_5g26760 FvH4_5g26760 FvH4_5g26760 FvH4_5g26760
prunus_persica Prupe.5G000900_v2.0.a1
pyrus_communis pycom16g26350
rosa_chinensis RchiOBHm_Chr7g0217631
rosa_laevigata RLG00000002455
rosa_multiflora Rmu_sc0015965.1_g000001
rosa_roxburghii Rroxscaffold_3G00241790
rosa_rugosa Rorug07G0170500
rosa_samantha Rh7AG310600 Rh7BG301900 Rh7CG329600 Rh7DG310700
rosa_wichuraiana Rw7G026370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 547
AccII CGCG 1 cut(s) 1365
AciI CCGC 4 cut(s) 50, 906, 944, 1351
AclWI GGATC 4 cut(s) 127, 170, 584, 1115
AcsI RAATTY 4 cut(s) 428, 962, 1095, 1168
AfiI CCNNNNNNNGG 1 cut(s) 1049
AgsI TTSAA 6 cut(s) 16, 926, 1093, 1100, 1174, 1226
AjnI CCWGG 2 cut(s) 343, 1237
AluBI AGCT 4 cut(s) 238, 509, 652, 1271
AluI AGCT 4 cut(s) 238, 509, 652, 1271
Alw26I GTCTC 1 cut(s) 210
AlwI GGATC 4 cut(s) 127, 170, 584, 1115
AoxI GGCC 2 cut(s) 535, 728
ApeKI GCWGC 1 cut(s) 946
ApoI RAATTY 4 cut(s) 428, 962, 1095, 1168
AspLEI GCGC 2 cut(s) 501, 1365
AspS9I GGNCC 4 cut(s) 263, 536, 728, 1294
AsuHPI GGTGA 3 cut(s) 55, 212, 654
AvaII GGWCC 2 cut(s) 263, 1294
BbsI GAAGAC 1 cut(s) 374
BbvCI CCTCAGC 1 cut(s) 144
BbvI GCAGC 1 cut(s) 933
BccI CCATC 5 cut(s) 591, 998, 1109, 1227, 1300
BceAI ACGGC 4 cut(s) 63, 512, 656, 715
BcgI CGANNNNNNTGC 2 cut(s) 1131, 1165
BciT130I CCWGG 2 cut(s) 345, 1239
BcoDI GTCTC 1 cut(s) 210
BfaI CTAG 3 cut(s) 297, 576, 1185
BfmI CTRYAG 1 cut(s) 1012
BisI GCNGC 2 cut(s) 944, 947
BlsI GCNGC 2 cut(s) 945, 948
Bme1390I CCNGG 2 cut(s) 345, 1239
Bme18I GGWCC 2 cut(s) 263, 1294
BmgT120I GGNCC 4 cut(s) 263, 536, 728, 1294
BmiI GGNNCC 1 cut(s) 538
BmrFI CCNGG 2 cut(s) 345, 1239
BmrI ACTGGG 1 cut(s) 735
BmsI GCATC 3 cut(s) 148, 406, 530
BmuI ACTGGG 1 cut(s) 735
BoxI GACNNNNGTC 2 cut(s) 374, 1021
BpiI GAAGAC 1 cut(s) 374
Bpu10I CCTNAGC 1 cut(s) 144
BpuEI CTTGAG 3 cut(s) 468, 900, 1012
Bsa29I ATCGAT 1 cut(s) 778
BsaAI YACGTR 1 cut(s) 599
BsaBI GATNNNNATC 1 cut(s) 1119
BsaJI CCNNGG 3 cut(s) 266, 494, 1238
BsaXI ACNNNNNCTCC 4 cut(s) 48, 54, 78, 84
Bsc4I CCNNNNNNNGG 1 cut(s) 1049
Bse1I ACTGG 3 cut(s) 730, 880, 1073
Bse8I GATNNNNATC 1 cut(s) 1119
BseBI CCWGG 2 cut(s) 345, 1239
BseCI ATCGAT 1 cut(s) 778
BseDI CCNNGG 3 cut(s) 266, 494, 1238
BseGI GGATG 3 cut(s) 163, 397, 1009
BseJI GATNNNNATC 1 cut(s) 1119
BseLI CCNNNNNNNGG 1 cut(s) 1049
BseMII CTCAG 3 cut(s) 69, 158, 729
BseNI ACTGG 3 cut(s) 730, 880, 1073
BseRI GAGGAG 1 cut(s) 132
BseXI GCAGC 1 cut(s) 933
BseYI CCCAGC 2 cut(s) 196, 434
BsgI GTGCAG 1 cut(s) 1125
Bsh1236I CGCG 1 cut(s) 1365
BshFI GGCC 2 cut(s) 537, 730
BshVI ATCGAT 1 cut(s) 778
BslFI GGGAC 2 cut(s) 768, 1121
BslI CCNNNNNNNGG 1 cut(s) 1049
BsmAI GTCTC 1 cut(s) 210
BsmFI GGGAC 2 cut(s) 768, 1121
BsnI GGCC 2 cut(s) 537, 730
Bsp143I GATC 6 cut(s) 119, 175, 589, 775, 1120, 1314
Bsp19I CCATGG 1 cut(s) 266
BspACI CCGC 4 cut(s) 50, 906, 944, 1351
BspANI GGCC 2 cut(s) 537, 730
BspCNI CTCAG 3 cut(s) 70, 157, 728
BspDI ATCGAT 1 cut(s) 778
BspFNI CGCG 1 cut(s) 1365
BspLI GGNNCC 1 cut(s) 538
BspMAI CTGCAG 1 cut(s) 1016
BspPI GGATC 4 cut(s) 127, 170, 584, 1115
BsrI ACTGG 3 cut(s) 730, 880, 1073
BssECI CCNNGG 3 cut(s) 266, 494, 1238
BssMI GATC 6 cut(s) 119, 175, 589, 775, 1120, 1314
BssT1I CCWWGG 1 cut(s) 266
Bst2UI CCWGG 2 cut(s) 345, 1239
Bst4CI ACNGT 2 cut(s) 43, 630
BstAPI GCANNNNNTGC 1 cut(s) 1026
BstBAI YACGTR 1 cut(s) 599
BstC8I GCNNGC 5 cut(s) 795, 904, 1040, 1161, 1323
BstDEI CTNAG 6 cut(s) 78, 144, 372, 472, 715, 955
BstDSI CCRYGG 2 cut(s) 266, 494
BstF5I GGATG 3 cut(s) 163, 397, 1009
BstFNI CGCG 1 cut(s) 1365
BstHHI GCGC 2 cut(s) 501, 1365
BstKTI GATC 6 cut(s) 122, 178, 592, 778, 1123, 1317
BstMAI GTCTC 1 cut(s) 210
BstMBI GATC 6 cut(s) 119, 175, 589, 775, 1120, 1314
BstMWI GCNNNNNNNGC 5 cut(s) 235, 1026, 1035, 1210, 1268
BstNI CCWGG 2 cut(s) 345, 1239
BstNSI RCATGY 1 cut(s) 1042
BstPAI GACNNNNGTC 2 cut(s) 374, 1021
BstSCI CCNGG 2 cut(s) 343, 1237
BstSFI CTRYAG 1 cut(s) 1012
BstSNI TACGTA 1 cut(s) 599
BstUI CGCG 1 cut(s) 1365
BstV1I GCAGC 1 cut(s) 933
BstV2I GAAGAC 1 cut(s) 374
BstX2I RGATCY 1 cut(s) 589
BstXI CCANNNNNNTGG 1 cut(s) 404
BstYI RGATCY 1 cut(s) 589
Bsu15I ATCGAT 1 cut(s) 778
BsuRI GGCC 2 cut(s) 537, 730
BsuTUI ATCGAT 1 cut(s) 778
BtgI CCRYGG 2 cut(s) 266, 494
BtsCI GGATG 3 cut(s) 163, 397, 1009
BtsI GCAGTG 1 cut(s) 1213
BtsIMutI CAGTG 3 cut(s) 635, 873, 1213
Cac8I GCNNGC 5 cut(s) 795, 904, 1040, 1161, 1323
CfoI GCGC 2 cut(s) 501, 1365
Cfr13I GGNCC 4 cut(s) 263, 536, 728, 1294
ClaI ATCGAT 1 cut(s) 778
CseI GACGC 1 cut(s) 1026
DdeI CTNAG 6 cut(s) 78, 144, 372, 472, 715, 955
DpnI GATC 6 cut(s) 121, 177, 591, 777, 1122, 1316
DpnII GATC 6 cut(s) 119, 175, 589, 775, 1120, 1314
Eco105I TACGTA 1 cut(s) 599
Eco130I CCWWGG 1 cut(s) 266
Eco32I GATATC 2 cut(s) 881, 1253
Eco47I GGWCC 2 cut(s) 263, 1294
EcoRII CCWGG 2 cut(s) 343, 1237
EcoRV GATATC 2 cut(s) 881, 1253
EcoT14I CCWWGG 1 cut(s) 266
EcoT22I ATGCAT 1 cut(s) 523
ErhI CCWWGG 1 cut(s) 266
FaqI GGGAC 2 cut(s) 768, 1121
FauI CCCGC 1 cut(s) 1358
FauNDI CATATG 2 cut(s) 152, 1033
FblI GTMKAC 1 cut(s) 547
Fnu4HI GCNGC 2 cut(s) 944, 947
FokI GGATG 3 cut(s) 170, 404, 1016
Fsp4HI GCNGC 2 cut(s) 944, 947
FspBI CTAG 3 cut(s) 297, 576, 1185
GlaI GCGC 2 cut(s) 500, 1364
GluI GCNGC 2 cut(s) 944, 947
GsaI CCCAGC 2 cut(s) 200, 438
HaeIII GGCC 2 cut(s) 537, 730
HgaI GACGC 1 cut(s) 1026
HhaI GCGC 2 cut(s) 501, 1365
Hin6I GCGC 2 cut(s) 499, 1363
HinP1I GCGC 2 cut(s) 499, 1363
HincII GTYRAC 1 cut(s) 39
HindII GTYRAC 1 cut(s) 39
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 2 cut(s) 746, 909
HphI GGTGA 3 cut(s) 55, 212, 654
Hpy166II GTNNAC 7 cut(s) 39, 494, 548, 626, 633, 662, 978
Hpy188I TCNGA 4 cut(s) 79, 1153, 1250, 1314
Hpy188III TCNNGA 4 cut(s) 485, 587, 1060, 1223
Hpy8I GTNNAC 7 cut(s) 39, 494, 548, 626, 633, 662, 978
HpyCH4III ACNGT 2 cut(s) 43, 630
HpyCH4IV ACGT 2 cut(s) 598, 757
HpyF10VI GCNNNNNNNGC 5 cut(s) 235, 1026, 1035, 1210, 1268
HpyF3I CTNAG 6 cut(s) 78, 144, 372, 472, 715, 955
HpySE526I ACGT 2 cut(s) 598, 757
HspAI GCGC 2 cut(s) 499, 1363
Kzo9I GATC 6 cut(s) 119, 175, 589, 775, 1120, 1314
LmnI GCTCC 2 cut(s) 145, 1052
Lsp1109I GCAGC 1 cut(s) 933
LweI GCATC 3 cut(s) 148, 406, 530
MaeI CTAG 3 cut(s) 297, 576, 1185
MaeII ACGT 2 cut(s) 598, 757
MaeIII GTNAC 8 cut(s) 43, 70, 442, 602, 673, 895, 1084, 1135
MalI GATC 6 cut(s) 121, 177, 591, 777, 1122, 1316
MboI GATC 6 cut(s) 119, 175, 589, 775, 1120, 1314
MboII GAAGA 3 cut(s) 283, 350, 379
MflI RGATCY 1 cut(s) 589
MluCI AATT 7 cut(s) 428, 852, 962, 1045, 1095, 1154, 1168
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 7 cut(s) 153, 240, 319, 492, 603, 803, 1307
Mph1103I ATGCAT 1 cut(s) 523
MseI TTAA 3 cut(s) 84, 410, 786
MslI CAYNNNNRTG 2 cut(s) 402, 1304
MspA1I CMGCKG 1 cut(s) 946
MspR9I CCNGG 2 cut(s) 345, 1239
MvaI CCWGG 2 cut(s) 345, 1239
MvnI CGCG 1 cut(s) 1365
MwoI GCNNNNNNNGC 5 cut(s) 235, 1026, 1035, 1210, 1268
NcoI CCATGG 1 cut(s) 266
NdeI CATATG 2 cut(s) 152, 1033
NdeII GATC 6 cut(s) 119, 175, 589, 775, 1120, 1314
NlaIV GGNNCC 1 cut(s) 538
NmuCI GTSAC 3 cut(s) 43, 602, 1084
NsiI ATGCAT 1 cut(s) 523
NspI RCATGY 1 cut(s) 1042
PaeI GCATGC 1 cut(s) 1042
PfeI GAWTC 2 cut(s) 746, 909
PkrI GCNGC 2 cut(s) 945, 948
Ppu21I YACGTR 1 cut(s) 599
PshAI GACNNNNGTC 2 cut(s) 374, 1021
Psp6I CCWGG 2 cut(s) 343, 1237
PspFI CCCAGC 2 cut(s) 196, 434
PspGI CCWGG 2 cut(s) 343, 1237
PspN4I GGNNCC 1 cut(s) 538
PspPI GGNCC 4 cut(s) 263, 536, 728, 1294
PstI CTGCAG 1 cut(s) 1016
PsuI RGATCY 1 cut(s) 589
RseI CAYNNNNRTG 2 cut(s) 402, 1304
SaqAI TTAA 3 cut(s) 84, 410, 786
SatI GCNGC 2 cut(s) 944, 947
Sau3AI GATC 6 cut(s) 119, 175, 589, 775, 1120, 1314
Sau96I GGNCC 4 cut(s) 263, 536, 728, 1294
ScrFI CCNGG 2 cut(s) 345, 1239
SfaNI GCATC 3 cut(s) 148, 406, 530
SfcI CTRYAG 1 cut(s) 1012
SinI GGWCC 2 cut(s) 263, 1294
SmiMI CAYNNNNRTG 2 cut(s) 402, 1304
SmlI CTYRAG 3 cut(s) 483, 915, 991
SmoI CTYRAG 3 cut(s) 483, 915, 991
SnaBI TACGTA 1 cut(s) 599
SphI GCATGC 1 cut(s) 1042
Sse9I AATT 7 cut(s) 428, 852, 962, 1045, 1095, 1154, 1168
SsiI CCGC 4 cut(s) 50, 906, 944, 1351
SspI AATATT 1 cut(s) 259
SspMI CTAG 3 cut(s) 297, 576, 1185
StyD4I CCNGG 2 cut(s) 343, 1237
StyI CCWWGG 1 cut(s) 266
TaaI ACNGT 2 cut(s) 43, 630
TaiI ACGT 2 cut(s) 601, 760
TaqI TCGA 5 cut(s) 361, 586, 778, 1059, 1342
TasI AATT 7 cut(s) 428, 852, 962, 1045, 1095, 1154, 1168
TauI GCSGC 1 cut(s) 946
TfiI GAWTC 2 cut(s) 746, 909
Tru1I TTAA 3 cut(s) 84, 410, 786
Tru9I TTAA 3 cut(s) 84, 410, 786
TscAI CASTG 3 cut(s) 635, 880, 1220
TseFI GTSAC 3 cut(s) 43, 602, 1084
TseI GCWGC 1 cut(s) 946
Tsp45I GTSAC 3 cut(s) 43, 602, 1084
TspDTI ATGAA 4 cut(s) 178, 326, 814, 830
TspGWI ACGGA 1 cut(s) 621
TspRI CASTG 3 cut(s) 635, 880, 1220
VpaK11BI GGWCC 2 cut(s) 263, 1294
XapI RAATTY 4 cut(s) 428, 962, 1095, 1168
XceI RCATGY 1 cut(s) 1042
XmiI GTMKAC 1 cut(s) 547
XspI CTAG 3 cut(s) 297, 576, 1185
Zsp2I ATGCAT 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.