Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0002532

Physical Location & Seq

Genomic Coordinates Reverse (-)

3223297 .. 3229515

Gene Structure 6219 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1035800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGCTTCTTCGACTCTTTCCTTCCATTAGCCCACCTCTCTCACTCACCACCGGTTTCAGATATATAAGGCCAAGGGCAAGCTACAGATTATACCGTGGAAGCAGAGAAATGGGTGAGCAGGAAAATTCAGAATCTGAAGTAATTCAAGTGAAGAATCGTGCCACATTTCGTCTGTGCAATGTGTCAAGTTTCACCACTGAAGTACTGGAGATCCCTGCAGACAATCCAACATTGCATGTTCTTGTTATACCTGGAAATCCAGGTATTGTTTCATTTTACAAAGACTTTGTGGAGTCGCTGTATGAGTTGCTGGGTGGAGCTGCGTCTGTGACAGCTGTTGGGCATATATCTCATACCAAAAAGAACTGGGAGCATGGAAGGCTGTTCTCATTACAAGAACAAATTGATCATAAGATGGACTTCATCAAACAGGAATTGCAAAATAATGAAGTTCCTATATTACTGGTTGGGCACTCTATTGGTTCATATATATCTCTCGAAATGTTCAAAAGATCTCCAGAGAAGGTGACATTTTGTGTTGGACTCTATCCATTTTTGGCCTTAAACCGACAATCCATACAGCAGTCTTTCATCAGGAAGCTTGCAGCGTCCCGCATTACAAGTGTTGTCTTGAGCTTAATTGTTGCGCTGTTGGGATTGTTTCCTATCCGATTGTTGAGGTTAATTGTGACCACATTCCTTGGGAAGCTCTGGTCAGCTACTGCAGTTGAGGCTACTTGCTCTCACTTGGTAAAGTACCATACCATGCGGAATGTCCTCTTTATGGCAATGACAGAATTCAAAAAGCTTTCAGAAACACCGGATTGGGCATTCATGAGGGAAAAGCAGCACAAAATGGCATTTTTGTTCGGCGTTGATGATCACTGGGGTCCACTGCAAATGTTGGAAGAGATTTCCAAGCAGGTCCCAGATGCTGTTCTATCAATTGAAAGAGAGGGCCATACTCATGCTTTTTGTTGCACTGAAGCAGGCTCAATGTGGGTTGCTGAGCATGTAGCAGGCTTGATCAAGAACAATCAAGCGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIDHydrolase

Protein Analysis

350

Amino Acids

39.5

Weight (kDa)

8.52

Isoelectric Point (pI)

38.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIDHydrolase	PF10230	77 - 326	4.6e-71	Lipid-droplet associated hydrolase
Hydrolase_4	PF12146	79 - 212	4.3e-06	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002532)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11620 AT3G11620 AT3G11620 AT3G11620 AT3G11620 AT3G11620 AT3G11620 AT3G11620 AT3G11620
fragaria_vesca	FvH4_6g19910 FvH4_6g19910 FvH4_6g19910 FvH4_6g19910 FvH4_6g19910 FvH4_6g19910 FvH4_6g19910 FvH4_6g19910 FvH4_6g19910 FvH4_6g19910 FvH4_6g19910 FvH4_6g19910 FvH4_6g19910
malus_domestica	MD12G1034600.v1.1 MD14G1035800.v1.1
prunus_persica	Prupe.7G098300_v2.0.a1 Prupe.7G098300_v2.0.a1
pyrus_communis	pycom12g03190
rosa_chinensis	RchiOBHm_Chr3g0475311 RchiOBHm_Chr3g0475321
rosa_laevigata	RLG00000023852
rosa_multiflora	Rmu_ssc0000140.1_g000007
rosa_roxburghii	Rroxscaffold_6G00406390
rosa_rugosa	Rorug03G0147900 Rorug03G0148000 Rorug03G0148000 Rorug03G0148100 Rorug03G0148200
rosa_samantha	Rh3AG198000 Rh3BG228200 Rh3DG223400
rosa_wichuraiana	Rw3G017990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	913
AciI	CCGC	2 cut(s)	613, 769
AclWI	GGATC	1 cut(s)	205
AcsI	RAATTY	2 cut(s)	124, 797
AcuI	CTGAAG	3 cut(s)	156, 219, 1005
AfaI	GTAC	2 cut(s)	204, 758
AfiI	CCNNNNNNNGG	1 cut(s)	784
AgeI	ACCGGT	1 cut(s)	50
AgsI	TTSAA	4 cut(s)	146, 508, 802, 950
AjnI	CCWGG	2 cut(s)	250, 259
AluBI	AGCT	8 cut(s)	81, 320, 335, 601, 636, 709, 719, 808
AluI	AGCT	8 cut(s)	81, 320, 335, 601, 636, 709, 719, 808
AlwI	GGATC	1 cut(s)	205
AlwNI	CAGNNNCTG	3 cut(s)	134, 722, 935
AoxI	GGCC	3 cut(s)	68, 558, 958
ApeKI	GCWGC	3 cut(s)	320, 605, 847
ApoI	RAATTY	2 cut(s)	124, 797
AsiGI	ACCGGT	1 cut(s)	50
Asp700I	GAANNNNTTC	1 cut(s)	141
AspLEI	GCGC	1 cut(s)	649
AspS9I	GGNCC	3 cut(s)	890, 925, 958
AsuHPI	GGTGA	4 cut(s)	37, 125, 184, 538
AvaII	GGWCC	2 cut(s)	890, 925
BaeGI	GKGCMC	1 cut(s)	474
BbvI	GCAGC	3 cut(s)	307, 617, 859
BccI	CCATC	1 cut(s)	409
BciT130I	CCWGG	2 cut(s)	252, 261
BclI	TGATCA	3 cut(s)	406, 880, 1026
BfmI	CTRYAG	3 cut(s)	82, 216, 723
BfuAI	ACCTGC	1 cut(s)	913
BglII	AGATCT	1 cut(s)	512
BisI	GCNGC	3 cut(s)	321, 606, 848
BlpI	GCTNAGC	1 cut(s)	1008
BlsI	GCNGC	3 cut(s)	322, 607, 849
BmcAI	AGTACT	1 cut(s)	204
Bme1390I	CCNGG	2 cut(s)	252, 261
Bme18I	GGWCC	2 cut(s)	890, 925
BmgT120I	GGNCC	3 cut(s)	890, 925, 958
BmiI	GGNNCC	2 cut(s)	891, 927
BmrFI	CCNGG	2 cut(s)	252, 261
BmrI	ACTGGG	2 cut(s)	376, 895
BmsI	GCATC	1 cut(s)	922
BmuI	ACTGGG	2 cut(s)	376, 895
BpmI	CTGGAG	2 cut(s)	227, 501
Bpu1102I	GCTNAGC	1 cut(s)	1008
BpuEI	CTTGAG	1 cut(s)	652
BsaJI	CCNNGG	3 cut(s)	71, 94, 700
BsaWI	WCCGGW	2 cut(s)	50, 820
BsaXI	ACNNNNNCTCC	2 cut(s)	284, 314
Bsc4I	CCNNNNNNNGG	1 cut(s)	784
Bse118I	RCCGGY	1 cut(s)	50
Bse1I	ACTGG	4 cut(s)	210, 371, 468, 890
Bse3DI	GCAATG	3 cut(s)	184, 230, 795
BseBI	CCWGG	2 cut(s)	252, 261
BseDI	CCNNGG	3 cut(s)	71, 94, 700
BseLI	CCNNNNNNNGG	1 cut(s)	784
BseMI	GCAATG	3 cut(s)	184, 230, 795
BseMII	CTCAG	1 cut(s)	999
BseNI	ACTGG	4 cut(s)	210, 371, 468, 890
BseSI	GKGCMC	1 cut(s)	474
BseXI	GCAGC	3 cut(s)	307, 617, 859
BseYI	CCCAGC	1 cut(s)	310
BshFI	GGCC	3 cut(s)	70, 560, 960
BshTI	ACCGGT	1 cut(s)	50
BsiSI	CCGG	2 cut(s)	51, 821
BslFI	GGGAC	2 cut(s)	595, 911
BslI	CCNNNNNNNGG	1 cut(s)	784
BsmFI	GGGAC	2 cut(s)	595, 911
BsmI	GAATGC	1 cut(s)	830
BsnI	GGCC	3 cut(s)	70, 560, 960
Bsp1286I	GDGCHC	1 cut(s)	474
Bsp143I	GATC	5 cut(s)	210, 406, 512, 880, 1026
Bsp1720I	GCTNAGC	1 cut(s)	1008
BspACI	CCGC	2 cut(s)	613, 769
BspANI	GGCC	3 cut(s)	70, 560, 960
BspCNI	CTCAG	1 cut(s)	1000
BspHI	TCATGA	1 cut(s)	834
BspLI	GGNNCC	2 cut(s)	891, 927
BspMAI	CTGCAG	2 cut(s)	220, 727
BspMI	ACCTGC	1 cut(s)	913
BspPI	GGATC	1 cut(s)	205
BsrDI	GCAATG	3 cut(s)	184, 230, 795
BsrFI	RCCGGY	1 cut(s)	50
BsrI	ACTGG	4 cut(s)	210, 371, 468, 890
BssAI	RCCGGY	1 cut(s)	50
BssECI	CCNNGG	3 cut(s)	71, 94, 700
BssMI	GATC	5 cut(s)	210, 406, 512, 880, 1026
BssT1I	CCWWGG	2 cut(s)	71, 700
Bst2UI	CCWGG	2 cut(s)	252, 261
Bst4CI	ACNGT	1 cut(s)	95
Bst6I	CTCTTC	1 cut(s)	903
BstC8I	GCNNGC	4 cut(s)	79, 603, 991, 1021
BstDEI	CTNAG	1 cut(s)	1008
BstDSI	CCRYGG	1 cut(s)	94
BstHHI	GCGC	1 cut(s)	649
BstKTI	GATC	5 cut(s)	213, 409, 515, 883, 1029
BstMBI	GATC	5 cut(s)	210, 406, 512, 880, 1026
BstMWI	GCNNNNNNNGC	2 cut(s)	379, 731
BstNI	CCWGG	2 cut(s)	252, 261
BstNSI	RCATGY	2 cut(s)	239, 1016
BstSCI	CCNGG	2 cut(s)	250, 259
BstSFI	CTRYAG	3 cut(s)	82, 216, 723
BstSLI	GKGCMC	1 cut(s)	474
BstV1I	GCAGC	3 cut(s)	307, 617, 859
BstX2I	RGATCY	2 cut(s)	210, 512
BstYI	RGATCY	2 cut(s)	210, 512
BsuRI	GGCC	3 cut(s)	70, 560, 960
BtgI	CCRYGG	1 cut(s)	94
BtsI	GCAGTG	1 cut(s)	893
BtsIMutI	CAGTG	4 cut(s)	195, 883, 893, 981
BveI	ACCTGC	1 cut(s)	913
Cac8I	GCNNGC	4 cut(s)	79, 603, 991, 1021
CaiI	CAGNNNCTG	3 cut(s)	134, 722, 935
CciI	TCATGA	1 cut(s)	834
CfoI	GCGC	1 cut(s)	649
Cfr10I	RCCGGY	1 cut(s)	50
Cfr13I	GGNCC	3 cut(s)	890, 925, 958
CseI	GACGC	3 cut(s)	312, 597, 1032
Csp6I	GTAC	2 cut(s)	203, 757
CspAI	ACCGGT	1 cut(s)	50
CspCI	CAANNNNNGTGG	2 cut(s)	682, 717
CviAII	CATG	6 cut(s)	236, 374, 766, 835, 968, 1013
CviQI	GTAC	2 cut(s)	203, 757
DdeI	CTNAG	1 cut(s)	1008
DpnI	GATC	5 cut(s)	212, 408, 514, 882, 1028
DpnII	GATC	5 cut(s)	210, 406, 512, 880, 1026
Eam1104I	CTCTTC	1 cut(s)	903
EarI	CTCTTC	1 cut(s)	903
Eco130I	CCWWGG	2 cut(s)	71, 700
Eco47I	GGWCC	2 cut(s)	890, 925
Eco57I	CTGAAG	3 cut(s)	156, 219, 1005
EcoO109I	RGGNCCY	1 cut(s)	925
EcoRI	GAATTC	1 cut(s)	797
EcoRII	CCWGG	2 cut(s)	250, 259
EcoT14I	CCWWGG	2 cut(s)	71, 700
ErhI	CCWWGG	2 cut(s)	71, 700
FaeI	CATG	6 cut(s)	239, 377, 769, 838, 971, 1016
FalI	AAGNNNNNCTT	2 cut(s)	404, 436
FaqI	GGGAC	2 cut(s)	595, 911
FatI	CATG	6 cut(s)	235, 373, 765, 834, 967, 1012
FauI	CCCGC	1 cut(s)	620
FbaI	TGATCA	3 cut(s)	406, 880, 1026
Fnu4HI	GCNGC	3 cut(s)	321, 606, 848
Fsp4HI	GCNGC	3 cut(s)	321, 606, 848
GlaI	GCGC	1 cut(s)	648
GluI	GCNGC	3 cut(s)	321, 606, 848
GsaI	CCCAGC	1 cut(s)	314
GsuI	CTGGAG	2 cut(s)	227, 501
HaeIII	GGCC	3 cut(s)	70, 560, 960
HapII	CCGG	2 cut(s)	51, 821
HgaI	GACGC	3 cut(s)	312, 597, 1032
HhaI	GCGC	1 cut(s)	649
Hin1II	CATG	6 cut(s)	239, 377, 769, 838, 971, 1016
Hin6I	GCGC	1 cut(s)	647
HinP1I	GCGC	1 cut(s)	647
HindIII	AAGCTT	2 cut(s)	599, 806
HinfI	GANTC	5 cut(s)	12, 131, 154, 293, 543
HpaII	CCGG	2 cut(s)	51, 821
HphI	GGTGA	4 cut(s)	37, 125, 184, 538
Hpy166II	GTNNAC	1 cut(s)	893
Hpy188I	TCNGA	5 cut(s)	59, 130, 136, 671, 814
Hpy188III	TCNNGA	6 cut(s)	497, 518, 595, 631, 835, 1030
Hpy8I	GTNNAC	1 cut(s)	893
HpyAV	CCTTC	3 cut(s)	30, 372, 517
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4V	TGCA	8 cut(s)	177, 218, 235, 439, 605, 725, 898, 981
HpyF10VI	GCNNNNNNNGC	2 cut(s)	379, 731
HpyF3I	CTNAG	1 cut(s)	1008
Hsp92II	CATG	6 cut(s)	239, 377, 769, 838, 971, 1016
HspAI	GCGC	1 cut(s)	647
Ksp22I	TGATCA	3 cut(s)	406, 880, 1026
Kzo9I	GATC	5 cut(s)	210, 406, 512, 880, 1026
LmnI	GCTCC	2 cut(s)	317, 370
Lsp1109I	GCAGC	3 cut(s)	307, 617, 859
LweI	GCATC	1 cut(s)	922
MaeIII	GTNAC	3 cut(s)	328, 526, 688
MalI	GATC	5 cut(s)	212, 408, 514, 882, 1028
MboI	GATC	5 cut(s)	210, 406, 512, 880, 1026
MboII	GAAGA	2 cut(s)	163, 920
MfeI	CAATTG	1 cut(s)	945
MflI	RGATCY	2 cut(s)	210, 512
MhlI	GDGCHC	1 cut(s)	474
MluCI	AATT	8 cut(s)	124, 141, 402, 434, 639, 684, 797, 945
MlyI	GAGTC	3 cut(s)	6, 302, 537
MmeI	TCCRAC	3 cut(s)	251, 520, 885
MnlI	CCTC	6 cut(s)	45, 672, 724, 788, 831, 949
MroXI	GAANNNNTTC	1 cut(s)	141
MseI	TTAA	3 cut(s)	563, 638, 683
MslI	CAYNNNNRTG	1 cut(s)	966
MspA1I	CMGCKG	1 cut(s)	335
MspI	CCGG	2 cut(s)	51, 821
MspR9I	CCNGG	2 cut(s)	252, 261
MunI	CAATTG	1 cut(s)	945
Mva1269I	GAATGC	1 cut(s)	830
MvaI	CCWGG	2 cut(s)	252, 261
MwoI	GCNNNNNNNGC	2 cut(s)	379, 731
NdeII	GATC	5 cut(s)	210, 406, 512, 880, 1026
NlaIII	CATG	6 cut(s)	239, 377, 769, 838, 971, 1016
NlaIV	GGNNCC	2 cut(s)	891, 927
NmuCI	GTSAC	3 cut(s)	328, 526, 688
NspI	RCATGY	2 cut(s)	239, 1016
PagI	TCATGA	1 cut(s)	834
PctI	GAATGC	1 cut(s)	830
PdmI	GAANNNNTTC	1 cut(s)	141
PfeI	GAWTC	2 cut(s)	131, 154
PinAI	ACCGGT	1 cut(s)	50
PkrI	GCNGC	3 cut(s)	322, 607, 849
PleI	GAGTC	3 cut(s)	6, 301, 537
PpsI	GAGTC	3 cut(s)	6, 301, 537
PpuMI	RGGWCCY	1 cut(s)	925
Psp5II	RGGWCCY	1 cut(s)	925
Psp6I	CCWGG	2 cut(s)	250, 259
PspFI	CCCAGC	1 cut(s)	310
PspGI	CCWGG	2 cut(s)	250, 259
PspN4I	GGNNCC	2 cut(s)	891, 927
PspPI	GGNCC	3 cut(s)	890, 925, 958
PspPPI	RGGWCCY	1 cut(s)	925
PstI	CTGCAG	2 cut(s)	220, 727
PstNI	CAGNNNCTG	3 cut(s)	134, 722, 935
PsuI	RGATCY	2 cut(s)	210, 512
PvuII	CAGCTG	1 cut(s)	335
RsaI	GTAC	2 cut(s)	204, 758
RsaNI	GTAC	2 cut(s)	203, 757
RseI	CAYNNNNRTG	1 cut(s)	966
SaqAI	TTAA	3 cut(s)	563, 638, 683
SatI	GCNGC	3 cut(s)	321, 606, 848
Sau3AI	GATC	5 cut(s)	210, 406, 512, 880, 1026
Sau96I	GGNCC	3 cut(s)	890, 925, 958
ScaI	AGTACT	1 cut(s)	204
SchI	GAGTC	3 cut(s)	6, 302, 537
ScrFI	CCNGG	2 cut(s)	252, 261
SduI	GDGCHC	1 cut(s)	474
SfaNI	GCATC	1 cut(s)	922
SfcI	CTRYAG	3 cut(s)	82, 216, 723
SinI	GGWCC	2 cut(s)	890, 925
SmiMI	CAYNNNNRTG	1 cut(s)	966
SmlI	CTYRAG	1 cut(s)	631
SmoI	CTYRAG	1 cut(s)	631
Sse9I	AATT	8 cut(s)	124, 141, 402, 434, 639, 684, 797, 945
SsiI	CCGC	2 cut(s)	613, 769
StyD4I	CCNGG	2 cut(s)	250, 259
StyI	CCWWGG	2 cut(s)	71, 700
TaaI	ACNGT	1 cut(s)	95
TaqI	TCGA	2 cut(s)	10, 498
TasI	AATT	8 cut(s)	124, 141, 402, 434, 639, 684, 797, 945
TatI	WGTACW	1 cut(s)	202
TfiI	GAWTC	2 cut(s)	131, 154
Tru1I	TTAA	3 cut(s)	563, 638, 683
Tru9I	TTAA	3 cut(s)	563, 638, 683
TscAI	CASTG	4 cut(s)	202, 890, 900, 988
TseFI	GTSAC	3 cut(s)	328, 526, 688
TseI	GCWGC	3 cut(s)	320, 605, 847
Tsp45I	GTSAC	3 cut(s)	328, 526, 688
TspDTI	ATGAA	6 cut(s)	261, 412, 462, 474, 580, 823
TspRI	CASTG	4 cut(s)	202, 890, 900, 988
VpaK11BI	GGWCC	2 cut(s)	890, 925
XapI	RAATTY	2 cut(s)	124, 797
XceI	RCATGY	2 cut(s)	239, 1016
XcmI	CCANNNNNNNNNTGG	1 cut(s)	202
XmnI	GAANNNNTTC	1 cut(s)	141
ZrmI	AGTACT	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.