FvH4_6g19910

UPF0554 protein C2orf43 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002532
Physical Location & Seq
Reverse (-)
13364103 .. 13369843
5741 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g19910.t1

Sequence Viewer

Length: 945 bp
ATGGATCACGACATATCACATCCGGAACTCGAAGTGCTTCGAGTGAAGAAGCGTGTCGCATTTCGTGTGTGCAATGTTTCAAGTTATACTACTGAAGTAATGGAGATTCAAGCTGATAATCCAACATTTCATGTTCTATTCATCCCTGGAAATCCAGGTGTTGTTACATTTTATAAAGATTTTGTGGAGGCTCTATATGAGCTTCTGGGTGGAACTGCGTCTGTGACAGCTGTTGGTCATATCTCACACACCAATAAGAACTGGGAGCATGGAAGATTGTTCTCATTAGAAGACCAGATTATTCACAAGATGGACTTCATCAAACAGGAATTGCAAAATACTGCAGTCCCTTTATTACTGGTAGGACATTCTATTGGTGCATATATATCTATGGAAATGTTTAGAATGTCTCCAGAGAAGGTAACTTATTTTGTCGGGTTATATCCTTTTTTGGCTTTGAACCCACAATCTACAAAGCAGACTTCTATTGCGAAAATTGCAGAGTCTCGCTTTGTCTGTGTTGCCTTGAGCATTATTGTTGCGCTCTTGGGATTGTTGCCTAGATCACTTTTGAGGTTAGTTGTGCTCACATTCCTTGGGAAGTCATGGTCAGCTGCTTCAATTGAGGCTGCTTGCTCTCACTTAGTAAAGTACCACACCATGAGGAACATTCTATTTATGGCAAAGACCGAATTCCAAAAGCTTTCAGAAACACCAGATTGGGCATTCATGAGGGAAAATCAGCACAAGATTGCATTTTTGTTCGGCATTGATGATCACTGGGGTCCACTGCAAATGTTTGAAGAGATTGCCAAGCAGGTCCCTGATGCTGCTCTATCAATTGAAAGAGAGGGTCATACGCATGCTTTCTGTTGCACTGAAGCTGGATCATTGTGGGTTGCTGAGCATGTGGCAAGCTTGATCAAGAATAAAGTTTCACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LIDHydrolase

Protein Analysis

315

Amino Acids

35.36

Weight (kDa)

6.43

Isoelectric Point (pI)

39.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LIDHydrolase PF10230 42 - 291 8.9e-69 Lipid-droplet associated hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 174
Acc36I ACCTGC 1 cut(s) 808
AccIII TCCGGA 1 cut(s) 22
AclWI GGATC 2 cut(s) 12, 895
AcsI RAATTY 1 cut(s) 692
AcuI CTGAAG 2 cut(s) 114, 900
AfaI GTAC 1 cut(s) 653
AgsI TTSAA 6 cut(s) 81, 110, 460, 621, 803, 845
AjnI CCWGG 2 cut(s) 145, 154
AluBI AGCT 7 cut(s) 113, 202, 230, 614, 703, 884, 918
AluI AGCT 7 cut(s) 113, 202, 230, 614, 703, 884, 918
Alw21I GWGCWC 1 cut(s) 588
Alw26I GTCTC 2 cut(s) 414, 510
AlwI GGATC 2 cut(s) 12, 895
Aor13HI TCCGGA 1 cut(s) 22
ApeKI GCWGC 3 cut(s) 614, 629, 830
ApoI RAATTY 1 cut(s) 692
Asp700I GAANNNNTTC 1 cut(s) 36
AspLEI GCGC 1 cut(s) 544
AspS9I GGNCC 2 cut(s) 785, 820
AvaII GGWCC 2 cut(s) 785, 820
BbsI GAAGAC 1 cut(s) 297
Bbv12I GWGCWC 1 cut(s) 588
BbvI GCAGC 3 cut(s) 601, 616, 817
BccI CCATC 1 cut(s) 304
BciT130I CCWGG 2 cut(s) 147, 156
BclI TGATCA 2 cut(s) 775, 921
BcoDI GTCTC 2 cut(s) 414, 510
BfaI CTAG 1 cut(s) 561
BfmI CTRYAG 1 cut(s) 342
BfuAI ACCTGC 1 cut(s) 808
BisI GCNGC 3 cut(s) 615, 630, 831
BlpI GCTNAGC 1 cut(s) 903
BlsI GCNGC 3 cut(s) 616, 631, 832
Bme1390I CCNGG 2 cut(s) 147, 156
Bme18I GGWCC 2 cut(s) 785, 820
BmgT120I GGNCC 2 cut(s) 785, 820
BmiI GGNNCC 2 cut(s) 786, 822
BmrFI CCNGG 2 cut(s) 147, 156
BmrI ACTGGG 2 cut(s) 271, 790
BmsI GCATC 1 cut(s) 817
BmuI ACTGGG 2 cut(s) 271, 790
BpiI GAAGAC 1 cut(s) 297
BpmI CTGGAG 1 cut(s) 396
Bpu1102I GCTNAGC 1 cut(s) 903
BpuEI CTTGAG 1 cut(s) 547
BsaJI CCNNGG 2 cut(s) 145, 595
BsaWI WCCGGW 1 cut(s) 22
Bse1I ACTGG 3 cut(s) 266, 363, 785
Bse3DI GCAATG 1 cut(s) 79
BseAI TCCGGA 1 cut(s) 22
BseBI CCWGG 2 cut(s) 147, 156
BseDI CCNNGG 2 cut(s) 145, 595
BseGI GGATG 2 cut(s) 19, 141
BseMI GCAATG 1 cut(s) 79
BseMII CTCAG 1 cut(s) 894
BseNI ACTGG 3 cut(s) 266, 363, 785
BseXI GCAGC 3 cut(s) 601, 616, 817
BsiHKAI GWGCWC 1 cut(s) 588
BsiSI CCGG 1 cut(s) 23
BslFI GGGAC 2 cut(s) 332, 806
BsmAI GTCTC 2 cut(s) 414, 510
BsmFI GGGAC 2 cut(s) 332, 806
BsmI GAATGC 1 cut(s) 725
Bsp1286I GDGCHC 1 cut(s) 588
Bsp13I TCCGGA 1 cut(s) 22
Bsp143I GATC 5 cut(s) 4, 563, 775, 887, 921
Bsp1720I GCTNAGC 1 cut(s) 903
BspCNI CTCAG 1 cut(s) 895
BspEI TCCGGA 1 cut(s) 22
BspHI TCATGA 1 cut(s) 729
BspLI GGNNCC 2 cut(s) 786, 822
BspMAI CTGCAG 1 cut(s) 346
BspMI ACCTGC 1 cut(s) 808
BspPI GGATC 2 cut(s) 12, 895
BsrDI GCAATG 1 cut(s) 79
BsrI ACTGG 3 cut(s) 266, 363, 785
BssECI CCNNGG 2 cut(s) 145, 595
BssMI GATC 5 cut(s) 4, 563, 775, 887, 921
BssT1I CCWWGG 1 cut(s) 595
Bst2UI CCWGG 2 cut(s) 147, 156
Bst4CI ACNGT 1 cut(s) 942
Bst6I CTCTTC 1 cut(s) 798
BstC8I GCNNGC 3 cut(s) 634, 864, 916
BstDEI CTNAG 2 cut(s) 643, 903
BstF5I GGATG 2 cut(s) 19, 141
BstHHI GCGC 1 cut(s) 544
BstKTI GATC 5 cut(s) 7, 566, 778, 890, 924
BstMAI GTCTC 2 cut(s) 414, 510
BstMBI GATC 5 cut(s) 4, 563, 775, 887, 921
BstMWI GCNNNNNNNGC 1 cut(s) 497
BstNI CCWGG 2 cut(s) 147, 156
BstNSI RCATGY 2 cut(s) 866, 911
BstSCI CCNGG 2 cut(s) 145, 154
BstSFI CTRYAG 1 cut(s) 342
BstV1I GCAGC 3 cut(s) 601, 616, 817
BstV2I GAAGAC 1 cut(s) 297
BtsCI GGATG 2 cut(s) 19, 141
BtsI GCAGTG 1 cut(s) 788
BtsIMutI CAGTG 4 cut(s) 778, 788, 876, 938
BveI ACCTGC 1 cut(s) 808
Cac8I GCNNGC 3 cut(s) 634, 864, 916
CciI TCATGA 1 cut(s) 729
CfoI GCGC 1 cut(s) 544
Cfr13I GGNCC 2 cut(s) 785, 820
CseI GACGC 1 cut(s) 207
Csp6I GTAC 1 cut(s) 652
CviAII CATG 7 cut(s) 131, 269, 606, 661, 730, 863, 908
CviQI GTAC 1 cut(s) 652
DdeI CTNAG 2 cut(s) 643, 903
DpnI GATC 5 cut(s) 6, 565, 777, 889, 923
DpnII GATC 5 cut(s) 4, 563, 775, 887, 921
Eam1104I CTCTTC 1 cut(s) 798
EarI CTCTTC 1 cut(s) 798
Eco130I CCWWGG 1 cut(s) 595
Eco47I GGWCC 2 cut(s) 785, 820
Eco57I CTGAAG 2 cut(s) 114, 900
EcoO109I RGGNCCY 1 cut(s) 820
EcoRI GAATTC 1 cut(s) 692
EcoRII CCWGG 2 cut(s) 145, 154
EcoT14I CCWWGG 1 cut(s) 595
ErhI CCWWGG 1 cut(s) 595
FaeI CATG 7 cut(s) 134, 272, 609, 664, 733, 866, 911
FalI AAGNNNNNCTT 2 cut(s) 299, 331
FaqI GGGAC 2 cut(s) 332, 806
FatI CATG 7 cut(s) 130, 268, 605, 660, 729, 862, 907
FbaI TGATCA 2 cut(s) 775, 921
Fnu4HI GCNGC 3 cut(s) 615, 630, 831
FokI GGATG 2 cut(s) 6, 128
Fsp4HI GCNGC 3 cut(s) 615, 630, 831
FspBI CTAG 1 cut(s) 561
GlaI GCGC 1 cut(s) 543
GluI GCNGC 3 cut(s) 615, 630, 831
GsuI CTGGAG 1 cut(s) 396
HapII CCGG 1 cut(s) 23
HgaI GACGC 1 cut(s) 207
HhaI GCGC 1 cut(s) 544
Hin1II CATG 7 cut(s) 134, 272, 609, 664, 733, 866, 911
Hin6I GCGC 1 cut(s) 542
HinP1I GCGC 1 cut(s) 542
HindIII AAGCTT 2 cut(s) 701, 916
HinfI GANTC 2 cut(s) 106, 503
HpaII CCGG 1 cut(s) 23
Hpy166II GTNNAC 1 cut(s) 788
Hpy188I TCNGA 1 cut(s) 709
Hpy188III TCNNGA 5 cut(s) 8, 23, 413, 730, 925
Hpy8I GTNNAC 1 cut(s) 788
HpyAV CCTTC 1 cut(s) 412
HpyCH4III ACNGT 1 cut(s) 942
HpyCH4V TGCA 8 cut(s) 72, 334, 344, 380, 500, 755, 793, 876
HpyF10VI GCNNNNNNNGC 1 cut(s) 497
HpyF3I CTNAG 2 cut(s) 643, 903
Hsp92II CATG 7 cut(s) 134, 272, 609, 664, 733, 866, 911
HspAI GCGC 1 cut(s) 542
Kpn2I TCCGGA 1 cut(s) 22
Ksp22I TGATCA 2 cut(s) 775, 921
Kzo9I GATC 5 cut(s) 4, 563, 775, 887, 921
LmnI GCTCC 1 cut(s) 265
Lsp1109I GCAGC 3 cut(s) 601, 616, 817
LweI GCATC 1 cut(s) 817
MaeI CTAG 1 cut(s) 561
MaeIII GTNAC 3 cut(s) 163, 223, 421
MalI GATC 5 cut(s) 6, 565, 777, 889, 923
MboI GATC 5 cut(s) 4, 563, 775, 887, 921
MboII GAAGA 4 cut(s) 58, 285, 302, 815
MfeI CAATTG 2 cut(s) 621, 840
MhlI GDGCHC 1 cut(s) 588
MluCI AATT 5 cut(s) 329, 495, 621, 692, 840
MlyI GAGTC 1 cut(s) 512
MmeI TCCRAC 1 cut(s) 146
MnlI CCTC 6 cut(s) 181, 567, 619, 657, 726, 844
MroI TCCGGA 1 cut(s) 22
MroXI GAANNNNTTC 1 cut(s) 36
MslI CAYNNNNRTG 1 cut(s) 861
MspA1I CMGCKG 2 cut(s) 230, 614
MspI CCGG 1 cut(s) 23
MspR9I CCNGG 2 cut(s) 147, 156
MunI CAATTG 2 cut(s) 621, 840
Mva1269I GAATGC 1 cut(s) 725
MvaI CCWGG 2 cut(s) 147, 156
MwoI GCNNNNNNNGC 1 cut(s) 497
NdeII GATC 5 cut(s) 4, 563, 775, 887, 921
NlaIII CATG 7 cut(s) 134, 272, 609, 664, 733, 866, 911
NlaIV GGNNCC 2 cut(s) 786, 822
NmuCI GTSAC 1 cut(s) 223
NspI RCATGY 2 cut(s) 866, 911
PaeI GCATGC 1 cut(s) 866
PagI TCATGA 1 cut(s) 729
PctI GAATGC 1 cut(s) 725
PdmI GAANNNNTTC 1 cut(s) 36
PfeI GAWTC 1 cut(s) 106
PkrI GCNGC 3 cut(s) 616, 631, 832
PleI GAGTC 1 cut(s) 511
PpsI GAGTC 1 cut(s) 511
PpuMI RGGWCCY 1 cut(s) 820
PsiI TTATAA 1 cut(s) 174
Psp5II RGGWCCY 1 cut(s) 820
Psp6I CCWGG 2 cut(s) 145, 154
PspGI CCWGG 2 cut(s) 145, 154
PspN4I GGNNCC 2 cut(s) 786, 822
PspPI GGNCC 2 cut(s) 785, 820
PspPPI RGGWCCY 1 cut(s) 820
PstI CTGCAG 1 cut(s) 346
PvuII CAGCTG 2 cut(s) 230, 614
RsaI GTAC 1 cut(s) 653
RsaNI GTAC 1 cut(s) 652
RseI CAYNNNNRTG 1 cut(s) 861
SatI GCNGC 3 cut(s) 615, 630, 831
Sau3AI GATC 5 cut(s) 4, 563, 775, 887, 921
Sau96I GGNCC 2 cut(s) 785, 820
SchI GAGTC 1 cut(s) 512
ScrFI CCNGG 2 cut(s) 147, 156
SduI GDGCHC 1 cut(s) 588
SfaNI GCATC 1 cut(s) 817
SfcI CTRYAG 1 cut(s) 342
SinI GGWCC 2 cut(s) 785, 820
SmiMI CAYNNNNRTG 1 cut(s) 861
SmlI CTYRAG 1 cut(s) 526
SmoI CTYRAG 1 cut(s) 526
SphI GCATGC 1 cut(s) 866
Sse9I AATT 5 cut(s) 329, 495, 621, 692, 840
SspMI CTAG 1 cut(s) 561
StyD4I CCNGG 2 cut(s) 145, 154
StyI CCWWGG 1 cut(s) 595
TaaI ACNGT 1 cut(s) 942
TaqI TCGA 2 cut(s) 30, 40
TaqII GACCGA 1 cut(s) 704
TasI AATT 5 cut(s) 329, 495, 621, 692, 840
TfiI GAWTC 1 cut(s) 106
TscAI CASTG 4 cut(s) 785, 795, 883, 945
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 3 cut(s) 614, 629, 830
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 4 cut(s) 119, 130, 307, 718
TspRI CASTG 4 cut(s) 785, 795, 883, 945
VpaK11BI GGWCC 2 cut(s) 785, 820
XapI RAATTY 1 cut(s) 692
XceI RCATGY 2 cut(s) 866, 911
XmnI GAANNNNTTC 1 cut(s) 36
XspI CTAG 1 cut(s) 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.