FvH4_6g19930

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0010737
Physical Location & Seq
Forward (+)
13375028 .. 13377900
2873 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g19930.t1

Sequence Viewer

Length: 510 bp
ATGTTGGGGAGCTTGCTTACCAGATGTCTCATTTTGTCTTTTGGGTATGCATACCCTGCATTTGAGTGTTACAAAATCGTGGAGAAGAACAGAGTTGAGATTGAAGAACTCAGGTTTTGGTGTCAATACTGGATCATTGTGGCAATGCTTACAGTTCTTGAAAGGCTTGGAGATGTATTCGTTTCATGGCTGCCCATGTATGGTGAGGCGAAGGTTGCCATTTTCATCTATCTTTGGTATCCAAAAACCAGGGGAACTGGGTACATATACAAGACCCTGTTGAGGCCATATGTATCGAAGCACGAAAAAGACATTGACGGGAAAATAATGGAGATGAGAGCAAGGGTGTGGGATCTCATCGTTTTCTACTGGCAACACTTCGCCCATTACGGCCAGACTGCTTTCTTCCAGTTCCTTGGCTACATGGCTGCTCAATCCTCCAAAATGACCAAAGCCGCAGCCGAGCCTATGAATGAGCAGTCGAATGGCGGCACAGGCAAAGATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

170

Amino Acids

19.84

Weight (kDa)

8.34

Isoelectric Point (pI)

36.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 19 - 97 9.5e-25 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010737)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42560 AT5G42560 AT5G42560
fragaria_vesca FvH4_6g19930
malus_domestica MD12G1036900.v1.1 MD14G1034500.v1.1 MD14G1035900.v1.1
prunus_persica Prupe.7G098200_v2.0.a1
pyrus_communis pycom14g03170
rosa_chinensis RchiOBHm_Chr3g0475331
rosa_laevigata RLG00000023851
rosa_multiflora Rmu_co8097434.1_g000001 Rmu_ssc0000140.1_g000014
rosa_roxburghii Rroxscaffold_6G00406380
rosa_rugosa Rorug03G0148200
rosa_samantha Rh3AG198100 Rh3BG228300 Rh3CG222600 Rh3DG223500
rosa_wichuraiana Rw3G018000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 456, 489
AclWI GGATC 2 cut(s) 140, 360
AcoI YGGCCR 1 cut(s) 391
AfaI GTAC 1 cut(s) 263
AfiI CCNNNNNNNGG 2 cut(s) 200, 282
AgsI TTSAA 2 cut(s) 104, 161
AjnI CCWGG 1 cut(s) 248
AluBI AGCT 1 cut(s) 12
AluI AGCT 1 cut(s) 12
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 2 cut(s) 140, 360
AoxI GGCC 2 cut(s) 284, 391
ApeKI GCWGC 3 cut(s) 190, 428, 458
AsuHPI GGTGA 1 cut(s) 215
BbvI GCAGC 3 cut(s) 177, 415, 470
BceAI ACGGC 1 cut(s) 406
BciT130I CCWGG 1 cut(s) 250
BciVI GTATCC 1 cut(s) 249
BcoDI GTCTC 1 cut(s) 32
BfuI GTATCC 1 cut(s) 249
BisI GCNGC 5 cut(s) 191, 429, 456, 459, 490
BlsI GCNGC 5 cut(s) 192, 430, 457, 460, 491
Bme1390I CCNGG 1 cut(s) 250
BmrFI CCNGG 1 cut(s) 250
BmrI ACTGGG 1 cut(s) 267
BmuI ACTGGG 1 cut(s) 267
BsaJI CCNNGG 2 cut(s) 249, 415
Bsc4I CCNNNNNNNGG 2 cut(s) 200, 282
Bse1I ACTGG 4 cut(s) 134, 262, 374, 409
Bse3DI GCAATG 1 cut(s) 150
BseBI CCWGG 1 cut(s) 250
BseDI CCNNGG 2 cut(s) 249, 415
BseLI CCNNNNNNNGG 2 cut(s) 200, 282
BseMI GCAATG 1 cut(s) 150
BseMII CTCAG 1 cut(s) 124
BseNI ACTGG 4 cut(s) 134, 262, 374, 409
BseXI GCAGC 3 cut(s) 177, 415, 470
BshFI GGCC 2 cut(s) 286, 393
BslI CCNNNNNNNGG 2 cut(s) 200, 282
BsmAI GTCTC 1 cut(s) 32
BsnI GGCC 2 cut(s) 286, 393
Bsp143I GATC 2 cut(s) 132, 352
BspACI CCGC 2 cut(s) 456, 489
BspANI GGCC 2 cut(s) 286, 393
BspCNI CTCAG 1 cut(s) 123
BspPI GGATC 2 cut(s) 140, 360
BsrDI GCAATG 1 cut(s) 150
BsrI ACTGG 4 cut(s) 134, 262, 374, 409
BssECI CCNNGG 2 cut(s) 249, 415
BssMI GATC 2 cut(s) 132, 352
BssT1I CCWWGG 1 cut(s) 415
Bst2UI CCWGG 1 cut(s) 250
Bst4CI ACNGT 1 cut(s) 154
BstAPI GCANNNNNTGC 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 14
BstDEI CTNAG 1 cut(s) 110
BstKTI GATC 2 cut(s) 135, 355
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 2 cut(s) 132, 352
BstMWI GCNNNNNNNGC 3 cut(s) 56, 215, 495
BstNI CCWGG 1 cut(s) 250
BstSCI CCNGG 1 cut(s) 248
BstV1I GCAGC 3 cut(s) 177, 415, 470
BstX2I RGATCY 1 cut(s) 352
BstXI CCANNNNNNTGG 1 cut(s) 416
BstYI RGATCY 1 cut(s) 352
BsuI GTATCC 1 cut(s) 249
BsuRI GGCC 2 cut(s) 286, 393
Cac8I GCNNGC 1 cut(s) 14
Csp6I GTAC 1 cut(s) 262
CviAII CATG 3 cut(s) 186, 196, 424
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 1 cut(s) 110
DpnI GATC 2 cut(s) 134, 354
DpnII GATC 2 cut(s) 132, 352
EaeI YGGCCR 1 cut(s) 391
Eco130I CCWWGG 1 cut(s) 415
EcoRII CCWGG 1 cut(s) 248
EcoT14I CCWWGG 1 cut(s) 415
EcoT22I ATGCAT 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 415
FaeI CATG 3 cut(s) 189, 199, 427
FatI CATG 3 cut(s) 185, 195, 423
FauNDI CATATG 1 cut(s) 289
Fnu4HI GCNGC 5 cut(s) 191, 429, 456, 459, 490
Fsp4HI GCNGC 5 cut(s) 191, 429, 456, 459, 490
GluI GCNGC 5 cut(s) 191, 429, 456, 459, 490
HaeIII GGCC 2 cut(s) 286, 393
Hin1II CATG 3 cut(s) 189, 199, 427
HphI GGTGA 1 cut(s) 215
Hpy188III TCNNGA 1 cut(s) 158
HpyAV CCTTC 1 cut(s) 205
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4V TGCA 2 cut(s) 50, 59
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 215, 495
HpyF3I CTNAG 1 cut(s) 110
Hsp92II CATG 3 cut(s) 189, 199, 427
Kzo9I GATC 2 cut(s) 132, 352
LmnI GCTCC 1 cut(s) 9
Lsp1109I GCAGC 3 cut(s) 177, 415, 470
MaeIII GTNAC 1 cut(s) 68
MalI GATC 2 cut(s) 134, 354
MboI GATC 2 cut(s) 132, 352
MboII GAAGA 3 cut(s) 97, 116, 397
MflI RGATCY 1 cut(s) 352
MnlI CCTC 3 cut(s) 199, 276, 448
Mph1103I ATGCAT 1 cut(s) 52
MslI CAYNNNNRTG 1 cut(s) 64
MspR9I CCNGG 1 cut(s) 250
MvaI CCWGG 1 cut(s) 250
MwoI GCNNNNNNNGC 3 cut(s) 56, 215, 495
NdeI CATATG 1 cut(s) 289
NdeII GATC 2 cut(s) 132, 352
NlaIII CATG 3 cut(s) 189, 199, 427
NmeAIII GCCGAG 1 cut(s) 487
NsiI ATGCAT 1 cut(s) 52
PkrI GCNGC 5 cut(s) 192, 430, 457, 460, 491
Psp6I CCWGG 1 cut(s) 248
PspGI CCWGG 1 cut(s) 248
PsuI RGATCY 1 cut(s) 352
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
RseI CAYNNNNRTG 1 cut(s) 64
SatI GCNGC 5 cut(s) 191, 429, 456, 459, 490
Sau3AI GATC 2 cut(s) 132, 352
ScrFI CCNGG 1 cut(s) 250
SetI ASST 3 cut(s) 14, 116, 216
SmiMI CAYNNNNRTG 1 cut(s) 64
SsiI CCGC 2 cut(s) 456, 489
StyD4I CCNGG 1 cut(s) 248
StyI CCWWGG 1 cut(s) 415
TaaI ACNGT 1 cut(s) 154
TaqI TCGA 2 cut(s) 296, 482
TauI GCSGC 2 cut(s) 458, 492
TseI GCWGC 3 cut(s) 190, 428, 458
TspDTI ATGAA 3 cut(s) 174, 214, 485
Zsp2I ATGCAT 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.