Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002532

Physical Location & Seq

Genomic Coordinates Reverse (-)

2874210 .. 2880302

Gene Structure 6093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g03190.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGCTTCTTCGGCTCTTTTCTATCTCACGCTCTTCTGGTTTCAGTTATATAAGGCCAAGGGCAAGCTACAGATTATACTGTGGAAGCAGAGAAATGGGTGAGCAGGAAAATTCAGAATCTGAAGCGATTCGAGTGAAGAGGCGTGCTACGTTTCGTATATGCAATGTGTCAAGTTTCACCACTGAAATACTGGAGATCCCTGCTGACAATCCAGCATTGCATGTTCTTGTTATACCTGGAAATCCAGGTGTTGTTTCATTTTACAAAGACTTTGTGGAGTCACTGTATGAGTTGCTGGATGGAACTGCTTCTGTGACAGCTGTTGGGCATATATCTCACACCAAAAAGAACTGGGAGCATGGAAGGCTGTTCTCATTGCAAGAACAAATTGATCATAAGATGGACTTCATCAAACAGGAGTTGCAAAATAATGAAGTTCCTATATTACTGGTTGGGCACTCTATTGGTTCATATATATCTCTAGAAATGTTCCAGAAGTCTCCAGAGAAGGTGACATTTTGTGTTGGACTATATCCTTTTTTGGCCTTAAACCGACAATCCGTACAGCAGTCTTTCATTGGGAAGCTTGCAGCGTCCCGTATTCTAAGTGTTGTCTTGAGCTTAATTGTTGCACTCTTGGGATTGTTTCCTATCCGATTGTTGAGTTTAATTGTGACCACATTCCTTGGGAAGCTCTGGTCAGCTACTGCAATTGAGGCTACTTGCTCTCACTTGGTAAAGTACCATACCATGCGGAATGTCCTCTTCATGGCAATGACAGAATTCAGAAAGCTTTCAGCAACACCAGATTGGGCATTCATGAGGGGAAACCAGCACAAAATAGCATTTTTGTTCGGCATTGACGATCACTGGGGTCCATTGCAAATGTTTGAAGAGATTTCCAAGCAGGTCCCAGATGTTGCTCTATCAATTGAAAGAGAGGGCCACACTCATGCTTTTGGTTGCACTGAGGCTGGCTCATTGTGGGTTGCTGAGCATGTAGCAGGCTTGATCAAGAACAATCAAGCATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIDHydrolase

Protein Analysis

345

Amino Acids

38.67

Weight (kDa)

7.74

Isoelectric Point (pI)

41.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002532)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11620 AT3G11620 AT3G11620 AT3G11620 AT3G11620 AT3G11620 AT3G11620 AT3G11620 AT3G11620
fragaria_vesca	FvH4_6g19910 FvH4_6g19910 FvH4_6g19910 FvH4_6g19910 FvH4_6g19910 FvH4_6g19910 FvH4_6g19910 FvH4_6g19910 FvH4_6g19910 FvH4_6g19910 FvH4_6g19910 FvH4_6g19910 FvH4_6g19910
malus_domestica	MD12G1034600.v1.1 MD14G1035800.v1.1
prunus_persica	Prupe.7G098300_v2.0.a1 Prupe.7G098300_v2.0.a1
pyrus_communis	pycom12g03190
rosa_chinensis	RchiOBHm_Chr3g0475311 RchiOBHm_Chr3g0475321
rosa_laevigata	RLG00000023852
rosa_multiflora	Rmu_ssc0000140.1_g000007
rosa_roxburghii	Rroxscaffold_6G00406390
rosa_rugosa	Rorug03G0147900 Rorug03G0148000 Rorug03G0148000 Rorug03G0148100 Rorug03G0148200
rosa_samantha	Rh3AG198000 Rh3BG228200 Rh3DG223400
rosa_wichuraiana	Rw3G017990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	898
AciI	CCGC	1 cut(s)	754
AclWI	GGATC	1 cut(s)	190
AcsI	RAATTY	2 cut(s)	109, 782
AcuI	CTGAAG	1 cut(s)	141
AfaI	GTAC	2 cut(s)	564, 743
AfiI	CCNNNNNNNGG	1 cut(s)	769
AgsI	TTSAA	2 cut(s)	893, 935
AjnI	CCWGG	2 cut(s)	235, 244
AluBI	AGCT	7 cut(s)	66, 320, 586, 621, 694, 704, 793
AluI	AGCT	7 cut(s)	66, 320, 586, 621, 694, 704, 793
Alw26I	GTCTC	1 cut(s)	504
AlwI	GGATC	1 cut(s)	190
AlwNI	CAGNNNCTG	2 cut(s)	119, 707
AoxI	GGCC	3 cut(s)	53, 543, 943
ApeKI	GCWGC	1 cut(s)	590
ApoI	RAATTY	2 cut(s)	109, 782
Asp700I	GAANNNNTTC	3 cut(s)	126, 307, 793
AspS9I	GGNCC	3 cut(s)	875, 910, 943
AsuHPI	GGTGA	3 cut(s)	110, 169, 523
AvaII	GGWCC	2 cut(s)	875, 910
BaeGI	GKGCMC	1 cut(s)	459
BbvI	GCAGC	1 cut(s)	602
BccI	CCATC	2 cut(s)	293, 394
BciT130I	CCWGG	2 cut(s)	237, 246
BclI	TGATCA	2 cut(s)	391, 1011
BcoDI	GTCTC	1 cut(s)	504
BfaI	CTAG	1 cut(s)	482
BfmI	CTRYAG	1 cut(s)	67
BfuAI	ACCTGC	1 cut(s)	898
BisI	GCNGC	1 cut(s)	591
BlpI	GCTNAGC	1 cut(s)	993
BlsI	GCNGC	1 cut(s)	592
Bme1390I	CCNGG	2 cut(s)	237, 246
Bme18I	GGWCC	2 cut(s)	875, 910
BmgT120I	GGNCC	3 cut(s)	875, 910, 943
BmiI	GGNNCC	2 cut(s)	876, 912
BmrFI	CCNGG	2 cut(s)	237, 246
BmrI	ACTGGG	2 cut(s)	361, 880
BmuI	ACTGGG	2 cut(s)	361, 880
BplI	GAGNNNNNCTC	2 cut(s)	962, 994
BpmI	CTGGAG	2 cut(s)	212, 486
Bpu1102I	GCTNAGC	1 cut(s)	993
BpuEI	CTTGAG	1 cut(s)	637
BsaJI	CCNNGG	2 cut(s)	56, 685
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bsc4I	CCNNNNNNNGG	1 cut(s)	769
Bse1I	ACTGG	4 cut(s)	195, 356, 453, 875
Bse3DI	GCAATG	5 cut(s)	169, 215, 374, 780, 878
BseBI	CCWGG	2 cut(s)	237, 246
BseDI	CCNNGG	2 cut(s)	56, 685
BseGI	GGATG	1 cut(s)	304
BseLI	CCNNNNNNNGG	1 cut(s)	769
BseMI	GCAATG	5 cut(s)	169, 215, 374, 780, 878
BseMII	CTCAG	2 cut(s)	960, 984
BseNI	ACTGG	4 cut(s)	195, 356, 453, 875
BseSI	GKGCMC	1 cut(s)	459
BseXI	GCAGC	1 cut(s)	602
BshFI	GGCC	3 cut(s)	55, 545, 945
BslFI	GGGAC	2 cut(s)	580, 896
BslI	CCNNNNNNNGG	1 cut(s)	769
BsmAI	GTCTC	1 cut(s)	504
BsmFI	GGGAC	2 cut(s)	580, 896
BsmI	GAATGC	1 cut(s)	815
BsnI	GGCC	3 cut(s)	55, 545, 945
Bsp1286I	GDGCHC	1 cut(s)	459
Bsp143I	GATC	4 cut(s)	195, 391, 865, 1011
Bsp1720I	GCTNAGC	1 cut(s)	993
BspACI	CCGC	1 cut(s)	754
BspANI	GGCC	3 cut(s)	55, 545, 945
BspCNI	CTCAG	2 cut(s)	961, 985
BspHI	TCATGA	1 cut(s)	819
BspLI	GGNNCC	2 cut(s)	876, 912
BspMI	ACCTGC	1 cut(s)	898
BspPI	GGATC	1 cut(s)	190
BspQI	GCTCTTC	1 cut(s)	37
BsrDI	GCAATG	5 cut(s)	169, 215, 374, 780, 878
BsrI	ACTGG	4 cut(s)	195, 356, 453, 875
BssECI	CCNNGG	2 cut(s)	56, 685
BssMI	GATC	4 cut(s)	195, 391, 865, 1011
BssT1I	CCWWGG	2 cut(s)	56, 685
Bst2UI	CCWGG	2 cut(s)	237, 246
Bst4CI	ACNGT	2 cut(s)	80, 285
Bst6I	CTCTTC	4 cut(s)	37, 131, 770, 888
BstC8I	GCNNGC	5 cut(s)	64, 144, 588, 976, 1006
BstDEI	CTNAG	3 cut(s)	605, 969, 993
BstF5I	GGATG	1 cut(s)	304
BstKTI	GATC	4 cut(s)	198, 394, 868, 1014
BstMAI	GTCTC	1 cut(s)	504
BstMBI	GATC	4 cut(s)	195, 391, 865, 1011
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 364, 716
BstNI	CCWGG	2 cut(s)	237, 246
BstNSI	RCATGY	2 cut(s)	224, 1001
BstSCI	CCNGG	2 cut(s)	235, 244
BstSFI	CTRYAG	1 cut(s)	67
BstSLI	GKGCMC	1 cut(s)	459
BstV1I	GCAGC	1 cut(s)	602
BstX2I	RGATCY	1 cut(s)	195
BstYI	RGATCY	1 cut(s)	195
BsuRI	GGCC	3 cut(s)	55, 545, 945
BtsCI	GGATG	1 cut(s)	304
BtsIMutI	CAGTG	4 cut(s)	180, 281, 868, 966
BveI	ACCTGC	1 cut(s)	898
Cac8I	GCNNGC	5 cut(s)	64, 144, 588, 976, 1006
CaiI	CAGNNNCTG	2 cut(s)	119, 707
CciI	TCATGA	1 cut(s)	819
Cfr13I	GGNCC	3 cut(s)	875, 910, 943
CseI	GACGC	1 cut(s)	582
Csp6I	GTAC	2 cut(s)	563, 742
CspCI	CAANNNNNGTGG	2 cut(s)	667, 702
CviAII	CATG	7 cut(s)	221, 359, 751, 769, 820, 953, 998
CviQI	GTAC	2 cut(s)	563, 742
DdeI	CTNAG	3 cut(s)	605, 969, 993
DpnI	GATC	4 cut(s)	197, 393, 867, 1013
DpnII	GATC	4 cut(s)	195, 391, 865, 1011
Eam1104I	CTCTTC	4 cut(s)	37, 131, 770, 888
EarI	CTCTTC	4 cut(s)	37, 131, 770, 888
Eco130I	CCWWGG	2 cut(s)	56, 685
Eco47I	GGWCC	2 cut(s)	875, 910
Eco57I	CTGAAG	1 cut(s)	141
EcoO109I	RGGNCCY	1 cut(s)	910
EcoRI	GAATTC	1 cut(s)	782
EcoRII	CCWGG	2 cut(s)	235, 244
EcoT14I	CCWWGG	2 cut(s)	56, 685
ErhI	CCWWGG	2 cut(s)	56, 685
FaeI	CATG	7 cut(s)	224, 362, 754, 772, 823, 956, 1001
FalI	AAGNNNNNCTT	2 cut(s)	389, 421
FaqI	GGGAC	2 cut(s)	580, 896
FatI	CATG	7 cut(s)	220, 358, 750, 768, 819, 952, 997
FbaI	TGATCA	2 cut(s)	391, 1011
Fnu4HI	GCNGC	1 cut(s)	591
FokI	GGATG	1 cut(s)	311
Fsp4HI	GCNGC	1 cut(s)	591
FspBI	CTAG	1 cut(s)	482
GluI	GCNGC	1 cut(s)	591
GsuI	CTGGAG	2 cut(s)	212, 486
HaeIII	GGCC	3 cut(s)	55, 545, 945
HgaI	GACGC	1 cut(s)	582
Hin1II	CATG	7 cut(s)	224, 362, 754, 772, 823, 956, 1001
HindIII	AAGCTT	2 cut(s)	584, 791
HinfI	GANTC	3 cut(s)	116, 127, 278
HphI	GGTGA	3 cut(s)	110, 169, 523
Hpy188I	TCNGA	4 cut(s)	115, 121, 656, 788
Hpy188III	TCNNGA	6 cut(s)	482, 493, 503, 616, 820, 1015
HpyAV	CCTTC	2 cut(s)	357, 502
HpyCH4III	ACNGT	2 cut(s)	80, 285
HpyCH4IV	ACGT	1 cut(s)	149
HpyCH4V	TGCA	9 cut(s)	162, 220, 379, 424, 590, 632, 710, 883, 966
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 364, 716
HpyF3I	CTNAG	3 cut(s)	605, 969, 993
HpySE526I	ACGT	1 cut(s)	149
Hsp92II	CATG	7 cut(s)	224, 362, 754, 772, 823, 956, 1001
Ksp22I	TGATCA	2 cut(s)	391, 1011
Kzo9I	GATC	4 cut(s)	195, 391, 865, 1011
LguI	GCTCTTC	1 cut(s)	37
LmnI	GCTCC	1 cut(s)	355
Lsp1109I	GCAGC	1 cut(s)	602
MaeI	CTAG	1 cut(s)	482
MaeII	ACGT	1 cut(s)	149
MaeIII	GTNAC	4 cut(s)	279, 313, 511, 673
MalI	GATC	4 cut(s)	197, 393, 867, 1013
MboI	GATC	4 cut(s)	195, 391, 865, 1011
MboII	GAAGA	4 cut(s)	24, 148, 757, 905
MfeI	CAATTG	2 cut(s)	711, 930
MflI	RGATCY	1 cut(s)	195
MhlI	GDGCHC	1 cut(s)	459
MluCI	AATT	7 cut(s)	109, 387, 624, 669, 711, 782, 930
MlyI	GAGTC	1 cut(s)	287
MmeI	TCCRAC	1 cut(s)	505
MnlI	CCTC	6 cut(s)	132, 709, 773, 816, 934, 964
MroXI	GAANNNNTTC	3 cut(s)	126, 307, 793
MseI	TTAA	3 cut(s)	548, 623, 668
MslI	CAYNNNNRTG	2 cut(s)	773, 951
MspA1I	CMGCKG	1 cut(s)	320
MspR9I	CCNGG	2 cut(s)	237, 246
MunI	CAATTG	2 cut(s)	711, 930
Mva1269I	GAATGC	1 cut(s)	815
MvaI	CCWGG	2 cut(s)	237, 246
MwoI	GCNNNNNNNGC	3 cut(s)	10, 364, 716
NdeII	GATC	4 cut(s)	195, 391, 865, 1011
NlaIII	CATG	7 cut(s)	224, 362, 754, 772, 823, 956, 1001
NlaIV	GGNNCC	2 cut(s)	876, 912
NmuCI	GTSAC	4 cut(s)	279, 313, 511, 673
NspI	RCATGY	2 cut(s)	224, 1001
PagI	TCATGA	1 cut(s)	819
PciSI	GCTCTTC	1 cut(s)	37
PcsI	WCGNNNNNNNCGW	1 cut(s)	861
PctI	GAATGC	1 cut(s)	815
PdmI	GAANNNNTTC	3 cut(s)	126, 307, 793
PfeI	GAWTC	2 cut(s)	116, 127
PkrI	GCNGC	1 cut(s)	592
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
PpuMI	RGGWCCY	1 cut(s)	910
Psp5II	RGGWCCY	1 cut(s)	910
Psp6I	CCWGG	2 cut(s)	235, 244
PspGI	CCWGG	2 cut(s)	235, 244
PspN4I	GGNNCC	2 cut(s)	876, 912
PspPI	GGNCC	3 cut(s)	875, 910, 943
PspPPI	RGGWCCY	1 cut(s)	910
PstNI	CAGNNNCTG	2 cut(s)	119, 707
PsuI	RGATCY	1 cut(s)	195
PvuII	CAGCTG	1 cut(s)	320
RsaI	GTAC	2 cut(s)	564, 743
RsaNI	GTAC	2 cut(s)	563, 742
RseI	CAYNNNNRTG	2 cut(s)	773, 951
SapI	GCTCTTC	1 cut(s)	37
SaqAI	TTAA	3 cut(s)	548, 623, 668
SatI	GCNGC	1 cut(s)	591
Sau3AI	GATC	4 cut(s)	195, 391, 865, 1011
Sau96I	GGNCC	3 cut(s)	875, 910, 943
SchI	GAGTC	1 cut(s)	287
ScrFI	CCNGG	2 cut(s)	237, 246
SduI	GDGCHC	1 cut(s)	459
SfcI	CTRYAG	1 cut(s)	67
SinI	GGWCC	2 cut(s)	875, 910
SmiMI	CAYNNNNRTG	2 cut(s)	773, 951
SmlI	CTYRAG	1 cut(s)	616
SmoI	CTYRAG	1 cut(s)	616
Sse9I	AATT	7 cut(s)	109, 387, 624, 669, 711, 782, 930
SsiI	CCGC	1 cut(s)	754
SspMI	CTAG	1 cut(s)	482
StyD4I	CCNGG	2 cut(s)	235, 244
StyI	CCWWGG	2 cut(s)	56, 685
TaaI	ACNGT	2 cut(s)	80, 285
TaiI	ACGT	1 cut(s)	152
TaqI	TCGA	1 cut(s)	130
TasI	AATT	7 cut(s)	109, 387, 624, 669, 711, 782, 930
TfiI	GAWTC	2 cut(s)	116, 127
Tru1I	TTAA	3 cut(s)	548, 623, 668
Tru9I	TTAA	3 cut(s)	548, 623, 668
TscAI	CASTG	4 cut(s)	187, 288, 875, 973
TseFI	GTSAC	4 cut(s)	279, 313, 511, 673
TseI	GCWGC	1 cut(s)	590
Tsp45I	GTSAC	4 cut(s)	279, 313, 511, 673
TspDTI	ATGAA	7 cut(s)	246, 397, 447, 459, 565, 757, 808
TspGWI	ACGGA	1 cut(s)	550
TspRI	CASTG	4 cut(s)	187, 288, 875, 973
VpaK11BI	GGWCC	2 cut(s)	875, 910
XapI	RAATTY	2 cut(s)	109, 782
XbaI	TCTAGA	1 cut(s)	481
XceI	RCATGY	2 cut(s)	224, 1001
XcmI	CCANNNNNNNNNTGG	1 cut(s)	187
XmnI	GAANNNNTTC	3 cut(s)	126, 307, 793
XspI	CTAG	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.