Rmu_co8097434.1_g000001

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8097434.1
OG0010737
Physical Location & Seq
Forward (+)
1 .. 412
412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8097434.1_g000001.1.cds

Sequence Viewer

Length: 282 bp
ggaacagggtacatatacaagaccctgttgaggccttatgtatcaaagcatgaaacagacattgacaggaaaatactggagatgagagcaagggcatgggatctgaccgttttctactggcaaaacttcgcccaatatgggcagacagctttcttccaattcctgaattacatggctgctcaatcatcgaaaatgaccaaagccacagctgagccggtgaatgttcagtcgaatggctccgctgcaagcacaaagccgaatggcgcttcaaaagatgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

93

Amino Acids

10.54

Weight (kDa)

9.26

Isoelectric Point (pI)

29.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010737)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42560 AT5G42560 AT5G42560
fragaria_vesca FvH4_6g19930
malus_domestica MD12G1036900.v1.1 MD14G1034500.v1.1 MD14G1035900.v1.1
prunus_persica Prupe.7G098200_v2.0.a1
pyrus_communis pycom14g03170
rosa_chinensis RchiOBHm_Chr3g0475331
rosa_laevigata RLG00000023851
rosa_multiflora Rmu_co8097434.1_g000001 Rmu_ssc0000140.1_g000014
rosa_roxburghii Rroxscaffold_6G00406380
rosa_rugosa Rorug03G0148200
rosa_samantha Rh3AG198100 Rh3BG228300 Rh3CG222600 Rh3DG223500
rosa_wichuraiana Rw3G018000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 240
AclWI GGATC 1 cut(s) 108
AfaI GTAC 1 cut(s) 11
AfiI CCNNNNNNNGG 2 cut(s) 30, 138
AgsI TTSAA 1 cut(s) 270
AluBI AGCT 2 cut(s) 149, 209
AluI AGCT 2 cut(s) 149, 209
AlwI GGATC 1 cut(s) 108
AoxI GGCC 1 cut(s) 32
ApeKI GCWGC 2 cut(s) 176, 242
AspLEI GCGC 1 cut(s) 266
AsuHPI GGTGA 1 cut(s) 229
BbvI GCAGC 2 cut(s) 163, 229
BfoI RGCGCY 1 cut(s) 267
BisI GCNGC 2 cut(s) 177, 243
BlpI GCTNAGC 1 cut(s) 210
BlsI GCNGC 2 cut(s) 178, 244
BmiI GGNNCC 1 cut(s) 238
BpmI CTGGAG 1 cut(s) 98
Bpu1102I GCTNAGC 1 cut(s) 210
Bsc4I CCNNNNNNNGG 2 cut(s) 30, 138
Bse118I RCCGGY 1 cut(s) 214
Bse1I ACTGG 2 cut(s) 81, 122
BseLI CCNNNNNNNGG 2 cut(s) 30, 138
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 2 cut(s) 81, 122
BseXI GCAGC 2 cut(s) 163, 229
BshFI GGCC 1 cut(s) 34
BsiSI CCGG 1 cut(s) 215
BslI CCNNNNNNNGG 2 cut(s) 30, 138
BsnI GGCC 1 cut(s) 34
Bsp143I GATC 1 cut(s) 100
Bsp1720I GCTNAGC 1 cut(s) 210
BspACI CCGC 1 cut(s) 240
BspANI GGCC 1 cut(s) 34
BspCNI CTCAG 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 238
BspPI GGATC 1 cut(s) 108
BsrFI RCCGGY 1 cut(s) 214
BsrI ACTGG 2 cut(s) 81, 122
BssAI RCCGGY 1 cut(s) 214
BssMI GATC 1 cut(s) 100
Bst4CI ACNGT 1 cut(s) 109
BstC8I GCNNGC 1 cut(s) 247
BstDEI CTNAG 1 cut(s) 210
BstH2I RGCGCY 1 cut(s) 267
BstHHI GCGC 1 cut(s) 266
BstKTI GATC 1 cut(s) 103
BstMBI GATC 1 cut(s) 100
BstV1I GCAGC 2 cut(s) 163, 229
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BsuRI GGCC 1 cut(s) 34
Cac8I GCNNGC 1 cut(s) 247
CfoI GCGC 1 cut(s) 266
Cfr10I RCCGGY 1 cut(s) 214
Csp6I GTAC 1 cut(s) 10
CviAII CATG 3 cut(s) 50, 96, 172
CviJI RGCY 8 cut(s) 34, 149, 176, 203, 209, 214, 237, 256
CviKI_1 RGCY 8 cut(s) 34, 149, 176, 203, 209, 214, 237, 256
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 1 cut(s) 210
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
Eco147I AGGCCT 1 cut(s) 34
FaeI CATG 3 cut(s) 53, 99, 175
FaiI YATR 7 cut(s) 14, 16, 39, 51, 97, 138, 173
FatI CATG 3 cut(s) 49, 95, 171
Fnu4HI GCNGC 2 cut(s) 177, 243
Fsp4HI GCNGC 2 cut(s) 177, 243
GlaI GCGC 1 cut(s) 265
GluI GCNGC 2 cut(s) 177, 243
GsuI CTGGAG 1 cut(s) 98
HaeII RGCGCY 1 cut(s) 267
HaeIII GGCC 1 cut(s) 34
HapII CCGG 1 cut(s) 215
HhaI GCGC 1 cut(s) 266
Hin1II CATG 3 cut(s) 53, 99, 175
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
HpaII CCGG 1 cut(s) 215
HphI GGTGA 1 cut(s) 229
Hpy188I TCNGA 1 cut(s) 105
Hpy188III TCNNGA 1 cut(s) 163
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4V TGCA 1 cut(s) 245
HpyF3I CTNAG 1 cut(s) 210
Hsp92II CATG 3 cut(s) 53, 99, 175
HspAI GCGC 1 cut(s) 264
Kzo9I GATC 1 cut(s) 100
LmnI GCTCC 1 cut(s) 242
LpnPI CCDG 6 cut(s) 38, 52, 62, 103, 176, 228
Lsp1109I GCAGC 2 cut(s) 163, 229
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 1 cut(s) 145
MflI RGATCY 1 cut(s) 100
MluCI AATT 2 cut(s) 158, 166
MnlI CCTC 1 cut(s) 24
MspA1I CMGCKG 2 cut(s) 209, 242
MspI CCGG 1 cut(s) 215
NdeII GATC 1 cut(s) 100
NlaIII CATG 3 cut(s) 53, 99, 175
NlaIV GGNNCC 1 cut(s) 238
PceI AGGCCT 1 cut(s) 34
PkrI GCNGC 2 cut(s) 178, 244
PspN4I GGNNCC 1 cut(s) 238
PsuI RGATCY 1 cut(s) 100
PvuII CAGCTG 1 cut(s) 209
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
SatI GCNGC 2 cut(s) 177, 243
Sau3AI GATC 1 cut(s) 100
SetI ASST 2 cut(s) 151, 211
Sse9I AATT 2 cut(s) 158, 166
SseBI AGGCCT 1 cut(s) 34
SsiI CCGC 1 cut(s) 240
StuI AGGCCT 1 cut(s) 34
TaaI ACNGT 1 cut(s) 109
TaqI TCGA 2 cut(s) 188, 230
TasI AATT 2 cut(s) 158, 166
TseI GCWGC 2 cut(s) 176, 242
TspDTI ATGAA 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.