RchiOBHm_Chr3g0475311

UPF0554 protein C2orf43 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0002532
Physical Location & Seq
Reverse (-)
21146241 .. 21151108
4868 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44082

Sequence Viewer

Length: 750 bp
ATGACTATTCTAATTTGCTTGGATTGTTCAGTTGTTGGGCATATATCACACACCAAAAAGAACTGGGAGCATGGAAGGATTTTCTCATTACAAGCCCAAATTAATCACAAGATGGACTTCATCAAACAGGAATTGCAAAATACTGCAGGCCCTTTATTACTGGTAGGGCACTCTATTGGATCATATATATCCATGGAAATGTTTAGGAGGTCTCCAGAACAGGTGACTTATTGTGTTGGGCTATATCCGTTTTTGGCGTTAAACCCAGAGTCCACAAAACAGGCCCTTATTGGGAAGATTACAGAGTCCCGCATTGTATGTGTTGCCTTGAGCTTTATTGTTGCGCTCTTGGGATTGTTGCCTATATCACTTTTGAGGTTAATTGTGCTCACATTCCTTGGGAAGTCATGGTCAGCTGCTGCAGTTGAGGCTGCTTGCTATCACTTGGTAAAGTACCACACAATGCGGAATATTCTCTTTATGGCAATGACAGAATTCCAAAAGCTTTCAGAAACACCAGATTGGGAATTCATGAGGGAAAATCTGGACAAGATAGCATTTTTGTTCGGCATTGATGATCACTGGGCTCCACTGCAAATGTTTGAAGAGATTGCCGAGCAGGTCCCTGGTGTTGCTCTTTCAATTGAACGAGAGGGTCATACTACTCATGGTTTCTGTTGCACTGAAGCTGGCTCATTGTGGGTTGCTGAGCAGGTAGCAAGCTTGATCAAGATTAAAGTTTCATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LIDHydrolase

Protein Analysis

249

Amino Acids

28.0

Weight (kDa)

6.2

Isoelectric Point (pI)

40.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LIDHydrolase PF10230 7 - 226 1.4e-53 Lipid-droplet associated hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 610, 703
AciI CCGC 2 cut(s) 310, 466
AclWI GGATC 1 cut(s) 187
AcsI RAATTY 2 cut(s) 494, 527
AcuI CTGAAG 1 cut(s) 705
AfaI GTAC 1 cut(s) 455
AfiI CCNNNNNNNGG 1 cut(s) 291
AgsI TTSAA 3 cut(s) 605, 642, 647
AjnI CCWGG 1 cut(s) 625
AluBI AGCT 5 cut(s) 333, 416, 505, 689, 723
AluI AGCT 5 cut(s) 333, 416, 505, 689, 723
Alw21I GWGCWC 1 cut(s) 390
Alw26I GTCTC 1 cut(s) 216
AlwI GGATC 1 cut(s) 187
AlwNI CAGNNNCTG 1 cut(s) 419
AoxI GGCC 2 cut(s) 148, 282
ApeKI GCWGC 3 cut(s) 416, 419, 431
ApoI RAATTY 2 cut(s) 494, 527
AseI ATTAAT 1 cut(s) 102
AspLEI GCGC 1 cut(s) 346
AspS9I GGNCC 3 cut(s) 149, 283, 622
AsuHPI GGTGA 1 cut(s) 235
AvaII GGWCC 1 cut(s) 622
BaeGI GKGCMC 1 cut(s) 171
BanII GRGCYC 1 cut(s) 589
Bbv12I GWGCWC 1 cut(s) 390
BbvI GCAGC 3 cut(s) 403, 406, 418
BccI CCATC 1 cut(s) 106
BciT130I CCWGG 1 cut(s) 627
BclI TGATCA 2 cut(s) 577, 726
BcoDI GTCTC 1 cut(s) 216
BfmI CTRYAG 2 cut(s) 144, 420
BfuAI ACCTGC 2 cut(s) 610, 703
BisI GCNGC 3 cut(s) 417, 420, 432
BlpI GCTNAGC 1 cut(s) 708
BlsI GCNGC 3 cut(s) 418, 421, 433
Bme1390I CCNGG 1 cut(s) 627
Bme18I GGWCC 1 cut(s) 622
BmgT120I GGNCC 3 cut(s) 149, 283, 622
BmiI GGNNCC 2 cut(s) 588, 624
BmrFI CCNGG 1 cut(s) 627
BmrI ACTGGG 2 cut(s) 73, 592
BmuI ACTGGG 2 cut(s) 73, 592
BpmI CTGGAG 1 cut(s) 198
Bpu1102I GCTNAGC 1 cut(s) 708
BpuEI CTTGAG 1 cut(s) 349
BsaI GGTCTC 1 cut(s) 216
BsaJI CCNNGG 3 cut(s) 192, 397, 625
Bsc4I CCNNNNNNNGG 1 cut(s) 291
Bse1I ACTGG 3 cut(s) 68, 165, 587
Bse3DI GCAATG 1 cut(s) 492
BseBI CCWGG 1 cut(s) 627
BseDI CCNNGG 3 cut(s) 192, 397, 625
BseLI CCNNNNNNNGG 1 cut(s) 291
BseMI GCAATG 1 cut(s) 492
BseMII CTCAG 1 cut(s) 699
BseNI ACTGG 3 cut(s) 68, 165, 587
BseSI GKGCMC 1 cut(s) 171
BseXI GCAGC 3 cut(s) 403, 406, 418
BshFI GGCC 2 cut(s) 150, 284
BsiHKAI GWGCWC 1 cut(s) 390
BslFI GGGAC 2 cut(s) 292, 608
BslI CCNNNNNNNGG 1 cut(s) 291
BsmAI GTCTC 1 cut(s) 216
BsmFI GGGAC 2 cut(s) 292, 608
BsnI GGCC 2 cut(s) 150, 284
Bso31I GGTCTC 1 cut(s) 216
Bsp1286I GDGCHC 3 cut(s) 171, 390, 589
Bsp143I GATC 3 cut(s) 179, 577, 726
Bsp1720I GCTNAGC 1 cut(s) 708
Bsp19I CCATGG 1 cut(s) 192
BspACI CCGC 2 cut(s) 310, 466
BspANI GGCC 2 cut(s) 150, 284
BspCNI CTCAG 1 cut(s) 700
BspHI TCATGA 1 cut(s) 531
BspLI GGNNCC 2 cut(s) 588, 624
BspMAI CTGCAG 2 cut(s) 148, 424
BspMI ACCTGC 2 cut(s) 610, 703
BspPI GGATC 1 cut(s) 187
BspTNI GGTCTC 1 cut(s) 216
BsrDI GCAATG 1 cut(s) 492
BsrI ACTGG 3 cut(s) 68, 165, 587
BssECI CCNNGG 3 cut(s) 192, 397, 625
BssMI GATC 3 cut(s) 179, 577, 726
BssT1I CCWWGG 2 cut(s) 192, 397
Bst2UI CCWGG 1 cut(s) 627
Bst6I CTCTTC 1 cut(s) 600
BstC8I GCNNGC 4 cut(s) 148, 436, 691, 721
BstDEI CTNAG 1 cut(s) 708
BstDSI CCRYGG 1 cut(s) 192
BstHHI GCGC 1 cut(s) 346
BstKTI GATC 3 cut(s) 182, 580, 729
BstMAI GTCTC 1 cut(s) 216
BstMBI GATC 3 cut(s) 179, 577, 726
BstMWI GCNNNNNNNGC 1 cut(s) 428
BstNI CCWGG 1 cut(s) 627
BstSCI CCNGG 1 cut(s) 625
BstSFI CTRYAG 2 cut(s) 144, 420
BstSLI GKGCMC 1 cut(s) 171
BstV1I GCAGC 3 cut(s) 403, 406, 418
BsuRI GGCC 2 cut(s) 150, 284
BtgI CCRYGG 1 cut(s) 192
BtsI GCAGTG 1 cut(s) 590
BtsIMutI CAGTG 3 cut(s) 580, 590, 681
BveI ACCTGC 2 cut(s) 610, 703
Cac8I GCNNGC 4 cut(s) 148, 436, 691, 721
CaiI CAGNNNCTG 1 cut(s) 419
CciI TCATGA 1 cut(s) 531
CfoI GCGC 1 cut(s) 346
Cfr13I GGNCC 3 cut(s) 149, 283, 622
Csp6I GTAC 1 cut(s) 454
CviAII CATG 5 cut(s) 71, 193, 408, 532, 668
CviQI GTAC 1 cut(s) 454
DdeI CTNAG 1 cut(s) 708
DpnI GATC 3 cut(s) 181, 579, 728
DpnII GATC 3 cut(s) 179, 577, 726
Eam1104I CTCTTC 1 cut(s) 600
EarI CTCTTC 1 cut(s) 600
Eco130I CCWWGG 2 cut(s) 192, 397
Eco24I GRGCYC 1 cut(s) 589
Eco31I GGTCTC 1 cut(s) 216
Eco47I GGWCC 1 cut(s) 622
Eco57I CTGAAG 1 cut(s) 705
EcoO109I RGGNCCY 3 cut(s) 149, 283, 622
EcoRI GAATTC 2 cut(s) 494, 527
EcoRII CCWGG 1 cut(s) 625
EcoT14I CCWWGG 2 cut(s) 192, 397
EcoT38I GRGCYC 1 cut(s) 589
ErhI CCWWGG 2 cut(s) 192, 397
FaeI CATG 5 cut(s) 74, 196, 411, 535, 671
FalI AAGNNNNNCTT 2 cut(s) 101, 133
FaqI GGGAC 2 cut(s) 292, 608
FatI CATG 5 cut(s) 70, 192, 407, 531, 667
FauI CCCGC 1 cut(s) 317
FbaI TGATCA 2 cut(s) 577, 726
Fnu4HI GCNGC 3 cut(s) 417, 420, 432
FriOI GRGCYC 1 cut(s) 589
Fsp4HI GCNGC 3 cut(s) 417, 420, 432
GlaI GCGC 1 cut(s) 345
GluI GCNGC 3 cut(s) 417, 420, 432
GsuI CTGGAG 1 cut(s) 198
HaeIII GGCC 2 cut(s) 150, 284
HhaI GCGC 1 cut(s) 346
Hin1II CATG 5 cut(s) 74, 196, 411, 535, 671
Hin6I GCGC 1 cut(s) 344
HinP1I GCGC 1 cut(s) 344
HindIII AAGCTT 2 cut(s) 503, 721
HinfI GANTC 2 cut(s) 269, 305
HphI GGTGA 1 cut(s) 235
Hpy166II GTNNAC 1 cut(s) 273
Hpy188I TCNGA 1 cut(s) 511
Hpy188III TCNNGA 4 cut(s) 215, 532, 545, 730
Hpy8I GTNNAC 1 cut(s) 273
HpyAV CCTTC 1 cut(s) 69
HpyCH4V TGCA 5 cut(s) 136, 146, 422, 595, 681
HpyF10VI GCNNNNNNNGC 1 cut(s) 428
HpyF3I CTNAG 1 cut(s) 708
Hsp92II CATG 5 cut(s) 74, 196, 411, 535, 671
HspAI GCGC 1 cut(s) 344
Ksp22I TGATCA 2 cut(s) 577, 726
Kzo9I GATC 3 cut(s) 179, 577, 726
LmnI GCTCC 2 cut(s) 67, 592
Lsp1109I GCAGC 3 cut(s) 403, 406, 418
MaeIII GTNAC 1 cut(s) 223
MalI GATC 3 cut(s) 181, 579, 728
MboI GATC 3 cut(s) 179, 577, 726
MboII GAAGA 2 cut(s) 307, 617
MfeI CAATTG 1 cut(s) 642
MhlI GDGCHC 3 cut(s) 171, 390, 589
MluCI AATT 7 cut(s) 12, 99, 131, 381, 494, 527, 642
MlyI GAGTC 2 cut(s) 278, 314
MnlI CCTC 5 cut(s) 201, 369, 421, 528, 646
MseI TTAA 4 cut(s) 102, 260, 380, 735
MslI CAYNNNNRTG 1 cut(s) 197
MspA1I CMGCKG 1 cut(s) 416
MspR9I CCNGG 1 cut(s) 627
MunI CAATTG 1 cut(s) 642
MvaI CCWGG 1 cut(s) 627
MwoI GCNNNNNNNGC 1 cut(s) 428
NcoI CCATGG 1 cut(s) 192
NdeII GATC 3 cut(s) 179, 577, 726
NlaIII CATG 5 cut(s) 74, 196, 411, 535, 671
NlaIV GGNNCC 2 cut(s) 588, 624
NmeAIII GCCGAG 1 cut(s) 640
NmuCI GTSAC 1 cut(s) 223
PagI TCATGA 1 cut(s) 531
PkrI GCNGC 3 cut(s) 418, 421, 433
PleI GAGTC 2 cut(s) 277, 313
PpsI GAGTC 2 cut(s) 277, 313
PpuMI RGGWCCY 1 cut(s) 622
PshBI ATTAAT 1 cut(s) 102
Psp5II RGGWCCY 1 cut(s) 622
Psp6I CCWGG 1 cut(s) 625
PspGI CCWGG 1 cut(s) 625
PspN4I GGNNCC 2 cut(s) 588, 624
PspPI GGNCC 3 cut(s) 149, 283, 622
PspPPI RGGWCCY 1 cut(s) 622
PstI CTGCAG 2 cut(s) 148, 424
PstNI CAGNNNCTG 1 cut(s) 419
PvuII CAGCTG 1 cut(s) 416
RsaI GTAC 1 cut(s) 455
RsaNI GTAC 1 cut(s) 454
RseI CAYNNNNRTG 1 cut(s) 197
SaqAI TTAA 4 cut(s) 102, 260, 380, 735
SatI GCNGC 3 cut(s) 417, 420, 432
Sau3AI GATC 3 cut(s) 179, 577, 726
Sau96I GGNCC 3 cut(s) 149, 283, 622
SchI GAGTC 2 cut(s) 278, 314
ScrFI CCNGG 1 cut(s) 627
SduI GDGCHC 3 cut(s) 171, 390, 589
SfcI CTRYAG 2 cut(s) 144, 420
SinI GGWCC 1 cut(s) 622
SmiMI CAYNNNNRTG 1 cut(s) 197
SmlI CTYRAG 1 cut(s) 328
SmoI CTYRAG 1 cut(s) 328
Sse9I AATT 7 cut(s) 12, 99, 131, 381, 494, 527, 642
SsiI CCGC 2 cut(s) 310, 466
SspI AATATT 1 cut(s) 472
StyD4I CCNGG 1 cut(s) 625
StyI CCWWGG 2 cut(s) 192, 397
TasI AATT 7 cut(s) 12, 99, 131, 381, 494, 527, 642
Tru1I TTAA 4 cut(s) 102, 260, 380, 735
Tru9I TTAA 4 cut(s) 102, 260, 380, 735
TscAI CASTG 3 cut(s) 587, 597, 688
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 3 cut(s) 416, 419, 431
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 3 cut(s) 109, 520, 732
TspGWI ACGGA 1 cut(s) 237
TspRI CASTG 3 cut(s) 587, 597, 688
VpaK11BI GGWCC 1 cut(s) 622
VspI ATTAAT 1 cut(s) 102
XapI RAATTY 2 cut(s) 494, 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.