Rh7DG310700

PhoD-like phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0013277
Physical Location & Seq
Reverse (-)
36332556 .. 36336320
3765 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG310700.1

Sequence Viewer

Length: 1368 bp
ATGGGGTTGGGCTTGAAGTGGTGGTGGTGGTGGTTGACGGTGACGGCGGTTGGAGTAGGAGTGGTGGTTACTTCTGAGACTAAGCATGACAATCTGGTCAGTCGTATTGCTTTTGGATCATGTGCCAACCAATCTGCTCCTCAGCCCATATGGGATGCAATCATAAAGTTTGATCCCCAAGTTTTCATTTGGCTGGGTGATAACATTTATGGAGACATCAGGTTGCCTAATAAGCTTTTTGGGAGGAAAAGAAATATTGGTCCATGGAAGAATACTGAAAGGTTTGTTCCTGCTAGCGAGCAGGAAATGAAGTCCAAGTATGAGGAAGCCAAGTCTAATCCTGGTTATTCTCGTCTTCGACAGAAGACTAAGGTCATAGGCACATGGGATGACCATGATTATGGATTAAACGATGCAGGAAAAGAATTTGCTGGGAAAGTTACTAATCAAAGGCTTATGCTTGATTTCTTAGATGAGCCTCAAGATAGTCCACGGCGCAAACAAGCTGGTGTATATGCATCTTATACATTTGGCCCCACAGGTAGACAAATCAAGGTTATCCTATTAGATACTAGATACCAGCGAGATCCTCTAAATAGTGACGGAACTATTTTGGGGAGTTCACAGTGGACTTGGTTAGAGAAAGAGCTGTATAGTTCACCAACAGCAGTTACTATTATTGGGTCATCTATACAGGTCATATCAAATCTCTCAGCAACAACTGGGCCGTTTTTCTACATGGAATCATGGGGACGTTTTCCAAAAGAGAGAGATCGATTATTTAAACTGCTGGCAGATAGTAAGAGGGGTGGAGTGTTTTTCATTAGTGGAGATGTTCATTTTGGAGAAATTACAAGATATGATTGTGCCACTGGATATCCATTGTATGATGTAACTGCAAGCGGAATCACCCAAGCAGTTGAAAAGGTAGTTCCAATGCCGCTGCATTTCCTAGTGAGATTTCTGGCATGGTTGACTCCTGCCACCTTGAGAGTAATGGATGGAAACTGCAGACGCAGGTCATGCACATATGGCATGCCAAATTTTGGAGCAATTGAGATAGACTGGCATGCAACTCCTGTGACATTGAAAATTCAAGTGAGGGATACGGATGGCGATCCTGTGGTAGGTGTTACTGCACCATTATCGGAATTGCAAGCAAGAAATTTCAACTATGTGACTAGCAATAAAGCAGGAAAGCACCAAAGGCACTGCCATCTTGAAATCAATCAACCAGGGATTGTCAGATATCGCTTGGCTATTTTAGCTTATTGTTCTCTATCCGGATTGGTCCTCGCTATGATGGGTCTGATCTGGCTTGCTACATTATGTTGCTGTCGATGTTCCCGCAAGAAAAAGCGCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00790 ko01100 ko02020 map00790 map01100 map02020
Pfam Domains
Protein Families
PhoD

Protein Analysis

455

Amino Acids

51.46

Weight (kDa)

9.26

Isoelectric Point (pI)

40.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PhoD PF09423 37 - 289 2e-22 PhoD-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013277)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42370 AT5G42370
fragaria_vesca FvH4_5g26760 FvH4_5g26760 FvH4_5g26760 FvH4_5g26760
prunus_persica Prupe.5G000900_v2.0.a1
pyrus_communis pycom16g26350
rosa_chinensis RchiOBHm_Chr7g0217631
rosa_laevigata RLG00000002455
rosa_multiflora Rmu_sc0015965.1_g000001
rosa_roxburghii Rroxscaffold_3G00241790
rosa_rugosa Rorug07G0170500
rosa_samantha Rh7AG310600 Rh7BG301900 Rh7CG329600 Rh7DG310700
rosa_wichuraiana Rw7G026370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 95
Acc36I ACCTGC 1 cut(s) 1008
AccB7I CCANNNNNTGG 1 cut(s) 1046
AccI GTMKAC 1 cut(s) 544
AccII CGCG 1 cut(s) 1362
AccIII TCCGGA 1 cut(s) 1283
AciI CCGC 4 cut(s) 47, 903, 941, 1348
AclWI GGATC 4 cut(s) 124, 167, 581, 1112
AcsI RAATTY 4 cut(s) 425, 1042, 1092, 1165
AfiI CCNNNNNNNGG 2 cut(s) 1046, 1127
AgsI TTSAA 6 cut(s) 16, 923, 1090, 1097, 1171, 1223
AjnI CCWGG 2 cut(s) 340, 1234
AluBI AGCT 4 cut(s) 235, 506, 649, 1268
AluI AGCT 4 cut(s) 235, 506, 649, 1268
Alw26I GTCTC 2 cut(s) 71, 207
AlwI GGATC 4 cut(s) 124, 167, 581, 1112
Aor13HI TCCGGA 1 cut(s) 1283
AoxI GGCC 2 cut(s) 532, 725
ApeKI GCWGC 1 cut(s) 943
ApoI RAATTY 4 cut(s) 425, 1042, 1092, 1165
AspLEI GCGC 2 cut(s) 498, 1362
AspS9I GGNCC 4 cut(s) 260, 533, 725, 1291
AsuHPI GGTGA 4 cut(s) 52, 209, 651, 901
AsuNHI GCTAGC 1 cut(s) 293
AvaII GGWCC 2 cut(s) 260, 1291
BbsI GAAGAC 2 cut(s) 347, 371
BbvCI CCTCAGC 1 cut(s) 141
BbvI GCAGC 1 cut(s) 930
BccI CCATC 4 cut(s) 995, 1106, 1224, 1297
BceAI ACGGC 3 cut(s) 60, 509, 712
BcgI CGANNNNNNTGC 2 cut(s) 1128, 1162
BciT130I CCWGG 2 cut(s) 342, 1236
BciVI GTATCC 1 cut(s) 1099
BcoDI GTCTC 2 cut(s) 71, 207
BfaI CTAG 4 cut(s) 294, 573, 953, 1182
BfmI CTRYAG 1 cut(s) 1009
BfuAI ACCTGC 1 cut(s) 1008
BfuI GTATCC 1 cut(s) 1099
BisI GCNGC 2 cut(s) 941, 944
BlsI GCNGC 2 cut(s) 942, 945
Bme1390I CCNGG 2 cut(s) 342, 1236
Bme18I GGWCC 2 cut(s) 260, 1291
BmgT120I GGNCC 4 cut(s) 260, 533, 725, 1291
BmiI GGNNCC 1 cut(s) 535
BmrFI CCNGG 2 cut(s) 342, 1236
BmrI ACTGGG 1 cut(s) 732
BmsI GCATC 3 cut(s) 145, 403, 527
BmtI GCTAGC 1 cut(s) 297
BmuI ACTGGG 1 cut(s) 732
BoxI GACNNNNGTC 2 cut(s) 371, 1018
BpiI GAAGAC 2 cut(s) 347, 371
Bpu10I CCTNAGC 1 cut(s) 141
BpuEI CTTGAG 2 cut(s) 465, 1009
Bsa29I ATCGAT 1 cut(s) 775
BsaBI GATNNNNATC 1 cut(s) 1116
BsaJI CCNNGG 3 cut(s) 263, 491, 1235
BsaWI WCCGGW 1 cut(s) 1283
BsaXI ACNNNNNCTCC 4 cut(s) 45, 51, 75, 81
Bsc4I CCNNNNNNNGG 2 cut(s) 1046, 1127
Bse1I ACTGG 3 cut(s) 727, 877, 1070
Bse8I GATNNNNATC 1 cut(s) 1116
BseAI TCCGGA 1 cut(s) 1283
BseBI CCWGG 2 cut(s) 342, 1236
BseCI ATCGAT 1 cut(s) 775
BseDI CCNNGG 3 cut(s) 263, 491, 1235
BseGI GGATG 4 cut(s) 160, 394, 1006, 1117
BseJI GATNNNNATC 1 cut(s) 1116
BseLI CCNNNNNNNGG 2 cut(s) 1046, 1127
BseMII CTCAG 3 cut(s) 66, 155, 726
BseNI ACTGG 3 cut(s) 727, 877, 1070
BseRI GAGGAG 1 cut(s) 129
BseXI GCAGC 1 cut(s) 930
BseYI CCCAGC 2 cut(s) 193, 431
BsgI GTGCAG 1 cut(s) 1122
Bsh1236I CGCG 1 cut(s) 1362
BshFI GGCC 2 cut(s) 534, 727
BshVI ATCGAT 1 cut(s) 775
BsiSI CCGG 1 cut(s) 1284
BslFI GGGAC 1 cut(s) 765
BslI CCNNNNNNNGG 2 cut(s) 1046, 1127
BsmAI GTCTC 2 cut(s) 71, 207
BsmFI GGGAC 1 cut(s) 765
BsnI GGCC 2 cut(s) 534, 727
Bsp13I TCCGGA 1 cut(s) 1283
Bsp143I GATC 6 cut(s) 116, 172, 586, 772, 1117, 1311
Bsp19I CCATGG 1 cut(s) 263
BspACI CCGC 4 cut(s) 47, 903, 941, 1348
BspANI GGCC 2 cut(s) 534, 727
BspCNI CTCAG 3 cut(s) 67, 154, 725
BspDI ATCGAT 1 cut(s) 775
BspEI TCCGGA 1 cut(s) 1283
BspFNI CGCG 1 cut(s) 1362
BspLI GGNNCC 1 cut(s) 535
BspMAI CTGCAG 1 cut(s) 1013
BspMI ACCTGC 1 cut(s) 1008
BspOI GCTAGC 1 cut(s) 297
BspPI GGATC 4 cut(s) 124, 167, 581, 1112
BsrI ACTGG 3 cut(s) 727, 877, 1070
BssECI CCNNGG 3 cut(s) 263, 491, 1235
BssMI GATC 6 cut(s) 116, 172, 586, 772, 1117, 1311
BssT1I CCWWGG 1 cut(s) 263
Bst2UI CCWGG 2 cut(s) 342, 1236
Bst4CI ACNGT 2 cut(s) 40, 627
BstAPI GCANNNNNTGC 1 cut(s) 1023
BstC8I GCNNGC 8 cut(s) 295, 299, 792, 901, 1037, 1071, 1158, 1320
BstDEI CTNAG 6 cut(s) 75, 81, 141, 369, 469, 712
BstDSI CCRYGG 2 cut(s) 263, 491
BstENI CCTNNNNNAGG 1 cut(s) 1125
BstF5I GGATG 4 cut(s) 160, 394, 1006, 1117
BstFNI CGCG 1 cut(s) 1362
BstHHI GCGC 2 cut(s) 498, 1362
BstKTI GATC 6 cut(s) 119, 175, 589, 775, 1120, 1314
BstMAI GTCTC 2 cut(s) 71, 207
BstMBI GATC 6 cut(s) 116, 172, 586, 772, 1117, 1311
BstMWI GCNNNNNNNGC 5 cut(s) 232, 1023, 1032, 1207, 1265
BstNI CCWGG 2 cut(s) 342, 1236
BstNSI RCATGY 2 cut(s) 1039, 1073
BstPAI GACNNNNGTC 2 cut(s) 371, 1018
BstSCI CCNGG 2 cut(s) 340, 1234
BstSFI CTRYAG 1 cut(s) 1009
BstUI CGCG 1 cut(s) 1362
BstV1I GCAGC 1 cut(s) 930
BstV2I GAAGAC 2 cut(s) 347, 371
BstX2I RGATCY 1 cut(s) 586
BstXI CCANNNNNNTGG 1 cut(s) 401
BstYI RGATCY 1 cut(s) 586
Bsu15I ATCGAT 1 cut(s) 775
BsuI GTATCC 1 cut(s) 1099
BsuRI GGCC 2 cut(s) 534, 727
BsuTUI ATCGAT 1 cut(s) 775
BtgI CCRYGG 2 cut(s) 263, 491
BtsCI GGATG 4 cut(s) 160, 394, 1006, 1117
BtsI GCAGTG 1 cut(s) 1210
BtsIMutI CAGTG 3 cut(s) 632, 870, 1210
BveI ACCTGC 1 cut(s) 1008
Cac8I GCNNGC 8 cut(s) 295, 299, 792, 901, 1037, 1071, 1158, 1320
CfoI GCGC 2 cut(s) 498, 1362
Cfr13I GGNCC 4 cut(s) 260, 533, 725, 1291
ClaI ATCGAT 1 cut(s) 775
CseI GACGC 1 cut(s) 1023
DdeI CTNAG 6 cut(s) 75, 81, 141, 369, 469, 712
DpnI GATC 6 cut(s) 118, 174, 588, 774, 1119, 1313
DpnII GATC 6 cut(s) 116, 172, 586, 772, 1117, 1311
DraI TTTAAA 1 cut(s) 784
DrdI GACNNNNNNGTC 1 cut(s) 95
DseDI GACNNNNNNGTC 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 263
Eco32I GATATC 2 cut(s) 878, 1250
Eco47I GGWCC 2 cut(s) 260, 1291
EcoNI CCTNNNNNAGG 1 cut(s) 1125
EcoRII CCWGG 2 cut(s) 340, 1234
EcoRV GATATC 2 cut(s) 878, 1250
EcoT14I CCWWGG 1 cut(s) 263
EcoT22I ATGCAT 1 cut(s) 520
ErhI CCWWGG 1 cut(s) 263
FaqI GGGAC 1 cut(s) 765
FauI CCCGC 1 cut(s) 1355
FauNDI CATATG 2 cut(s) 149, 1030
FblI GTMKAC 1 cut(s) 544
Fnu4HI GCNGC 2 cut(s) 941, 944
FokI GGATG 4 cut(s) 167, 401, 1013, 1124
Fsp4HI GCNGC 2 cut(s) 941, 944
FspBI CTAG 4 cut(s) 294, 573, 953, 1182
GlaI GCGC 2 cut(s) 497, 1361
GluI GCNGC 2 cut(s) 941, 944
GsaI CCCAGC 2 cut(s) 197, 435
HaeIII GGCC 2 cut(s) 534, 727
HapII CCGG 1 cut(s) 1284
HgaI GACGC 1 cut(s) 1023
HhaI GCGC 2 cut(s) 498, 1362
Hin6I GCGC 2 cut(s) 496, 1360
HinP1I GCGC 2 cut(s) 496, 1360
HincII GTYRAC 2 cut(s) 36, 975
HindII GTYRAC 2 cut(s) 36, 975
HindIII AAGCTT 1 cut(s) 233
HinfI GANTC 3 cut(s) 743, 906, 976
HpaII CCGG 1 cut(s) 1284
HphI GGTGA 4 cut(s) 52, 209, 651, 901
Hpy166II GTNNAC 7 cut(s) 36, 491, 545, 623, 630, 659, 975
Hpy188I TCNGA 4 cut(s) 76, 1150, 1247, 1311
Hpy188III TCNNGA 3 cut(s) 482, 1220, 1284
Hpy8I GTNNAC 7 cut(s) 36, 491, 545, 623, 630, 659, 975
HpyCH4III ACNGT 2 cut(s) 40, 627
HpyCH4IV ACGT 1 cut(s) 754
HpyF10VI GCNNNNNNNGC 5 cut(s) 232, 1023, 1032, 1207, 1265
HpyF3I CTNAG 6 cut(s) 75, 81, 141, 369, 469, 712
HpySE526I ACGT 1 cut(s) 754
HspAI GCGC 2 cut(s) 496, 1360
Kpn2I TCCGGA 1 cut(s) 1283
Kzo9I GATC 6 cut(s) 116, 172, 586, 772, 1117, 1311
LmnI GCTCC 2 cut(s) 142, 1049
Lsp1109I GCAGC 1 cut(s) 930
LweI GCATC 3 cut(s) 145, 403, 527
MaeI CTAG 4 cut(s) 294, 573, 953, 1182
MaeII ACGT 1 cut(s) 754
MaeIII GTNAC 9 cut(s) 40, 67, 439, 599, 670, 892, 1081, 1132, 1177
MalI GATC 6 cut(s) 118, 174, 588, 774, 1119, 1313
MboI GATC 6 cut(s) 116, 172, 586, 772, 1117, 1311
MboII GAAGA 3 cut(s) 280, 347, 376
MfeI CAATTG 1 cut(s) 1053
MflI RGATCY 1 cut(s) 586
MluCI AATT 7 cut(s) 425, 849, 1042, 1053, 1092, 1151, 1165
MlyI GAGTC 1 cut(s) 970
MmeI TCCRAC 1 cut(s) 31
MnlI CCTC 8 cut(s) 150, 237, 316, 489, 600, 798, 1095, 1304
Mph1103I ATGCAT 1 cut(s) 520
MroI TCCGGA 1 cut(s) 1283
MseI TTAA 2 cut(s) 407, 783
MslI CAYNNNNRTG 1 cut(s) 399
MspA1I CMGCKG 1 cut(s) 943
MspI CCGG 1 cut(s) 1284
MspR9I CCNGG 2 cut(s) 342, 1236
MunI CAATTG 1 cut(s) 1053
MvaI CCWGG 2 cut(s) 342, 1236
MvnI CGCG 1 cut(s) 1362
MwoI GCNNNNNNNGC 5 cut(s) 232, 1023, 1032, 1207, 1265
NcoI CCATGG 1 cut(s) 263
NdeI CATATG 2 cut(s) 149, 1030
NdeII GATC 6 cut(s) 116, 172, 586, 772, 1117, 1311
NheI GCTAGC 1 cut(s) 293
NlaIV GGNNCC 1 cut(s) 535
NmuCI GTSAC 4 cut(s) 40, 599, 1081, 1177
NsiI ATGCAT 1 cut(s) 520
NspI RCATGY 2 cut(s) 1039, 1073
PaeI GCATGC 2 cut(s) 1039, 1073
PfeI GAWTC 2 cut(s) 743, 906
PflMI CCANNNNNTGG 1 cut(s) 1046
PkrI GCNGC 2 cut(s) 942, 945
PleI GAGTC 1 cut(s) 970
PpsI GAGTC 1 cut(s) 970
PshAI GACNNNNGTC 2 cut(s) 371, 1018
Psp6I CCWGG 2 cut(s) 340, 1234
PspFI CCCAGC 2 cut(s) 193, 431
PspGI CCWGG 2 cut(s) 340, 1234
PspN4I GGNNCC 1 cut(s) 535
PspPI GGNCC 4 cut(s) 260, 533, 725, 1291
PstI CTGCAG 1 cut(s) 1013
PsuI RGATCY 1 cut(s) 586
RseI CAYNNNNRTG 1 cut(s) 399
SaqAI TTAA 2 cut(s) 407, 783
SatI GCNGC 2 cut(s) 941, 944
Sau3AI GATC 6 cut(s) 116, 172, 586, 772, 1117, 1311
Sau96I GGNCC 4 cut(s) 260, 533, 725, 1291
SchI GAGTC 1 cut(s) 970
ScrFI CCNGG 2 cut(s) 342, 1236
SfaNI GCATC 3 cut(s) 145, 403, 527
SfcI CTRYAG 1 cut(s) 1009
SinI GGWCC 2 cut(s) 260, 1291
SmiMI CAYNNNNRTG 1 cut(s) 399
SmlI CTYRAG 2 cut(s) 480, 988
SmoI CTYRAG 2 cut(s) 480, 988
SphI GCATGC 2 cut(s) 1039, 1073
Sse9I AATT 7 cut(s) 425, 849, 1042, 1053, 1092, 1151, 1165
SsiI CCGC 4 cut(s) 47, 903, 941, 1348
SspI AATATT 1 cut(s) 256
SspMI CTAG 4 cut(s) 294, 573, 953, 1182
StyD4I CCNGG 2 cut(s) 340, 1234
StyI CCWWGG 1 cut(s) 263
TaaI ACNGT 2 cut(s) 40, 627
TaiI ACGT 1 cut(s) 757
TaqI TCGA 3 cut(s) 358, 775, 1339
TasI AATT 7 cut(s) 425, 849, 1042, 1053, 1092, 1151, 1165
TauI GCSGC 1 cut(s) 943
TfiI GAWTC 2 cut(s) 743, 906
Tru1I TTAA 2 cut(s) 407, 783
Tru9I TTAA 2 cut(s) 407, 783
TscAI CASTG 3 cut(s) 632, 877, 1217
TseFI GTSAC 4 cut(s) 40, 599, 1081, 1177
TseI GCWGC 1 cut(s) 943
Tsp45I GTSAC 4 cut(s) 40, 599, 1081, 1177
TspDTI ATGAA 4 cut(s) 175, 323, 811, 827
TspGWI ACGGA 2 cut(s) 618, 1124
TspRI CASTG 3 cut(s) 632, 877, 1217
Van91I CCANNNNNTGG 1 cut(s) 1046
VpaK11BI GGWCC 2 cut(s) 260, 1291
XagI CCTNNNNNAGG 1 cut(s) 1125
XapI RAATTY 4 cut(s) 425, 1042, 1092, 1165
XceI RCATGY 2 cut(s) 1039, 1073
XmiI GTMKAC 1 cut(s) 544
XspI CTAG 4 cut(s) 294, 573, 953, 1182
Zsp2I ATGCAT 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.