Rorug03G0148200

UPF0554 protein C2orf43 homolog

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
12181331 .. 12186603
5273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0148200.1

Sequence Viewer

Length: 2970 bp
ATGGAGAAGTTGCGGCCAACGAGGTCCAAGATTTCGAGCTTTTCTGATCGGAGAAGCTCCGGCGAGAGATTCGCCTCCAAAGAACGAGCTTCCTCACGAGGAAACAGGCAAGTTCAGAAGCAGAAGAAATTGGGCTCTGATTCTAGCTCTTGCAGTAGTGGCTCTACAGGGGAAGATCCGTTGACGTTTGAGTTGGGGTGGAGATCTTCAAAGCAAGCTGTTGGAGCTCCAATAAAGAAATTATTAGCTGAGGAGATGTTGAGAGAAACTGAATCCAGAAGGAGATCACCAAGTGTTATTGCCAAATTGATGGGTCTTGATGGGATGCCACCCCAACAGCCCATCACTCATAAACAACAAAAAGGGATTCTGGAGAATCGTCATCAGAGGACAAGATCAGTAGAGAAAGAGCACAGAAGTGGCGTGTGTTATGACCACCGGTCATCTAGGAAGAACTCAAAGGAGCAGCAGGAATTTAAGGATGTGTTTGAAGTTTTGGAAACTTCCAAGGTGGAAAGTTGTAGTTACTCATCACGAGCAGCTGCTAACACCAAGCTCAGTGATGCAGAGATGGCTTTTGTTCAACAGAAGTTCATGGATGCTAAACGACTTTCAACTGATGAGAAGCTACAAGATTCAAAGGAATTCCATGATGCCCTTGAGGTGTTGGATTCTAACAAGGATCTTCTGTTGAAATTTCTTCAGCAACCAGACTCATTGTTCACAAAGCATCTGAATGATCTGCATACTGGTCCCCAATCCCGTTGTGGCCGAGTAGCATCAATGAAGTCATCAGAAGCTCAGAAGTATGAGAAAATTGACCTCGGCTGGACATCAGCAAGAGAAAGGAATTACTGTAAATCTCCTCAGAGGCATCGTGATTCTTTTTCTAGCTACTCTGATAGTAGACATGCTACTCGTTATTCTCTCAAGTCATCACAATACCGATCAGAAGCAAAACATGAAACTGCCATTACTCCCACAAGGATAGTTGTTCTGAAGCCAAACCTTGGGAAGTTACTGAATGCTACCAAAACTGTTTCATCACCCTGTTCTTCTCAAGCTTCTATGTCAGTTTGTAGGAACCGCTCAGATTTTCCTAGCATTGGAAATAGGGAGGGCGATACATGGGGAAATAAAAACTTCCCAGATAATGAAGGGCAGTCAAGGCATAAGTCTAGAGAATCTAGAGAAGTGGCTAAGGAAATTACAAGACAAATGAGAAATAACTTCAGCATCGGTTCTGTGCAATTTTCATCATCTGGATTTAAAGGATATGCTGGTGATGAGAGTTCTTGTAGCATTTCAGAGAATGAATCAGGAAATGAATCGGAGGTGATTTCAGTGGCTTCCAAACAATCCTTTGACATACATAACCACTCCAGGCGCTCATCAACCTGCTCTACTGAATCTTCTGTAAGTAGAGAGGCCAAGAAGAGACTCTCGGAGAGGTGGAAAATGACTCATATGTCCCAGGAAGTGGGAGTGGCTAGCAGGGGCAGCACACTTGCTGAAATGCTTGCTATCCCAGACAAGGAAACGCAAGCCGCAAAACTGGATGCCATGAAAGGTGAGGCAGGATTCAGAGATAAATTTGCAAGAGAAGATGGACCTGTAGGGTGGGGTGGACCTCTTGGTATCAGCAGTAGGGATGGCTGGAAGGATGGATGCATCGCAAGTTTATCAAGATCGAAATCTCTCCCTGCTTCTTCTAGTGCATTTGGGAGTTATAAGACAAGTATGCGCCGGGAAACCATACGTGATGACAGGTATCTGATACCAGCCGAGGCATTCAAGCATAAAAGAAACCAATCAGTAGTTGATTTTGATCATAGAGAAGGTGGGCCCAGAAACTATAGATCCAGGAATAAAAGATCTTATAGTTCTCGCTCCTTAAGTAGGGAAAGTATGGACATTTCACCTGAAACTCCTAATACTCCTGATGGAGTAAGAACTTATCCTGAAGAGAACAAGCAATACCAGCAGAACGTGGCTGTTGTGGAGTCATCATCTGGTAATGGCATAGATGCTAGTCCAGCTTCAGTAAAGTTGGTGGATGTGGATGTATCCATGTCTTCTGAAACACCCGATGCATTCCCTCCAGAATTATCAGCCCGCATGTCGGTGGAAGGCGATTCCTGTAGCAGTCACCAAGATAGCCCAATTGCAGAGGAACCATCAACTAGACCATCTGATGAAAAGTCAGTTCCGTCTGAACACTCTGTACCTGGTATAGAATCTCTTGCAAGCTCTAAAGAGGCTGATCAGCCCAGTCCGGTTTCAGTTCTGGAAGTTCCTTTTATTGATGATGTGTCATCTTCTTCTGACTGCTTTGAGACTCTCAGCGCTGACCTGCAAGGGCTTCGGATGCAGCTTCAGCTACTCAAGTTGGAATCGGATTCATATGCAGAGGGATCCATGCTAATCTCAAGTGATGAAGATGCAGGAGAAGGATCTACTTGGTTTCGGGATGCAATATGTAGGGAAGAAGAGAGCTGGGAGTCTTCATACATGGTTGATATGTTAAACGAATCAGGTTTAAACAATGCCAACCATGAGACCTTCTTGGCTACATGGCACACTCCAGAGTGTCCAGTGAGTCCTCTACTATTTGAAGAGCTGGAGAAAAAGTATTGTGACCAGACTTCTTGTCCAAAATCGGAAAGGAAATTACTGTTTGACCGAATAAATTCAGGACTTCTGGAGATGTTTCAGCAATTCACTGATCCTCACCCATGGGTTAGACGTATGAAGATAACGGTTGGCCCAAAGTGGATTAACAAAACTGTCCTCCAAGATGGTCTCCGTAAGTTGCTGGCTAGTGAAGAGAAAGCCAATGAGGAGAGTTTGGACAAACTGCTGGAAAGGGACTCGCTGTGGTCGCATTTCGGAGACTACATTGACATAATAGGTAGGGAAGTAGAGAAGTCGTTGTTAGATGAGTTAGTTGCAGAGGTAGTGGTTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

989

Amino Acids

110.72

Weight (kDa)

6.4

Isoelectric Point (pI)

63.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VARLMGL PF14383 92 - 113 3.6e-07 DUF761-associated sequence motif
DUF3741 PF12552 195 - 239 7.2e-22 Protein of unknown function (DUF3741)
DUF4378 PF14309 835 - 985 4.4e-32 Domain of unknown function (DUF4378)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1731
AasI GACNNNNNNGTC 1 cut(s) 1468
Acc36I ACCTGC 2 cut(s) 1406, 2361
AccB7I CCANNNNNTGG 2 cut(s) 1010, 1480
AccBSI CCGCTC 1 cut(s) 1089
AccI GTMKAC 1 cut(s) 907
AciI CCGC 4 cut(s) 13, 1087, 1548, 2116
AclWI GGATC 7 cut(s) 170, 690, 1854, 2409, 2422, 2461, 2720
AcoI YGGCCR 2 cut(s) 14, 769
AcsI RAATTY 5 cut(s) 473, 644, 695, 1592, 2689
AcuI CTGAAG 6 cut(s) 686, 1019, 1216, 1983, 2025, 2360
AdeI CACNNNGTG 1 cut(s) 293
AfaI GTAC 1 cut(s) 2226
AfeI AGCGCT 1 cut(s) 2347
AfiI CCNNNNNNNGG 6 cut(s) 1010, 1106, 1480, 1534, 1899, 2122
AflII CTTAAG 1 cut(s) 1894
AgeI ACCGGT 1 cut(s) 438
AgsI TTSAA 8 cut(s) 210, 491, 584, 615, 639, 694, 1795, 2615
AhdI GACNNNNNGTC 2 cut(s) 439, 2649
AjnI CCWGG 4 cut(s) 1382, 1473, 1862, 2227
AleI CACNNNNGTG 1 cut(s) 417
Alw21I GWGCWC 2 cut(s) 229, 414
Alw26I GTCTC 5 cut(s) 1432, 2330, 2552, 2807, 2886
AlwI GGATC 7 cut(s) 170, 690, 1854, 2409, 2422, 2461, 2720
Aor51HI AGCGCT 1 cut(s) 2347
AoxI GGCC 5 cut(s) 14, 769, 1428, 1844, 2764
ApaI GGGCCC 1 cut(s) 1848
ApeKI GCWGC 5 cut(s) 466, 539, 542, 1500, 2371
ApoI RAATTY 5 cut(s) 473, 644, 695, 1592, 2689
AsiGI ACCGGT 1 cut(s) 438
Asp700I GAANNNNTTC 1 cut(s) 2689
AspLEI GCGC 3 cut(s) 1389, 1746, 2348
AspS9I GGNCC 7 cut(s) 24, 752, 1610, 1628, 1844, 1845, 2765
AsuC2I CCSGG 1 cut(s) 1748
AsuHPI GGTGA 8 cut(s) 279, 1038, 1295, 1348, 1583, 1911, 2141, 2723
AsuNHI GCTAGC 1 cut(s) 1490
AvaII GGWCC 4 cut(s) 24, 752, 1610, 1628
BaeGI GKGCMC 1 cut(s) 1848
BamHI GGATCC 1 cut(s) 2414
BanII GRGCYC 3 cut(s) 137, 229, 1848
BauI CACGAG 2 cut(s) 96, 534
BbsI GAAGAC 2 cut(s) 2067, 2496
Bbv12I GWGCWC 2 cut(s) 229, 414
BbvCI CCTCAGC 1 cut(s) 249
BbvI GCAGC 5 cut(s) 478, 529, 551, 1512, 2383
BcgI CGANNNNNNTGC 2 cut(s) 2345, 2379
BciT130I CCWGG 4 cut(s) 1384, 1475, 1864, 2229
BciVI GTATCC 1 cut(s) 2077
BclI TGATCA 2 cut(s) 1828, 2263
BcnI CCSGG 1 cut(s) 1748
BcoDI GTCTC 5 cut(s) 1432, 2330, 2552, 2807, 2886
BfmI CTRYAG 4 cut(s) 165, 1614, 1855, 2140
BfoI RGCGCY 2 cut(s) 1390, 2349
BfrI CTTAAG 1 cut(s) 1894
BfuAI ACCTGC 2 cut(s) 1406, 2361
BfuI GTATCC 1 cut(s) 2077
BglII AGATCT 2 cut(s) 203, 1874
BisI GCNGC 7 cut(s) 14, 467, 540, 543, 1501, 1548, 2372
BlsI GCNGC 7 cut(s) 15, 468, 541, 544, 1502, 1549, 2373
Bme1390I CCNGG 5 cut(s) 1384, 1475, 1748, 1864, 2229
Bme18I GGWCC 4 cut(s) 24, 752, 1610, 1628
BmeRI GACNNNNNGTC 2 cut(s) 439, 2649
BmgT120I GGNCC 7 cut(s) 24, 752, 1610, 1628, 1844, 1845, 2765
BmiI GGNNCC 5 cut(s) 754, 1085, 1846, 2175, 2416
BmrFI CCNGG 5 cut(s) 1384, 1475, 1748, 1864, 2229
BmrI ACTGGG 1 cut(s) 2265
BmtI GCTAGC 1 cut(s) 1494
BmuI ACTGGG 1 cut(s) 2265
BpiI GAAGAC 2 cut(s) 2067, 2496
BpmI CTGGAG 6 cut(s) 392, 1366, 2085, 2568, 2642, 2723
Bpu10I CCTNAGC 2 cut(s) 249, 1200
BpuEI CTTGAG 5 cut(s) 680, 914, 1044, 2369, 2413
BpuMI CCSGG 1 cut(s) 1748
BsaAI YACGTR 1 cut(s) 1760
BsaBI GATNNNNATC 2 cut(s) 1693, 1827
BsaI GGTCTC 2 cut(s) 2552, 2807
BsaJI CCNNGG 6 cut(s) 507, 823, 1009, 1473, 1785, 2735
BsaWI WCCGGW 2 cut(s) 438, 2275
BsaXI ACNNNNNCTCC 2 cut(s) 2615, 2645
Bsc4I CCNNNNNNNGG 6 cut(s) 1010, 1106, 1480, 1534, 1899, 2122
Bse118I RCCGGY 1 cut(s) 438
Bse1I ACTGG 4 cut(s) 754, 1560, 2271, 2594
Bse8I GATNNNNATC 2 cut(s) 1693, 1827
BseBI CCWGG 4 cut(s) 1384, 1475, 1864, 2229
BseDI CCNNGG 6 cut(s) 507, 823, 1009, 1473, 1785, 2735
BseJI GATNNNNATC 2 cut(s) 1693, 1827
BseLI CCNNNNNNNGG 6 cut(s) 1010, 1106, 1480, 1534, 1899, 2122
BseMII CTCAG 6 cut(s) 240, 571, 815, 881, 1104, 2356
BseNI ACTGG 4 cut(s) 754, 1560, 2271, 2594
BseRI GAGGAG 3 cut(s) 266, 855, 2855
BseSI GKGCMC 1 cut(s) 1848
BseXI GCAGC 5 cut(s) 478, 529, 551, 1512, 2383
BseYI CCCAGC 1 cut(s) 2496
BshFI GGCC 5 cut(s) 16, 771, 1430, 1846, 2766
BshTI ACCGGT 1 cut(s) 438
BsiHKAI GWGCWC 2 cut(s) 229, 414
BsiSI CCGG 4 cut(s) 60, 439, 1747, 2276
BslFI GGGAC 3 cut(s) 738, 1456, 2882
BslI CCNNNNNNNGG 6 cut(s) 1010, 1106, 1480, 1534, 1899, 2122
BsmAI GTCTC 5 cut(s) 1432, 2330, 2552, 2807, 2886
BsmFI GGGAC 3 cut(s) 738, 1456, 2882
BsmI GAATGC 3 cut(s) 1030, 1790, 2093
BsnI GGCC 5 cut(s) 16, 771, 1430, 1846, 2766
Bso31I GGTCTC 2 cut(s) 2552, 2807
Bsp120I GGGCCC 1 cut(s) 1844
Bsp1286I GDGCHC 4 cut(s) 137, 229, 414, 1848
Bsp19I CCATGG 1 cut(s) 2735
BspACI CCGC 4 cut(s) 13, 1087, 1548, 2116
BspANI GGCC 5 cut(s) 16, 771, 1430, 1846, 2766
BspCNI CTCAG 6 cut(s) 241, 570, 814, 880, 1103, 2355
BspLI GGNNCC 5 cut(s) 754, 1085, 1846, 2175, 2416
BspMI ACCTGC 2 cut(s) 1406, 2361
BspOI GCTAGC 1 cut(s) 1494
BspPI GGATC 7 cut(s) 170, 690, 1854, 2409, 2422, 2461, 2720
BspQI GCTCTTC 1 cut(s) 2610
BspTI CTTAAG 1 cut(s) 1894
BspTNI GGTCTC 2 cut(s) 2552, 2807
BsrBI CCGCTC 1 cut(s) 1089
BsrFI RCCGGY 1 cut(s) 438
BsrI ACTGG 4 cut(s) 754, 1560, 2271, 2594
BssAI RCCGGY 1 cut(s) 438
BssECI CCNNGG 6 cut(s) 507, 823, 1009, 1473, 1785, 2735
BssSI CACGAG 2 cut(s) 96, 534
BssT1I CCWWGG 3 cut(s) 507, 1009, 2735
Bst2BI CACGAG 2 cut(s) 96, 534
Bst2UI CCWGG 4 cut(s) 1384, 1475, 1864, 2229
Bst4CI ACNGT 5 cut(s) 857, 1039, 2676, 2761, 2788
Bst6I CTCTTC 5 cut(s) 1430, 1959, 2484, 2610, 2820
BstAFI CTTAAG 1 cut(s) 1894
BstBAI YACGTR 1 cut(s) 1760
BstC8I GCNNGC 7 cut(s) 216, 1492, 1521, 1545, 2116, 2248, 2817
BstDEI CTNAG 7 cut(s) 249, 557, 801, 867, 1090, 1200, 2342
BstDSI CCRYGG 1 cut(s) 2735
BstENI CCTNNNNNAGG 1 cut(s) 1897
BstH2I RGCGCY 2 cut(s) 1390, 2349
BstHHI GCGC 3 cut(s) 1389, 1746, 2348
BstMAI GTCTC 5 cut(s) 1432, 2330, 2552, 2807, 2886
BstNI CCWGG 4 cut(s) 1384, 1475, 1864, 2229
BstNSI RCATGY 2 cut(s) 914, 2122
BstSCI CCNGG 5 cut(s) 1382, 1473, 1746, 1862, 2227
BstSFI CTRYAG 4 cut(s) 165, 1614, 1855, 2140
BstSLI GKGCMC 1 cut(s) 1848
BstV1I GCAGC 5 cut(s) 478, 529, 551, 1512, 2383
BstV2I GAAGAC 2 cut(s) 2067, 2496
BstX2I RGATCY 7 cut(s) 175, 203, 682, 1859, 1874, 2414, 2453
BstXI CCANNNNNNTGG 1 cut(s) 310
BstYI RGATCY 7 cut(s) 175, 203, 682, 1859, 1874, 2414, 2453
BsuI GTATCC 1 cut(s) 2077
BsuRI GGCC 5 cut(s) 16, 771, 1430, 1846, 2766
BtgI CCRYGG 1 cut(s) 2735
BtgZI GCGATG 1 cut(s) 1657
BtsIMutI CAGTG 4 cut(s) 565, 1350, 2601, 2721
BveI ACCTGC 2 cut(s) 1406, 2361
Cac8I GCNNGC 7 cut(s) 216, 1492, 1521, 1545, 2116, 2248, 2817
CfoI GCGC 3 cut(s) 1389, 1746, 2348
Cfr10I RCCGGY 1 cut(s) 438
Cfr13I GGNCC 7 cut(s) 24, 752, 1610, 1628, 1844, 1845, 2765
CsiI ACCWGGT 1 cut(s) 2227
Csp6I GTAC 1 cut(s) 2225
CspAI ACCGGT 1 cut(s) 438
CviQI GTAC 1 cut(s) 2225
DdeI CTNAG 7 cut(s) 249, 557, 801, 867, 1090, 1200, 2342
DraI TTTAAA 2 cut(s) 1270, 2541
DraIII CACNNNGTG 1 cut(s) 293
DrdI GACNNNNNNGTC 1 cut(s) 1468
DriI GACNNNNNGTC 2 cut(s) 439, 2649
DseDI GACNNNNNNGTC 1 cut(s) 1468
EaeI YGGCCR 2 cut(s) 14, 769
Eam1104I CTCTTC 5 cut(s) 1430, 1959, 2484, 2610, 2820
Eam1105I GACNNNNNGTC 2 cut(s) 439, 2649
EarI CTCTTC 5 cut(s) 1430, 1959, 2484, 2610, 2820
Ecl136II GAGCTC 1 cut(s) 227
Eco130I CCWWGG 3 cut(s) 507, 1009, 2735
Eco24I GRGCYC 3 cut(s) 137, 229, 1848
Eco31I GGTCTC 2 cut(s) 2552, 2807
Eco47I GGWCC 4 cut(s) 24, 752, 1610, 1628
Eco47III AGCGCT 1 cut(s) 2347
Eco53kI GAGCTC 1 cut(s) 227
Eco57I CTGAAG 6 cut(s) 686, 1019, 1216, 1983, 2025, 2360
EcoICRI GAGCTC 1 cut(s) 227
EcoNI CCTNNNNNAGG 1 cut(s) 1897
EcoRI GAATTC 1 cut(s) 644
EcoRII CCWGG 4 cut(s) 1382, 1473, 1862, 2227
EcoT14I CCWWGG 3 cut(s) 507, 1009, 2735
EcoT22I ATGCAT 2 cut(s) 1673, 2095
EcoT38I GRGCYC 3 cut(s) 137, 229, 1848
ErhI CCWWGG 3 cut(s) 507, 1009, 2735
FaqI GGGAC 3 cut(s) 738, 1456, 2882
FauI CCCGC 1 cut(s) 2123
FauNDI CATATG 2 cut(s) 1467, 2404
FbaI TGATCA 2 cut(s) 1828, 2263
FblI GTMKAC 1 cut(s) 907
Fnu4HI GCNGC 7 cut(s) 14, 467, 540, 543, 1501, 1548, 2372
FriOI GRGCYC 3 cut(s) 137, 229, 1848
Fsp4HI GCNGC 7 cut(s) 14, 467, 540, 543, 1501, 1548, 2372
GlaI GCGC 3 cut(s) 1388, 1745, 2347
GluI GCNGC 7 cut(s) 14, 467, 540, 543, 1501, 1548, 2372
GsaI CCCAGC 1 cut(s) 2500
GsuI CTGGAG 6 cut(s) 392, 1366, 2085, 2568, 2642, 2723
HaeII RGCGCY 2 cut(s) 1390, 2349
HaeIII GGCC 5 cut(s) 16, 771, 1430, 1846, 2766
HapII CCGG 4 cut(s) 60, 439, 1747, 2276
HhaI GCGC 3 cut(s) 1389, 1746, 2348
Hin6I GCGC 3 cut(s) 1387, 1744, 2346
HinP1I GCGC 3 cut(s) 1387, 1744, 2346
HincII GTYRAC 1 cut(s) 183
HindII GTYRAC 1 cut(s) 183
HindIII AAGCTT 1 cut(s) 1062
HpaII CCGG 4 cut(s) 60, 439, 1747, 2276
HphI GGTGA 8 cut(s) 279, 1038, 1295, 1348, 1583, 1911, 2141, 2723
Hpy166II GTNNAC 4 cut(s) 183, 723, 908, 1628
Hpy8I GTNNAC 4 cut(s) 183, 723, 908, 1628
HpyAV CCTTC 7 cut(s) 273, 1151, 1654, 1832, 2123, 2444, 2572
HpyCH4III ACNGT 5 cut(s) 857, 1039, 2676, 2761, 2788
HpyCH4IV ACGT 4 cut(s) 185, 1759, 1989, 2746
HpyF3I CTNAG 7 cut(s) 249, 557, 801, 867, 1090, 1200, 2342
HpySE526I ACGT 4 cut(s) 185, 1759, 1989, 2746
HspAI GCGC 3 cut(s) 1387, 1744, 2346
Ksp22I TGATCA 2 cut(s) 1828, 2263
LguI GCTCTTC 1 cut(s) 2610
LmnI GCTCC 5 cut(s) 62, 224, 232, 463, 1895
Lsp1109I GCAGC 5 cut(s) 478, 529, 551, 1512, 2383
MabI ACCWGGT 1 cut(s) 2227
MaeII ACGT 4 cut(s) 185, 1759, 1989, 2746
MaeIII GTNAC 4 cut(s) 524, 1017, 2147, 2636
MbiI CCGCTC 1 cut(s) 1089
MfeI CAATTG 1 cut(s) 2163
MflI RGATCY 7 cut(s) 175, 203, 682, 1859, 1874, 2414, 2453
MhlI GDGCHC 4 cut(s) 137, 229, 414, 1848
MlyI GAGTC 8 cut(s) 707, 1434, 1456, 2012, 2332, 2510, 2608, 2864
MmeI TCCRAC 3 cut(s) 202, 648, 2370
Mph1103I ATGCAT 2 cut(s) 1673, 2095
MroXI GAANNNNTTC 1 cut(s) 2689
MseI TTAA 6 cut(s) 477, 1269, 1895, 2525, 2540, 2778
MslI CAYNNNNRTG 3 cut(s) 417, 735, 2123
MspA1I CMGCKG 1 cut(s) 542
MspCI CTTAAG 1 cut(s) 1894
MspI CCGG 4 cut(s) 60, 439, 1747, 2276
MspR9I CCNGG 5 cut(s) 1384, 1475, 1748, 1864, 2229
MssI GTTTAAAC 1 cut(s) 2541
MunI CAATTG 1 cut(s) 2163
Mva1269I GAATGC 3 cut(s) 1030, 1790, 2093
MvaI CCWGG 4 cut(s) 1384, 1475, 1864, 2229
NciI CCSGG 1 cut(s) 1748
NcoI CCATGG 1 cut(s) 2735
NdeI CATATG 2 cut(s) 1467, 2404
NheI GCTAGC 1 cut(s) 1490
NlaIV GGNNCC 5 cut(s) 754, 1085, 1846, 2175, 2416
NmeAIII GCCGAG 3 cut(s) 797, 804, 1810
NmuCI GTSAC 2 cut(s) 2147, 2636
NsiI ATGCAT 2 cut(s) 1673, 2095
NspI RCATGY 2 cut(s) 914, 2122
OliI CACNNNNGTG 1 cut(s) 417
PciSI GCTCTTC 1 cut(s) 2610
PctI GAATGC 3 cut(s) 1030, 1790, 2093
PdmI GAANNNNTTC 1 cut(s) 2689
PflMI CCANNNNNTGG 2 cut(s) 1010, 1480
PfoI TCCNGGA 1 cut(s) 1862
PinAI ACCGGT 1 cut(s) 438
PkrI GCNGC 7 cut(s) 15, 468, 541, 544, 1502, 1549, 2373
PleI GAGTC 8 cut(s) 707, 1434, 1456, 2011, 2332, 2509, 2607, 2864
PmeI GTTTAAAC 1 cut(s) 2541
PpsI GAGTC 8 cut(s) 707, 1434, 1456, 2011, 2332, 2509, 2607, 2864
Ppu21I YACGTR 1 cut(s) 1760
PsiI TTATAA 1 cut(s) 1731
Psp124BI GAGCTC 1 cut(s) 229
Psp6I CCWGG 4 cut(s) 1382, 1473, 1862, 2227
PspFI CCCAGC 1 cut(s) 2496
PspGI CCWGG 4 cut(s) 1382, 1473, 1862, 2227
PspN4I GGNNCC 5 cut(s) 754, 1085, 1846, 2175, 2416
PspOMI GGGCCC 1 cut(s) 1844
PspPI GGNCC 7 cut(s) 24, 752, 1610, 1628, 1844, 1845, 2765
PsrI GAACNNNNNNTAC 4 cut(s) 1961, 1993, 2208, 2240
PsuI RGATCY 7 cut(s) 175, 203, 682, 1859, 1874, 2414, 2453
PvuII CAGCTG 1 cut(s) 542
RsaI GTAC 1 cut(s) 2226
RsaNI GTAC 1 cut(s) 2225
RseI CAYNNNNRTG 3 cut(s) 417, 735, 2123
SacI GAGCTC 1 cut(s) 229
SapI GCTCTTC 1 cut(s) 2610
SaqAI TTAA 6 cut(s) 477, 1269, 1895, 2525, 2540, 2778
SatI GCNGC 7 cut(s) 14, 467, 540, 543, 1501, 1548, 2372
Sau96I GGNCC 7 cut(s) 24, 752, 1610, 1628, 1844, 1845, 2765
SchI GAGTC 8 cut(s) 707, 1434, 1456, 2012, 2332, 2510, 2608, 2864
ScrFI CCNGG 5 cut(s) 1384, 1475, 1748, 1864, 2229
SduI GDGCHC 4 cut(s) 137, 229, 414, 1848
SexAI ACCWGGT 1 cut(s) 2227
SfcI CTRYAG 4 cut(s) 165, 1614, 1855, 2140
SinI GGWCC 4 cut(s) 24, 752, 1610, 1628
SmiMI CAYNNNNRTG 3 cut(s) 417, 735, 2123
SmlI CTYRAG 6 cut(s) 659, 929, 1059, 1894, 2384, 2428
SmoI CTYRAG 6 cut(s) 659, 929, 1059, 1894, 2384, 2428
SsiI CCGC 4 cut(s) 13, 1087, 1548, 2116
SstI GAGCTC 1 cut(s) 229
StyD4I CCNGG 5 cut(s) 1382, 1473, 1746, 1862, 2227
StyI CCWWGG 3 cut(s) 507, 1009, 2735
TaaI ACNGT 5 cut(s) 857, 1039, 2676, 2761, 2788
TaiI ACGT 4 cut(s) 188, 1762, 1992, 2749
TaqI TCGA 2 cut(s) 35, 1691
TaqII GACCGA 1 cut(s) 2697
TauI GCSGC 2 cut(s) 16, 1550
Tru1I TTAA 6 cut(s) 477, 1269, 1895, 2525, 2540, 2778
Tru9I TTAA 6 cut(s) 477, 1269, 1895, 2525, 2540, 2778
TscAI CASTG 4 cut(s) 565, 1350, 2601, 2728
TseFI GTSAC 2 cut(s) 2147, 2636
TseI GCWGC 5 cut(s) 466, 539, 542, 1500, 2371
Tsp45I GTSAC 2 cut(s) 2147, 2636
TspGWI ACGGA 3 cut(s) 168, 2199, 2795
TspRI CASTG 4 cut(s) 565, 1350, 2601, 2728
Van91I CCANNNNNTGG 2 cut(s) 1010, 1480
Vha464I CTTAAG 1 cut(s) 1894
VpaK11BI GGWCC 4 cut(s) 24, 752, 1610, 1628
XagI CCTNNNNNAGG 1 cut(s) 1897
XapI RAATTY 5 cut(s) 473, 644, 695, 1592, 2689
XbaI TCTAGA 2 cut(s) 1178, 1187
XceI RCATGY 2 cut(s) 914, 2122
XcmI CCANNNNNNNNNTGG 1 cut(s) 764
XmiI GTMKAC 1 cut(s) 907
XmnI GAANNNNTTC 1 cut(s) 2689
Zsp2I ATGCAT 2 cut(s) 1673, 2095
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.