pycom16g26350

PhoD-like phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0013277
Physical Location & Seq
Reverse (-)
28770305 .. 28771718
1414 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g26350.4

Sequence Viewer

Length: 636 bp
ATGGAATCTTGGGGACGTTTTCCAAAGGAGAGAGTTCGGCTATTTAAATTGATAGAAGATAGTAAGAGGGGTGGAACGTTTTTCATAAGTGGAGATGTTCACTTTGGAGAAATTACACGTTATGATTGCGCAACTGGGTATCCATTGTATGATGTTACTGCAAGTGGGATTACCCAAGCAGTTGAGAAGGTAGTCCCACAGCCGTTGCACTTGTTAGTGAGATTTTTGGCATGGTTAACTCCTACCACTATGAGAGTCATGGACCACAACTGCAGATATAGGTCGTGCACATATGGTCTGCCTAATTTTGGAGCAGTTGAGATAGACTGGAATGCAACTCCTGTGACATTGAAAATTGAAGTGAGGGATGTGAACGGAAATCCAGTGGTAGGTGTAGCCACATCGCTATCGGAATTGCAGGCAAGAAATTTCAACTCTTCGATCACCAAGAAAACAAGAGAGCATCAAAGGCACTGCTCTCTGGAAGTCAGTCTACCATGGATTGTCAGATACCGCCTGGCTATTTTAGCTTCTTGTGCTCTAGCTATTTTGGTAATTGCTTTGATAGGAGGAGTTTGGGCTGCCATTTTAGCGTGCAGAAGATGCGGCCGCGGCCTCAAAAGAAAGTGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00790 ko01100 ko02020 map00790 map01100 map02020
Pfam Domains
Protein Families
PhoD

Protein Analysis

212

Amino Acids

23.71

Weight (kDa)

9.42

Isoelectric Point (pI)

39.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013277)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42370 AT5G42370
fragaria_vesca FvH4_5g26760 FvH4_5g26760 FvH4_5g26760 FvH4_5g26760
prunus_persica Prupe.5G000900_v2.0.a1
pyrus_communis pycom16g26350
rosa_chinensis RchiOBHm_Chr7g0217631
rosa_laevigata RLG00000002455
rosa_multiflora Rmu_sc0015965.1_g000001
rosa_roxburghii Rroxscaffold_3G00241790
rosa_rugosa Rorug07G0170500
rosa_samantha Rh7AG310600 Rh7BG301900 Rh7CG329600 Rh7DG310700
rosa_wichuraiana Rw7G026370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 130
AccI GTMKAC 1 cut(s) 493
AccII CGCG 1 cut(s) 612
AciI CCGC 4 cut(s) 514, 606, 610, 612
AclI AACGTT 1 cut(s) 77
AcoI YGGCCR 1 cut(s) 607
AcsI RAATTY 1 cut(s) 427
AfiI CCNNNNNNNGG 2 cut(s) 308, 389
AflIII ACRYGT 1 cut(s) 116
AgsI TTSAA 3 cut(s) 352, 359, 433
AjnI CCWGG 1 cut(s) 516
AluBI AGCT 2 cut(s) 530, 545
AluI AGCT 2 cut(s) 530, 545
Alw21I GWGCWC 2 cut(s) 290, 541
Alw44I GTGCAC 1 cut(s) 286
AoxI GGCC 2 cut(s) 607, 613
ApaLI GTGCAC 1 cut(s) 286
ApeKI GCWGC 1 cut(s) 581
ApoI RAATTY 1 cut(s) 427
AspLEI GCGC 1 cut(s) 131
AspS9I GGNCC 1 cut(s) 262
AsuHPI GGTGA 1 cut(s) 436
AvaII GGWCC 1 cut(s) 262
BaeGI GKGCMC 1 cut(s) 290
BarI GAAGNNNNNNTAC 2 cut(s) 477, 509
Bbv12I GWGCWC 2 cut(s) 290, 541
BbvI GCAGC 1 cut(s) 568
BceAI ACGGC 1 cut(s) 187
BciT130I CCWGG 1 cut(s) 518
BciVI GTATCC 1 cut(s) 150
BfaI CTAG 1 cut(s) 542
BfmI CTRYAG 1 cut(s) 271
BfuI GTATCC 1 cut(s) 150
BisI GCNGC 4 cut(s) 582, 607, 610, 613
BlsI GCNGC 4 cut(s) 583, 608, 611, 614
Bme1390I CCNGG 1 cut(s) 518
Bme18I GGWCC 1 cut(s) 262
BmgT120I GGNCC 1 cut(s) 262
BmrFI CCNGG 1 cut(s) 518
BmrI ACTGGG 1 cut(s) 144
BmsI GCATC 2 cut(s) 472, 593
BmuI ACTGGG 1 cut(s) 144
BsaJI CCNNGG 2 cut(s) 497, 610
Bsc4I CCNNNNNNNGG 2 cut(s) 308, 389
Bse1I ACTGG 3 cut(s) 139, 332, 383
BseBI CCWGG 1 cut(s) 518
BseDI CCNNGG 2 cut(s) 497, 610
BseGI GGATG 1 cut(s) 373
BseLI CCNNNNNNNGG 2 cut(s) 308, 389
BseNI ACTGG 3 cut(s) 139, 332, 383
BseRI GAGGAG 1 cut(s) 585
BseSI GKGCMC 1 cut(s) 290
BseX3I CGGCCG 1 cut(s) 607
BseXI GCAGC 1 cut(s) 568
BsgI GTGCAG 1 cut(s) 616
Bsh1236I CGCG 1 cut(s) 612
Bsh1285I CGRYCG 1 cut(s) 610
BshFI GGCC 2 cut(s) 609, 615
BsiEI CGRYCG 1 cut(s) 610
BsiHKAI GWGCWC 2 cut(s) 290, 541
BslFI GGGAC 2 cut(s) 27, 179
BslI CCNNNNNNNGG 2 cut(s) 308, 389
BsmFI GGGAC 2 cut(s) 27, 179
BsmI GAATGC 1 cut(s) 337
BsnI GGCC 2 cut(s) 609, 615
Bsp1286I GDGCHC 2 cut(s) 290, 541
Bsp143I GATC 1 cut(s) 441
Bsp19I CCATGG 1 cut(s) 497
BspACI CCGC 4 cut(s) 514, 606, 610, 612
BspANI GGCC 2 cut(s) 609, 615
BspFNI CGCG 1 cut(s) 612
BspMAI CTGCAG 1 cut(s) 275
BsrI ACTGG 3 cut(s) 139, 332, 383
BssECI CCNNGG 2 cut(s) 497, 610
BssMI GATC 1 cut(s) 441
BssT1I CCWWGG 1 cut(s) 497
Bst2UI CCWGG 1 cut(s) 518
Bst6I CTCTTC 1 cut(s) 442
BstAPI GCANNNNNTGC 1 cut(s) 603
BstC8I GCNNGC 2 cut(s) 420, 595
BstDSI CCRYGG 2 cut(s) 497, 610
BstF5I GGATG 1 cut(s) 373
BstFNI CGCG 1 cut(s) 612
BstHHI GCGC 1 cut(s) 131
BstKTI GATC 1 cut(s) 444
BstMBI GATC 1 cut(s) 441
BstMCI CGRYCG 1 cut(s) 610
BstMWI GCNNNNNNNGC 6 cut(s) 469, 527, 536, 590, 603, 612
BstNI CCWGG 1 cut(s) 518
BstSCI CCNGG 1 cut(s) 516
BstSFI CTRYAG 1 cut(s) 271
BstSLI GKGCMC 1 cut(s) 290
BstUI CGCG 1 cut(s) 612
BstV1I GCAGC 1 cut(s) 568
BstZI CGGCCG 1 cut(s) 607
BsuI GTATCC 1 cut(s) 150
BsuRI GGCC 2 cut(s) 609, 615
BtgI CCRYGG 2 cut(s) 497, 610
BtgZI GCGATG 1 cut(s) 387
BtsCI GGATG 1 cut(s) 373
BtsI GCAGTG 1 cut(s) 472
BtsIMutI CAGTG 2 cut(s) 390, 472
Cac8I GCNNGC 2 cut(s) 420, 595
CciNI GCGGCCGC 1 cut(s) 607
CfoI GCGC 1 cut(s) 131
Cfr13I GGNCC 1 cut(s) 262
Cfr42I CCGCGG 1 cut(s) 613
CspCI CAANNNNNGTGG 2 cut(s) 186, 221
CviAII CATG 3 cut(s) 231, 259, 498
CviJI RGCY 9 cut(s) 40, 202, 398, 521, 530, 545, 581, 609, 615
CviKI_1 RGCY 9 cut(s) 40, 202, 398, 521, 530, 545, 581, 609, 615
DpnI GATC 1 cut(s) 443
DpnII GATC 1 cut(s) 441
DraI TTTAAA 1 cut(s) 46
EaeI YGGCCR 1 cut(s) 607
EagI CGGCCG 1 cut(s) 607
Eam1104I CTCTTC 1 cut(s) 442
EarI CTCTTC 1 cut(s) 442
EclXI CGGCCG 1 cut(s) 607
Eco130I CCWWGG 1 cut(s) 497
Eco47I GGWCC 1 cut(s) 262
Eco52I CGGCCG 1 cut(s) 607
EcoRII CCWGG 1 cut(s) 516
EcoT14I CCWWGG 1 cut(s) 497
ErhI CCWWGG 1 cut(s) 497
FaeI CATG 3 cut(s) 234, 262, 501
FaqI GGGAC 2 cut(s) 27, 179
FatI CATG 3 cut(s) 230, 258, 497
FauNDI CATATG 1 cut(s) 292
FblI GTMKAC 1 cut(s) 493
Fnu4HI GCNGC 4 cut(s) 582, 607, 610, 613
FokI GGATG 1 cut(s) 380
Fsp4HI GCNGC 4 cut(s) 582, 607, 610, 613
FspBI CTAG 1 cut(s) 542
FspI TGCGCA 1 cut(s) 130
GlaI GCGC 1 cut(s) 130
GluI GCNGC 4 cut(s) 582, 607, 610, 613
HaeIII GGCC 2 cut(s) 609, 615
HhaI GCGC 1 cut(s) 131
Hin1II CATG 3 cut(s) 234, 262, 501
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HincII GTYRAC 1 cut(s) 237
HindII GTYRAC 1 cut(s) 237
HinfI GANTC 2 cut(s) 5, 255
HpaI GTTAAC 1 cut(s) 237
HphI GGTGA 1 cut(s) 436
Hpy166II GTNNAC 5 cut(s) 100, 237, 288, 373, 494
Hpy188I TCNGA 2 cut(s) 412, 509
Hpy188III TCNNGA 1 cut(s) 482
Hpy8I GTNNAC 5 cut(s) 100, 237, 288, 373, 494
HpyAV CCTTC 1 cut(s) 181
HpyCH4IV ACGT 3 cut(s) 16, 77, 118
HpyCH4V TGCA 7 cut(s) 161, 208, 273, 288, 335, 418, 597
HpyF10VI GCNNNNNNNGC 6 cut(s) 469, 527, 536, 590, 603, 612
HpySE526I ACGT 3 cut(s) 16, 77, 118
Hsp92II CATG 3 cut(s) 234, 262, 501
HspAI GCGC 1 cut(s) 129
KspAI GTTAAC 1 cut(s) 237
KspI CCGCGG 1 cut(s) 613
Kzo9I GATC 1 cut(s) 441
LmnI GCTCC 1 cut(s) 311
LpnPI CCDG 8 cut(s) 120, 313, 354, 396, 404, 467, 503, 530
Lsp1109I GCAGC 1 cut(s) 568
LweI GCATC 2 cut(s) 472, 593
MaeI CTAG 1 cut(s) 542
MaeII ACGT 3 cut(s) 16, 77, 118
MaeIII GTNAC 2 cut(s) 154, 343
MalI GATC 1 cut(s) 443
MboI GATC 1 cut(s) 441
MboII GAAGA 3 cut(s) 68, 429, 612
MhlI GDGCHC 2 cut(s) 290, 541
MluCI AATT 7 cut(s) 47, 111, 304, 354, 413, 427, 555
MlyI GAGTC 1 cut(s) 264
MnlI CCTC 4 cut(s) 60, 357, 563, 626
MseI TTAA 2 cut(s) 45, 236
MspA1I CMGCKG 1 cut(s) 612
MspR9I CCNGG 1 cut(s) 518
Mva1269I GAATGC 1 cut(s) 337
MvaI CCWGG 1 cut(s) 518
MvnI CGCG 1 cut(s) 612
MwoI GCNNNNNNNGC 6 cut(s) 469, 527, 536, 590, 603, 612
NcoI CCATGG 1 cut(s) 497
NdeI CATATG 1 cut(s) 292
NdeII GATC 1 cut(s) 441
NlaIII CATG 3 cut(s) 234, 262, 501
NmuCI GTSAC 1 cut(s) 343
NotI GCGGCCGC 1 cut(s) 607
NsbI TGCGCA 1 cut(s) 130
PctI GAATGC 1 cut(s) 337
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 4 cut(s) 583, 608, 611, 614
PleI GAGTC 1 cut(s) 263
PpsI GAGTC 1 cut(s) 263
Psp1406I AACGTT 1 cut(s) 77
Psp6I CCWGG 1 cut(s) 516
PspGI CCWGG 1 cut(s) 516
PspPI GGNCC 1 cut(s) 262
PstI CTGCAG 1 cut(s) 275
SacII CCGCGG 1 cut(s) 613
SaqAI TTAA 2 cut(s) 45, 236
SatI GCNGC 4 cut(s) 582, 607, 610, 613
Sau3AI GATC 1 cut(s) 441
Sau96I GGNCC 1 cut(s) 262
SchI GAGTC 1 cut(s) 264
ScrFI CCNGG 1 cut(s) 518
SduI GDGCHC 2 cut(s) 290, 541
SetI ASST 8 cut(s) 19, 80, 121, 192, 284, 394, 532, 547
SfaNI GCATC 2 cut(s) 472, 593
SfcI CTRYAG 1 cut(s) 271
Sfr303I CCGCGG 1 cut(s) 613
SgrBI CCGCGG 1 cut(s) 613
SinI GGWCC 1 cut(s) 262
SmiI ATTTAAAT 1 cut(s) 46
Sse9I AATT 7 cut(s) 47, 111, 304, 354, 413, 427, 555
SsiI CCGC 4 cut(s) 514, 606, 610, 612
SspMI CTAG 1 cut(s) 542
StyD4I CCNGG 1 cut(s) 516
StyI CCWWGG 1 cut(s) 497
SwaI ATTTAAAT 1 cut(s) 46
TaiI ACGT 3 cut(s) 19, 80, 121
TaqI TCGA 1 cut(s) 440
TasI AATT 7 cut(s) 47, 111, 304, 354, 413, 427, 555
TauI GCSGC 3 cut(s) 609, 612, 615
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 2 cut(s) 45, 236
Tru9I TTAA 2 cut(s) 45, 236
TscAI CASTG 2 cut(s) 390, 479
TseFI GTSAC 1 cut(s) 343
TseI GCWGC 1 cut(s) 581
Tsp45I GTSAC 1 cut(s) 343
TspDTI ATGAA 1 cut(s) 73
TspGWI ACGGA 1 cut(s) 390
TspRI CASTG 2 cut(s) 390, 479
VneI GTGCAC 1 cut(s) 286
VpaK11BI GGWCC 1 cut(s) 262
XapI RAATTY 1 cut(s) 427
XmiI GTMKAC 1 cut(s) 493
XspI CTAG 1 cut(s) 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.