AT5G42560

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010737
Physical Location & Seq
Forward (+)
17014847 .. 17017252
2406 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G42560.3

Sequence Viewer

Length: 891 bp
ATGATTGGATCGTTTCTTACAAGAGGATTGGTGATGGTGTTGGGCTATGCTTACCCTGCGTATGAATGTTACAAGACTGTTGAAAAGAATAGGCCTGAAATCGAGCAACTTCGCTTTTGGTGTCAGTACTGGATATTGGTTGCTTGCTTGACAGTTTTTGAGAGAGTTGGTGATGCGTTTGTTTCATGGGTTCCGATGTACAGTGAAGCTAAGTTGGCATTCTTCATATACCTGTGGTATCCTAAAACCAGGGGTACTACATATGTCTACGAGTCCTTCTTTAGGCCATATCTCTCACAGCATGAGAATGACATAGACCATAGTTTGCTCGAGCTAAGGACTAGAGCAGGAGATATGGCTGTTATATACTGGCAACGAGTTGCAAGTTATGGTCAGACCAGAATCCTTGAGATTTTGCAGTATGTTGCTGCACAATCAACTCCAAGACCGCAGCCACCTCAGAAACGTGGAGGTAGAGCTAATCAAGCTCCTGCGAAGCCTAAGAAAGCCCCTGTCCCCCAATCAGAACCTGAAGAAGTATCATTGTCCTCGTCTTCTAGCTCATCTTCAAGTGAAAATGAAGGTAATGAGCCAACCCGTAAAGTATCAGGCCCGTCAAGACCTAGACCAACAGTGACATCTGTACCAGCTGCAGATCCCAAAAACGCGGGTACCACTCAGATAGCACAGAAATCAGTAGCTTCCCCAATTGTGAACCCACCACAGTCAACCACCCAAGTGGAACCAATGCAGATAGAAGAAGTGGAAGGAGAGGCAGAATCAGGGAATGAAAATCCCAACCCGGAAGGTCCAAAGGAGACAGTGATGGAGGAGACAATCAGGATGACTCGTGGGAGGTTGAGGAAGACGCGTTCGGAAGAAAGCCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

296

Amino Acids

33.36

Weight (kDa)

7.65

Isoelectric Point (pI)

59.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 8 - 86 1.5e-26 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010737)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42560 AT5G42560 AT5G42560
fragaria_vesca FvH4_6g19930
malus_domestica MD12G1036900.v1.1 MD14G1034500.v1.1 MD14G1035900.v1.1
prunus_persica Prupe.7G098200_v2.0.a1
pyrus_communis pycom14g03170
rosa_chinensis RchiOBHm_Chr3g0475331
rosa_laevigata RLG00000023851
rosa_multiflora Rmu_co8097434.1_g000001 Rmu_ssc0000140.1_g000014
rosa_roxburghii Rroxscaffold_6G00406380
rosa_rugosa Rorug03G0148200
rosa_samantha Rh3AG198100 Rh3BG228300 Rh3CG222600 Rh3DG223500
rosa_wichuraiana Rw3G018000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 671
AccB1I GGYRCC 1 cut(s) 671
AccI GTMKAC 1 cut(s) 267
AccII CGCG 2 cut(s) 668, 871
AciI CCGC 2 cut(s) 449, 668
AclWI GGATC 2 cut(s) 16, 650
AcuI CTGAAG 1 cut(s) 552
AfaI GTAC 5 cut(s) 128, 200, 256, 645, 673
AfiI CCNNNNNNNGG 1 cut(s) 282
AflIII ACRYGT 1 cut(s) 869
AgsI TTSAA 2 cut(s) 83, 570
AjnI CCWGG 1 cut(s) 248
AleI CACNNNNGTG 1 cut(s) 737
AloI GAACNNNNNNTCC 2 cut(s) 856, 888
AluBI AGCT 7 cut(s) 209, 334, 479, 488, 561, 650, 701
AluI AGCT 7 cut(s) 209, 334, 479, 488, 561, 650, 701
Alw26I GTCTC 2 cut(s) 812, 827
AlwI GGATC 2 cut(s) 16, 650
AlwNI CAGNNNCTG 1 cut(s) 530
Ama87I CYCGRG 1 cut(s) 329
AoxI GGCC 3 cut(s) 92, 284, 610
ApeKI GCWGC 3 cut(s) 428, 451, 650
Asp718I GGTACC 1 cut(s) 671
AspS9I GGNCC 2 cut(s) 611, 809
AsuC2I CCSGG 1 cut(s) 803
AsuHPI GGTGA 2 cut(s) 43, 182
AvaI CYCGRG 1 cut(s) 329
AvaII GGWCC 1 cut(s) 809
BaeI ACNNNNGTAYC 4 cut(s) 627, 655, 660, 688
BanI GGYRCC 1 cut(s) 671
BauI CACGAG 1 cut(s) 849
BbsI GAAGAC 2 cut(s) 546, 872
BbvI GCAGC 3 cut(s) 415, 463, 637
BccI CCATC 2 cut(s) 28, 820
BceAI ACGGC 1 cut(s) 870
BciT130I CCWGG 1 cut(s) 250
BciVI GTATCC 1 cut(s) 249
BcnI CCSGG 1 cut(s) 803
BcoDI GTCTC 2 cut(s) 812, 827
BfaI CTAG 3 cut(s) 342, 558, 624
BfmI CTRYAG 1 cut(s) 651
BfuI GTATCC 1 cut(s) 249
BisI GCNGC 3 cut(s) 429, 452, 651
BlsI GCNGC 3 cut(s) 430, 453, 652
BmcAI AGTACT 1 cut(s) 128
Bme1390I CCNGG 2 cut(s) 250, 803
Bme18I GGWCC 1 cut(s) 809
BmeT110I CYCGRG 1 cut(s) 329
BmgT120I GGNCC 2 cut(s) 611, 809
BmiI GGNNCC 3 cut(s) 192, 673, 744
BmrFI CCNGG 2 cut(s) 250, 803
BmsI GCATC 1 cut(s) 163
BpiI GAAGAC 2 cut(s) 546, 872
Bpu10I CCTNAGC 1 cut(s) 335
BpuEI CTTGAG 1 cut(s) 428
BpuMI CCSGG 1 cut(s) 803
BsaJI CCNNGG 1 cut(s) 249
Bsc4I CCNNNNNNNGG 1 cut(s) 282
Bse1I ACTGG 2 cut(s) 134, 374
BseBI CCWGG 1 cut(s) 250
BseDI CCNNGG 1 cut(s) 249
BseGI GGATG 1 cut(s) 849
BseLI CCNNNNNNNGG 1 cut(s) 282
BseMII CTCAG 2 cut(s) 473, 692
BseNI ACTGG 2 cut(s) 134, 374
BseRI GAGGAG 1 cut(s) 845
BseXI GCAGC 3 cut(s) 415, 463, 637
BsgI GTGCAG 1 cut(s) 414
Bsh1236I CGCG 2 cut(s) 668, 871
BshFI GGCC 3 cut(s) 94, 286, 612
BshNI GGYRCC 1 cut(s) 671
BsiHKCI CYCGRG 1 cut(s) 329
BsiSI CCGG 1 cut(s) 803
BslFI GGGAC 1 cut(s) 500
BslI CCNNNNNNNGG 1 cut(s) 282
BsmAI GTCTC 2 cut(s) 812, 827
BsmFI GGGAC 1 cut(s) 500
BsmI GAATGC 1 cut(s) 218
BsnI GGCC 3 cut(s) 94, 286, 612
BsoBI CYCGRG 1 cut(s) 329
Bsp1407I TGTACA 1 cut(s) 198
Bsp143I GATC 2 cut(s) 8, 655
BspACI CCGC 2 cut(s) 449, 668
BspANI GGCC 3 cut(s) 94, 286, 612
BspCNI CTCAG 2 cut(s) 472, 691
BspFNI CGCG 2 cut(s) 668, 871
BspLI GGNNCC 3 cut(s) 192, 673, 744
BspMAI CTGCAG 1 cut(s) 655
BspPI GGATC 2 cut(s) 16, 650
BspT107I GGYRCC 1 cut(s) 671
BsrGI TGTACA 1 cut(s) 198
BsrI ACTGG 2 cut(s) 134, 374
BssECI CCNNGG 1 cut(s) 249
BssMI GATC 2 cut(s) 8, 655
BssSI CACGAG 1 cut(s) 849
Bst2BI CACGAG 1 cut(s) 849
Bst2UI CCWGG 1 cut(s) 250
Bst4CI ACNGT 6 cut(s) 79, 154, 203, 634, 726, 823
BstAUI TGTACA 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 145
BstDEI CTNAG 5 cut(s) 210, 335, 459, 501, 678
BstENI CCTNNNNNAGG 1 cut(s) 280
BstF5I GGATG 1 cut(s) 849
BstFNI CGCG 2 cut(s) 668, 871
BstKTI GATC 2 cut(s) 11, 658
BstMAI GTCTC 2 cut(s) 812, 827
BstMBI GATC 2 cut(s) 8, 655
BstMWI GCNNNNNNNGC 3 cut(s) 56, 215, 485
BstNI CCWGG 1 cut(s) 250
BstSCI CCNGG 2 cut(s) 248, 801
BstSFI CTRYAG 1 cut(s) 651
BstUI CGCG 2 cut(s) 668, 871
BstV1I GCAGC 3 cut(s) 415, 463, 637
BstV2I GAAGAC 2 cut(s) 546, 872
BstX2I RGATCY 1 cut(s) 655
BstXI CCANNNNNNTGG 1 cut(s) 739
BstYI RGATCY 1 cut(s) 655
BsuI GTATCC 1 cut(s) 249
BsuRI GGCC 3 cut(s) 94, 286, 612
BtsCI GGATG 1 cut(s) 849
BtsIMutI CAGTG 3 cut(s) 208, 639, 828
Cac8I GCNNGC 1 cut(s) 145
CaiI CAGNNNCTG 1 cut(s) 530
Cfr13I GGNCC 2 cut(s) 611, 809
CseI GACGC 1 cut(s) 877
Csp6I GTAC 5 cut(s) 127, 199, 255, 644, 672
CviAII CATG 2 cut(s) 186, 302
CviQI GTAC 5 cut(s) 127, 199, 255, 644, 672
DdeI CTNAG 5 cut(s) 210, 335, 459, 501, 678
DpnI GATC 2 cut(s) 10, 657
DpnII GATC 2 cut(s) 8, 655
Eco147I AGGCCT 1 cut(s) 94
Eco47I GGWCC 1 cut(s) 809
Eco57I CTGAAG 1 cut(s) 552
Eco88I CYCGRG 1 cut(s) 329
EcoNI CCTNNNNNAGG 1 cut(s) 280
EcoRII CCWGG 1 cut(s) 248
FaeI CATG 2 cut(s) 189, 305
FaqI GGGAC 1 cut(s) 500
FatI CATG 2 cut(s) 185, 301
FauI CCCGC 1 cut(s) 661
FauNDI CATATG 1 cut(s) 262
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 3 cut(s) 429, 452, 651
FokI GGATG 1 cut(s) 856
Fsp4HI GCNGC 3 cut(s) 429, 452, 651
FspBI CTAG 3 cut(s) 342, 558, 624
GluI GCNGC 3 cut(s) 429, 452, 651
HaeIII GGCC 3 cut(s) 94, 286, 612
HapII CCGG 1 cut(s) 803
HgaI GACGC 1 cut(s) 877
Hin1II CATG 2 cut(s) 189, 305
HincII GTYRAC 1 cut(s) 729
HindII GTYRAC 1 cut(s) 729
HinfI GANTC 4 cut(s) 272, 402, 779, 847
HpaII CCGG 1 cut(s) 803
HphI GGTGA 2 cut(s) 43, 182
Hpy166II GTNNAC 3 cut(s) 268, 715, 729
Hpy188I TCNGA 6 cut(s) 195, 396, 462, 526, 681, 877
Hpy188III TCNNGA 2 cut(s) 618, 841
Hpy8I GTNNAC 3 cut(s) 268, 715, 729
HpyAV CCTTC 4 cut(s) 286, 575, 761, 800
HpyCH4III ACNGT 6 cut(s) 79, 154, 203, 634, 726, 823
HpyCH4IV ACGT 1 cut(s) 466
HpyCH4V TGCA 5 cut(s) 383, 418, 431, 653, 751
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 215, 485
HpyF3I CTNAG 5 cut(s) 210, 335, 459, 501, 678
HpySE526I ACGT 1 cut(s) 466
Hsp92II CATG 2 cut(s) 189, 305
KpnI GGTACC 1 cut(s) 675
Kzo9I GATC 2 cut(s) 8, 655
LmnI GCTCC 1 cut(s) 493
Lsp1109I GCAGC 3 cut(s) 415, 463, 637
LweI GCATC 1 cut(s) 163
MaeI CTAG 3 cut(s) 342, 558, 624
MaeII ACGT 1 cut(s) 466
MaeIII GTNAC 2 cut(s) 68, 634
MalI GATC 2 cut(s) 10, 657
MboI GATC 2 cut(s) 8, 655
MboII GAAGA 7 cut(s) 214, 545, 546, 558, 770, 877, 890
MfeI CAATTG 1 cut(s) 708
MflI RGATCY 1 cut(s) 655
MluCI AATT 1 cut(s) 708
MluI ACGCGT 1 cut(s) 869
MlyI GAGTC 2 cut(s) 281, 841
MnlI CCTC 8 cut(s) 17, 464, 468, 559, 766, 823, 849, 855
MslI CAYNNNNRTG 2 cut(s) 306, 737
MspA1I CMGCKG 1 cut(s) 650
MspI CCGG 1 cut(s) 803
MspR9I CCNGG 2 cut(s) 250, 803
MunI CAATTG 1 cut(s) 708
Mva1269I GAATGC 1 cut(s) 218
MvaI CCWGG 1 cut(s) 250
MvnI CGCG 2 cut(s) 668, 871
MwoI GCNNNNNNNGC 3 cut(s) 56, 215, 485
NciI CCSGG 1 cut(s) 803
NdeI CATATG 1 cut(s) 262
NdeII GATC 2 cut(s) 8, 655
NlaIII CATG 2 cut(s) 189, 305
NlaIV GGNNCC 3 cut(s) 192, 673, 744
NmuCI GTSAC 1 cut(s) 634
OliI CACNNNNGTG 1 cut(s) 737
PaeR7I CTCGAG 1 cut(s) 329
PceI AGGCCT 1 cut(s) 94
PctI GAATGC 1 cut(s) 218
PfeI GAWTC 2 cut(s) 402, 779
PkrI GCNGC 3 cut(s) 430, 453, 652
PleI GAGTC 2 cut(s) 280, 841
PpsI GAGTC 2 cut(s) 280, 841
Psp6I CCWGG 1 cut(s) 248
PspGI CCWGG 1 cut(s) 248
PspN4I GGNNCC 3 cut(s) 192, 673, 744
PspPI GGNCC 2 cut(s) 611, 809
PspXI VCTCGAGB 1 cut(s) 329
PstI CTGCAG 1 cut(s) 655
PstNI CAGNNNCTG 1 cut(s) 530
PsuI RGATCY 1 cut(s) 655
PvuII CAGCTG 1 cut(s) 650
RsaI GTAC 5 cut(s) 128, 200, 256, 645, 673
RsaNI GTAC 5 cut(s) 127, 199, 255, 644, 672
RseI CAYNNNNRTG 2 cut(s) 306, 737
SatI GCNGC 3 cut(s) 429, 452, 651
Sau3AI GATC 2 cut(s) 8, 655
Sau96I GGNCC 2 cut(s) 611, 809
ScaI AGTACT 1 cut(s) 128
SchI GAGTC 2 cut(s) 281, 841
ScrFI CCNGG 2 cut(s) 250, 803
SfaNI GCATC 1 cut(s) 163
SfcI CTRYAG 1 cut(s) 651
Sfr274I CTCGAG 1 cut(s) 329
SinI GGWCC 1 cut(s) 809
SlaI CTCGAG 1 cut(s) 329
SmiMI CAYNNNNRTG 2 cut(s) 306, 737
SmlI CTYRAG 2 cut(s) 329, 407
SmoI CTYRAG 2 cut(s) 329, 407
Sse9I AATT 1 cut(s) 708
SseBI AGGCCT 1 cut(s) 94
SsiI CCGC 2 cut(s) 449, 668
SspMI CTAG 3 cut(s) 342, 558, 624
StuI AGGCCT 1 cut(s) 94
StyD4I CCNGG 2 cut(s) 248, 801
TaaI ACNGT 6 cut(s) 79, 154, 203, 634, 726, 823
TaiI ACGT 1 cut(s) 469
TaqI TCGA 2 cut(s) 102, 330
TasI AATT 1 cut(s) 708
TatI WGTACW 2 cut(s) 126, 198
TfiI GAWTC 2 cut(s) 402, 779
TscAI CASTG 3 cut(s) 208, 639, 828
TseFI GTSAC 1 cut(s) 634
TseI GCWGC 3 cut(s) 428, 451, 650
Tsp45I GTSAC 1 cut(s) 634
TspDTI ATGAA 5 cut(s) 78, 174, 214, 594, 804
TspRI CASTG 3 cut(s) 208, 639, 828
VpaK11BI GGWCC 1 cut(s) 809
XagI CCTNNNNNAGG 1 cut(s) 280
XhoI CTCGAG 1 cut(s) 329
XmiI GTMKAC 1 cut(s) 267
XspI CTAG 3 cut(s) 342, 558, 624
ZrmI AGTACT 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.