Rh3BG228200

UPF0554 protein C2orf43 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0002532
Physical Location & Seq
Reverse (-)
20984036 .. 20989908
5873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG228200.1

Sequence Viewer

Length: 816 bp
ATGGATCAGGACATTTCACAACGTGAAAACCAAGTGCTTCGAGTGAAGAAGCGTGTCGCATTTCGTTTATGCGATGTGTCGAGTCACACTACTGAAGTAATGGAGATTCAAGCTGACAATCCAACATTTCATGTTCTAATCATCCCTGGAAATCCAGGTGTTGTTACATTTTATAAAGACTTTGTGGAGGCTCTATATGAGCTGCTGGGTGGAAATGCGTCTGTGACAGTTGTTGGGCATATATCACACACCAAAAAGAACTGGGAGCATGGAAGGATTTTCTCATTACAAGCCCAAATTAATCACAAGATGGACTTCATCAAACAGGAATTGCAAAATACTGCAGGCCCTTTATTACTGGTAGGGCACTCTATTGGATCATATATATCCATGGAAATGTTTAGGAGGTCTCCAGAACAGGTGACTTATTGTGTTGGGCTATATCCGTTTTTGGCGTTAAACCCAGAGTCCACAAAACAGGCCCTTATTGGGAAGATTACAGAGTCCCGCATTGTATGTGTTGCCTTGAGCTTTATTGTTGCGCTCTTGGGATTGTTGCCTATATCACTTTTGAGGTTAATTGTGCTCACATTCCTTGGGAAGTCATGGTCAGCTGCTGCAGTTGAGGCTGCTTGCTATCACTTGGTAAAGTACCACACAATGCGGAATATTCTCTTTATGGCAATGACAGAATTCCAAAAGCTTTCAGAAACACCAGATTGGGAATTCATGAGGGAAAATCTGGACAAGATAGCATTTTTGTTCGGCATTGATGATCACTGGGCTCCACTGCAAATGTTTGAAGAGGTAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LIDHydrolase

Protein Analysis

271

Amino Acids

30.79

Weight (kDa)

6.2

Isoelectric Point (pI)

37.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LIDHydrolase PF10230 42 - 270 1.3e-63 Lipid-droplet associated hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 174
AciI CCGC 2 cut(s) 508, 664
AclWI GGATC 2 cut(s) 12, 385
AcsI RAATTY 2 cut(s) 692, 725
AcuI CTGAAG 1 cut(s) 114
AdeI CACNNNGTG 1 cut(s) 23
AfaI GTAC 1 cut(s) 653
AfiI CCNNNNNNNGG 1 cut(s) 489
AgsI TTSAA 2 cut(s) 110, 803
AjnI CCWGG 2 cut(s) 145, 154
AluBI AGCT 5 cut(s) 113, 202, 531, 614, 703
AluI AGCT 5 cut(s) 113, 202, 531, 614, 703
Alw21I GWGCWC 1 cut(s) 588
Alw26I GTCTC 1 cut(s) 414
AlwI GGATC 2 cut(s) 12, 385
AlwNI CAGNNNCTG 1 cut(s) 617
AoxI GGCC 2 cut(s) 346, 480
ApeKI GCWGC 4 cut(s) 202, 614, 617, 629
ApoI RAATTY 2 cut(s) 692, 725
AseI ATTAAT 1 cut(s) 300
AspLEI GCGC 1 cut(s) 544
AspS9I GGNCC 2 cut(s) 347, 481
AsuHPI GGTGA 1 cut(s) 433
BaeGI GKGCMC 1 cut(s) 369
BanII GRGCYC 1 cut(s) 787
Bbv12I GWGCWC 1 cut(s) 588
BbvI GCAGC 4 cut(s) 189, 601, 604, 616
BccI CCATC 1 cut(s) 304
BciT130I CCWGG 2 cut(s) 147, 156
BclI TGATCA 1 cut(s) 775
BcoDI GTCTC 1 cut(s) 414
BfmI CTRYAG 2 cut(s) 342, 618
BisI GCNGC 4 cut(s) 203, 615, 618, 630
BlsI GCNGC 4 cut(s) 204, 616, 619, 631
Bme1390I CCNGG 2 cut(s) 147, 156
BmgT120I GGNCC 2 cut(s) 347, 481
BmiI GGNNCC 1 cut(s) 786
BmrFI CCNGG 2 cut(s) 147, 156
BmrI ACTGGG 2 cut(s) 271, 790
BmuI ACTGGG 2 cut(s) 271, 790
BpmI CTGGAG 1 cut(s) 396
BpuEI CTTGAG 1 cut(s) 547
BsaI GGTCTC 1 cut(s) 414
BsaJI CCNNGG 3 cut(s) 145, 390, 595
Bsc4I CCNNNNNNNGG 1 cut(s) 489
Bse1I ACTGG 3 cut(s) 266, 363, 785
Bse3DI GCAATG 1 cut(s) 690
BseBI CCWGG 2 cut(s) 147, 156
BseDI CCNNGG 3 cut(s) 145, 390, 595
BseGI GGATG 1 cut(s) 141
BseLI CCNNNNNNNGG 1 cut(s) 489
BseMI GCAATG 1 cut(s) 690
BseNI ACTGG 3 cut(s) 266, 363, 785
BseSI GKGCMC 1 cut(s) 369
BseXI GCAGC 4 cut(s) 189, 601, 604, 616
BseYI CCCAGC 1 cut(s) 205
BshFI GGCC 2 cut(s) 348, 482
BsiHKAI GWGCWC 1 cut(s) 588
BslFI GGGAC 1 cut(s) 490
BslI CCNNNNNNNGG 1 cut(s) 489
BsmAI GTCTC 1 cut(s) 414
BsmFI GGGAC 1 cut(s) 490
BsnI GGCC 2 cut(s) 348, 482
Bso31I GGTCTC 1 cut(s) 414
Bsp1286I GDGCHC 3 cut(s) 369, 588, 787
Bsp143I GATC 3 cut(s) 4, 377, 775
Bsp19I CCATGG 1 cut(s) 390
BspACI CCGC 2 cut(s) 508, 664
BspANI GGCC 2 cut(s) 348, 482
BspHI TCATGA 1 cut(s) 729
BspLI GGNNCC 1 cut(s) 786
BspMAI CTGCAG 2 cut(s) 346, 622
BspPI GGATC 2 cut(s) 12, 385
BspTNI GGTCTC 1 cut(s) 414
BsrDI GCAATG 1 cut(s) 690
BsrI ACTGG 3 cut(s) 266, 363, 785
BssECI CCNNGG 3 cut(s) 145, 390, 595
BssMI GATC 3 cut(s) 4, 377, 775
BssT1I CCWWGG 2 cut(s) 390, 595
Bst2UI CCWGG 2 cut(s) 147, 156
Bst4CI ACNGT 1 cut(s) 229
Bst6I CTCTTC 1 cut(s) 798
BstC8I GCNNGC 2 cut(s) 346, 634
BstDSI CCRYGG 1 cut(s) 390
BstF5I GGATG 1 cut(s) 141
BstHHI GCGC 1 cut(s) 544
BstKTI GATC 3 cut(s) 7, 380, 778
BstMAI GTCTC 1 cut(s) 414
BstMBI GATC 3 cut(s) 4, 377, 775
BstMWI GCNNNNNNNGC 1 cut(s) 626
BstNI CCWGG 2 cut(s) 147, 156
BstSCI CCNGG 2 cut(s) 145, 154
BstSFI CTRYAG 2 cut(s) 342, 618
BstSLI GKGCMC 1 cut(s) 369
BstV1I GCAGC 4 cut(s) 189, 601, 604, 616
BsuRI GGCC 2 cut(s) 348, 482
BtgI CCRYGG 1 cut(s) 390
BtgZI GCGATG 1 cut(s) 87
BtsCI GGATG 1 cut(s) 141
BtsI GCAGTG 1 cut(s) 788
BtsIMutI CAGTG 2 cut(s) 778, 788
Cac8I GCNNGC 2 cut(s) 346, 634
CaiI CAGNNNCTG 1 cut(s) 617
CciI TCATGA 1 cut(s) 729
CfoI GCGC 1 cut(s) 544
Cfr13I GGNCC 2 cut(s) 347, 481
CseI GACGC 1 cut(s) 207
Csp6I GTAC 1 cut(s) 652
CviAII CATG 5 cut(s) 131, 269, 391, 606, 730
CviQI GTAC 1 cut(s) 652
DpnI GATC 3 cut(s) 6, 379, 777
DpnII GATC 3 cut(s) 4, 377, 775
DraIII CACNNNGTG 1 cut(s) 23
Eam1104I CTCTTC 1 cut(s) 798
EarI CTCTTC 1 cut(s) 798
Eco130I CCWWGG 2 cut(s) 390, 595
Eco24I GRGCYC 1 cut(s) 787
Eco31I GGTCTC 1 cut(s) 414
Eco57I CTGAAG 1 cut(s) 114
EcoO109I RGGNCCY 2 cut(s) 347, 481
EcoRI GAATTC 2 cut(s) 692, 725
EcoRII CCWGG 2 cut(s) 145, 154
EcoT14I CCWWGG 2 cut(s) 390, 595
EcoT38I GRGCYC 1 cut(s) 787
ErhI CCWWGG 2 cut(s) 390, 595
FaeI CATG 5 cut(s) 134, 272, 394, 609, 733
FalI AAGNNNNNCTT 2 cut(s) 299, 331
FaqI GGGAC 1 cut(s) 490
FatI CATG 5 cut(s) 130, 268, 390, 605, 729
FauI CCCGC 1 cut(s) 515
FbaI TGATCA 1 cut(s) 775
Fnu4HI GCNGC 4 cut(s) 203, 615, 618, 630
FokI GGATG 1 cut(s) 128
FriOI GRGCYC 1 cut(s) 787
Fsp4HI GCNGC 4 cut(s) 203, 615, 618, 630
GlaI GCGC 1 cut(s) 543
GluI GCNGC 4 cut(s) 203, 615, 618, 630
GsaI CCCAGC 1 cut(s) 209
GsuI CTGGAG 1 cut(s) 396
HaeIII GGCC 2 cut(s) 348, 482
HgaI GACGC 1 cut(s) 207
HhaI GCGC 1 cut(s) 544
Hin1II CATG 5 cut(s) 134, 272, 394, 609, 733
Hin6I GCGC 1 cut(s) 542
HinP1I GCGC 1 cut(s) 542
HindIII AAGCTT 1 cut(s) 701
HinfI GANTC 4 cut(s) 82, 106, 467, 503
HphI GGTGA 1 cut(s) 433
Hpy166II GTNNAC 1 cut(s) 471
Hpy188I TCNGA 1 cut(s) 709
Hpy188III TCNNGA 4 cut(s) 8, 413, 730, 743
Hpy8I GTNNAC 1 cut(s) 471
HpyAV CCTTC 1 cut(s) 267
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4IV ACGT 1 cut(s) 22
HpyCH4V TGCA 4 cut(s) 334, 344, 620, 793
HpyF10VI GCNNNNNNNGC 1 cut(s) 626
HpySE526I ACGT 1 cut(s) 22
Hsp92II CATG 5 cut(s) 134, 272, 394, 609, 733
HspAI GCGC 1 cut(s) 542
Ksp22I TGATCA 1 cut(s) 775
Kzo9I GATC 3 cut(s) 4, 377, 775
LmnI GCTCC 2 cut(s) 265, 790
Lsp1109I GCAGC 4 cut(s) 189, 601, 604, 616
MaeII ACGT 1 cut(s) 22
MaeIII GTNAC 4 cut(s) 83, 163, 223, 421
MalI GATC 3 cut(s) 6, 379, 777
MboI GATC 3 cut(s) 4, 377, 775
MboII GAAGA 3 cut(s) 58, 505, 815
MhlI GDGCHC 3 cut(s) 369, 588, 787
MluCI AATT 5 cut(s) 297, 329, 579, 692, 725
MlyI GAGTC 3 cut(s) 91, 476, 512
MmeI TCCRAC 1 cut(s) 146
MnlI CCTC 6 cut(s) 181, 399, 567, 619, 726, 799
MseI TTAA 3 cut(s) 300, 458, 578
MslI CAYNNNNRTG 1 cut(s) 395
MspA1I CMGCKG 1 cut(s) 614
MspR9I CCNGG 2 cut(s) 147, 156
MvaI CCWGG 2 cut(s) 147, 156
MwoI GCNNNNNNNGC 1 cut(s) 626
NcoI CCATGG 1 cut(s) 390
NdeII GATC 3 cut(s) 4, 377, 775
NlaIII CATG 5 cut(s) 134, 272, 394, 609, 733
NlaIV GGNNCC 1 cut(s) 786
NmuCI GTSAC 3 cut(s) 83, 223, 421
PagI TCATGA 1 cut(s) 729
PfeI GAWTC 1 cut(s) 106
PkrI GCNGC 4 cut(s) 204, 616, 619, 631
PleI GAGTC 3 cut(s) 90, 475, 511
PpsI GAGTC 3 cut(s) 90, 475, 511
PshBI ATTAAT 1 cut(s) 300
PsiI TTATAA 1 cut(s) 174
Psp6I CCWGG 2 cut(s) 145, 154
PspFI CCCAGC 1 cut(s) 205
PspGI CCWGG 2 cut(s) 145, 154
PspN4I GGNNCC 1 cut(s) 786
PspPI GGNCC 2 cut(s) 347, 481
PstI CTGCAG 2 cut(s) 346, 622
PstNI CAGNNNCTG 1 cut(s) 617
PvuII CAGCTG 1 cut(s) 614
RsaI GTAC 1 cut(s) 653
RsaNI GTAC 1 cut(s) 652
RseI CAYNNNNRTG 1 cut(s) 395
SaqAI TTAA 3 cut(s) 300, 458, 578
SatI GCNGC 4 cut(s) 203, 615, 618, 630
Sau3AI GATC 3 cut(s) 4, 377, 775
Sau96I GGNCC 2 cut(s) 347, 481
SchI GAGTC 3 cut(s) 91, 476, 512
ScrFI CCNGG 2 cut(s) 147, 156
SduI GDGCHC 3 cut(s) 369, 588, 787
SfcI CTRYAG 2 cut(s) 342, 618
SmiMI CAYNNNNRTG 1 cut(s) 395
SmlI CTYRAG 1 cut(s) 526
SmoI CTYRAG 1 cut(s) 526
Sse9I AATT 5 cut(s) 297, 329, 579, 692, 725
SsiI CCGC 2 cut(s) 508, 664
SspI AATATT 1 cut(s) 670
StyD4I CCNGG 2 cut(s) 145, 154
StyI CCWWGG 2 cut(s) 390, 595
TaaI ACNGT 1 cut(s) 229
TaiI ACGT 1 cut(s) 25
TaqI TCGA 2 cut(s) 40, 80
TasI AATT 5 cut(s) 297, 329, 579, 692, 725
TfiI GAWTC 1 cut(s) 106
Tru1I TTAA 3 cut(s) 300, 458, 578
Tru9I TTAA 3 cut(s) 300, 458, 578
TscAI CASTG 2 cut(s) 785, 795
TseFI GTSAC 3 cut(s) 83, 223, 421
TseI GCWGC 4 cut(s) 202, 614, 617, 629
Tsp45I GTSAC 3 cut(s) 83, 223, 421
TspDTI ATGAA 3 cut(s) 119, 307, 718
TspGWI ACGGA 1 cut(s) 435
TspRI CASTG 2 cut(s) 785, 795
VspI ATTAAT 1 cut(s) 300
XapI RAATTY 2 cut(s) 692, 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.