RchiOBHm_Chr3g0475321

UPF0554 protein C2orf43 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0002532
Physical Location & Seq
Reverse (-)
21151110 .. 21151897
788 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44083

Sequence Viewer

Length: 258 bp
ATGGATCAGGACATTTCACAACGTGAAAACCAAGTGCTTCGAGTGAAGAAGCGTGTCGCATTTCGTTTATGCGATGTGTCGAGTCACACTACTGAAGTAATGGAGATTCAAGCTGACAATCCAACATTTCATGTTCTAATCATCCCTGGAAATCCAGGTGTTGTTACATTTTATAAAGACTTTGTGGAGGCTCTATATGAGCTGCTGGGTGGAAATGCGTCTGTGACAGGCAAGACTTGGGTTTTTGTCCTATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LIDHydrolase

Protein Analysis

85

Amino Acids

9.59

Weight (kDa)

5.53

Isoelectric Point (pI)

22.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LIDHydrolase PF10230 42 - 77 1.6e-08 Lipid-droplet associated hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 174
AclWI GGATC 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 114
AdeI CACNNNGTG 1 cut(s) 23
AgsI TTSAA 1 cut(s) 110
AjnI CCWGG 2 cut(s) 145, 154
AluBI AGCT 2 cut(s) 113, 202
AluI AGCT 2 cut(s) 113, 202
AlwI GGATC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 202
BbvI GCAGC 1 cut(s) 189
BciT130I CCWGG 2 cut(s) 147, 156
BisI GCNGC 1 cut(s) 203
BlsI GCNGC 1 cut(s) 204
Bme1390I CCNGG 2 cut(s) 147, 156
BmrFI CCNGG 2 cut(s) 147, 156
BsaJI CCNNGG 1 cut(s) 145
BseBI CCWGG 2 cut(s) 147, 156
BseDI CCNNGG 1 cut(s) 145
BseGI GGATG 1 cut(s) 141
BseXI GCAGC 1 cut(s) 189
BseYI CCCAGC 1 cut(s) 205
Bsp143I GATC 1 cut(s) 4
BspPI GGATC 1 cut(s) 12
BssECI CCNNGG 1 cut(s) 145
BssMI GATC 1 cut(s) 4
Bst2UI CCWGG 2 cut(s) 147, 156
BstF5I GGATG 1 cut(s) 141
BstKTI GATC 1 cut(s) 7
BstMBI GATC 1 cut(s) 4
BstNI CCWGG 2 cut(s) 147, 156
BstSCI CCNGG 2 cut(s) 145, 154
BstV1I GCAGC 1 cut(s) 189
BtgZI GCGATG 1 cut(s) 87
BtsCI GGATG 1 cut(s) 141
CseI GACGC 1 cut(s) 207
CviAII CATG 1 cut(s) 131
CviJI RGCY 3 cut(s) 113, 191, 202
CviKI_1 RGCY 3 cut(s) 113, 191, 202
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
DraIII CACNNNGTG 1 cut(s) 23
Eco57I CTGAAG 1 cut(s) 114
EcoRII CCWGG 2 cut(s) 145, 154
FaeI CATG 1 cut(s) 134
FaiI YATR 6 cut(s) 70, 132, 174, 196, 198, 253
FatI CATG 1 cut(s) 130
Fnu4HI GCNGC 1 cut(s) 203
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 1 cut(s) 203
GluI GCNGC 1 cut(s) 203
GsaI CCCAGC 1 cut(s) 209
HgaI GACGC 1 cut(s) 207
Hin1II CATG 1 cut(s) 134
HinfI GANTC 2 cut(s) 82, 106
Hpy188III TCNNGA 1 cut(s) 8
HpyCH4IV ACGT 1 cut(s) 22
HpySE526I ACGT 1 cut(s) 22
Hsp92II CATG 1 cut(s) 134
Kzo9I GATC 1 cut(s) 4
LpnPI CCDG 6 cut(s) 132, 141, 159, 168, 191, 213
Lsp1109I GCAGC 1 cut(s) 189
MaeII ACGT 1 cut(s) 22
MaeIII GTNAC 3 cut(s) 83, 163, 223
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 1 cut(s) 58
MlyI GAGTC 1 cut(s) 91
MmeI TCCRAC 1 cut(s) 146
MnlI CCTC 1 cut(s) 181
MseI TTAA 1 cut(s) 256
MspR9I CCNGG 2 cut(s) 147, 156
MvaI CCWGG 2 cut(s) 147, 156
NdeII GATC 1 cut(s) 4
NlaIII CATG 1 cut(s) 134
NmuCI GTSAC 2 cut(s) 83, 223
PfeI GAWTC 1 cut(s) 106
PkrI GCNGC 1 cut(s) 204
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
PsiI TTATAA 1 cut(s) 174
Psp6I CCWGG 2 cut(s) 145, 154
PspFI CCCAGC 1 cut(s) 205
PspGI CCWGG 2 cut(s) 145, 154
SaqAI TTAA 1 cut(s) 256
SatI GCNGC 1 cut(s) 203
Sau3AI GATC 1 cut(s) 4
SchI GAGTC 1 cut(s) 91
ScrFI CCNGG 2 cut(s) 147, 156
SetI ASST 4 cut(s) 25, 115, 160, 204
StyD4I CCNGG 2 cut(s) 145, 154
TaiI ACGT 1 cut(s) 25
TaqI TCGA 2 cut(s) 40, 80
TfiI GAWTC 1 cut(s) 106
Tru1I TTAA 1 cut(s) 256
Tru9I TTAA 1 cut(s) 256
TseFI GTSAC 2 cut(s) 83, 223
TseI GCWGC 1 cut(s) 202
Tsp45I GTSAC 2 cut(s) 83, 223
TspDTI ATGAA 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.