Rw3G017990

UPF0554 protein C2orf43 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0002532
Physical Location & Seq
Reverse (-)
19830115 .. 19835822
5708 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G017990.1

Sequence Viewer

Length: 915 bp
ATGGATGAGGGCATTTCACAACGTGAAAACCAAGTGCTTCGAGTGAAGAAGCGTGTCGCATTTCGTTTATGCGATGTGTCGAGTCACACTACTGAAGTAATGGAGATTCAAGCTGACAATCCAACATTTCATGTTCTAATCATCCCTGGAAATCCAGGTGTTGTTACATTTTATAAAGACTTTGTGGAGGCTCTATATGAGCTGCTGGGTGGAACTGCGTCTGTGACAGTTGTTGGGCATATATCACACACCAAAAAGAACTGGGAGCATGGAAGGATTTTCTCATTACAAGCCCAAATTAATCACAAGATGGACTTCATCAAACAGGAATTGCAAAATACTGCAGGCCCTTTATTACTGGTAGGGCACTCTATTGGATCATACATATCCATGGAAATGTTTAGGAGGTCTCCAGAACAGGTGACTTATTGTGTTGGGCTATATCCATTTATGGCGTTAAACCCAGAGTCCACAAAGCAGGCTCTTATTGGAAAGATTACAGAGTCCCGCATTGTATGTGTTGCCTTGAGCTTTATTGTTGCGCTCTTGGGATTGTTGCCTATATCACTTTTGAGGTTAATTGTGCTCACATTCCTTGGGAAGTCATGGTCAGCTGCTGCAGTTGAGGCTGCTTGCTCTCACTTGGTAAAGTACCACACAATGCGGAATATTCTCTTTATGGCAATGACAGAATTCCAAAAGCTTTCAGAAACACCAGATTGGGCATTCATGAGGGAAAATCTGGACAAGATAGCATTTTTGTTGGCATTGATGATCACTGGGCTCCACTGCAAATGTTTGAAGAGATTGCCGAGCAGGTCCCTGGTGTTGCTCTTTCAATTGAACGAGAGGGTCATGCTACTCATGGTTTCTGTTGCACTGAAGCTGGCTCATTGTGGGTTGCTGAGCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LIDHydrolase

Protein Analysis

304

Amino Acids

34.16

Weight (kDa)

9.06

Isoelectric Point (pI)

35.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LIDHydrolase PF10230 42 - 255 1.6e-55 Lipid-droplet associated hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 174
Acc36I ACCTGC 2 cut(s) 807, 900
AciI CCGC 2 cut(s) 508, 664
AclWI GGATC 1 cut(s) 385
AcsI RAATTY 1 cut(s) 692
AcuI CTGAAG 2 cut(s) 114, 902
AdeI CACNNNGTG 1 cut(s) 23
AfaI GTAC 1 cut(s) 653
AgsI TTSAA 4 cut(s) 110, 802, 839, 844
AjnI CCWGG 3 cut(s) 145, 154, 822
AluBI AGCT 6 cut(s) 113, 202, 531, 614, 703, 886
AluI AGCT 6 cut(s) 113, 202, 531, 614, 703, 886
Alw21I GWGCWC 1 cut(s) 588
Alw26I GTCTC 1 cut(s) 414
AlwI GGATC 1 cut(s) 385
AlwNI CAGNNNCTG 1 cut(s) 617
AoxI GGCC 1 cut(s) 346
ApeKI GCWGC 4 cut(s) 202, 614, 617, 629
ApoI RAATTY 1 cut(s) 692
AseI ATTAAT 1 cut(s) 300
AspLEI GCGC 1 cut(s) 544
AspS9I GGNCC 2 cut(s) 347, 819
AsuHPI GGTGA 1 cut(s) 433
AvaII GGWCC 1 cut(s) 819
BaeGI GKGCMC 1 cut(s) 369
BanII GRGCYC 1 cut(s) 786
Bbv12I GWGCWC 1 cut(s) 588
BbvI GCAGC 4 cut(s) 189, 601, 604, 616
BccI CCATC 1 cut(s) 304
BciT130I CCWGG 3 cut(s) 147, 156, 824
BclI TGATCA 1 cut(s) 774
BcoDI GTCTC 1 cut(s) 414
BfmI CTRYAG 2 cut(s) 342, 618
BfuAI ACCTGC 2 cut(s) 807, 900
BisI GCNGC 4 cut(s) 203, 615, 618, 630
BlpI GCTNAGC 1 cut(s) 905
BlsI GCNGC 4 cut(s) 204, 616, 619, 631
Bme1390I CCNGG 3 cut(s) 147, 156, 824
Bme18I GGWCC 1 cut(s) 819
BmgT120I GGNCC 2 cut(s) 347, 819
BmiI GGNNCC 2 cut(s) 785, 821
BmrFI CCNGG 3 cut(s) 147, 156, 824
BmrI ACTGGG 2 cut(s) 271, 789
BmuI ACTGGG 2 cut(s) 271, 789
BpmI CTGGAG 1 cut(s) 396
Bpu1102I GCTNAGC 1 cut(s) 905
BpuEI CTTGAG 1 cut(s) 547
BsaI GGTCTC 1 cut(s) 414
BsaJI CCNNGG 4 cut(s) 145, 390, 595, 822
Bse1I ACTGG 3 cut(s) 266, 363, 784
Bse3DI GCAATG 1 cut(s) 690
BseBI CCWGG 3 cut(s) 147, 156, 824
BseDI CCNNGG 4 cut(s) 145, 390, 595, 822
BseGI GGATG 2 cut(s) 10, 141
BseMI GCAATG 1 cut(s) 690
BseMII CTCAG 1 cut(s) 896
BseNI ACTGG 3 cut(s) 266, 363, 784
BseSI GKGCMC 1 cut(s) 369
BseXI GCAGC 4 cut(s) 189, 601, 604, 616
BseYI CCCAGC 1 cut(s) 205
BshFI GGCC 1 cut(s) 348
BsiHKAI GWGCWC 1 cut(s) 588
BslFI GGGAC 2 cut(s) 490, 805
BsmAI GTCTC 1 cut(s) 414
BsmFI GGGAC 2 cut(s) 490, 805
BsmI GAATGC 1 cut(s) 725
BsnI GGCC 1 cut(s) 348
Bso31I GGTCTC 1 cut(s) 414
Bsp1286I GDGCHC 3 cut(s) 369, 588, 786
Bsp143I GATC 2 cut(s) 377, 774
Bsp1720I GCTNAGC 1 cut(s) 905
Bsp19I CCATGG 1 cut(s) 390
BspACI CCGC 2 cut(s) 508, 664
BspANI GGCC 1 cut(s) 348
BspCNI CTCAG 1 cut(s) 897
BspHI TCATGA 1 cut(s) 729
BspLI GGNNCC 2 cut(s) 785, 821
BspMAI CTGCAG 2 cut(s) 346, 622
BspMI ACCTGC 2 cut(s) 807, 900
BspPI GGATC 1 cut(s) 385
BspTNI GGTCTC 1 cut(s) 414
BsrDI GCAATG 1 cut(s) 690
BsrI ACTGG 3 cut(s) 266, 363, 784
BssECI CCNNGG 4 cut(s) 145, 390, 595, 822
BssMI GATC 2 cut(s) 377, 774
BssT1I CCWWGG 2 cut(s) 390, 595
Bst2UI CCWGG 3 cut(s) 147, 156, 824
Bst4CI ACNGT 1 cut(s) 229
Bst6I CTCTTC 1 cut(s) 797
BstC8I GCNNGC 4 cut(s) 346, 480, 634, 888
BstDEI CTNAG 1 cut(s) 905
BstDSI CCRYGG 1 cut(s) 390
BstF5I GGATG 2 cut(s) 10, 141
BstHHI GCGC 1 cut(s) 544
BstKTI GATC 2 cut(s) 380, 777
BstMAI GTCTC 1 cut(s) 414
BstMBI GATC 2 cut(s) 377, 774
BstMWI GCNNNNNNNGC 1 cut(s) 626
BstNI CCWGG 3 cut(s) 147, 156, 824
BstSCI CCNGG 3 cut(s) 145, 154, 822
BstSFI CTRYAG 2 cut(s) 342, 618
BstSLI GKGCMC 1 cut(s) 369
BstV1I GCAGC 4 cut(s) 189, 601, 604, 616
BsuRI GGCC 1 cut(s) 348
BtgI CCRYGG 1 cut(s) 390
BtgZI GCGATG 1 cut(s) 87
BtsCI GGATG 2 cut(s) 10, 141
BtsI GCAGTG 1 cut(s) 787
BtsIMutI CAGTG 3 cut(s) 777, 787, 878
BveI ACCTGC 2 cut(s) 807, 900
Cac8I GCNNGC 4 cut(s) 346, 480, 634, 888
CaiI CAGNNNCTG 1 cut(s) 617
CciI TCATGA 1 cut(s) 729
CfoI GCGC 1 cut(s) 544
Cfr13I GGNCC 2 cut(s) 347, 819
CseI GACGC 1 cut(s) 207
Csp6I GTAC 1 cut(s) 652
CviAII CATG 7 cut(s) 131, 269, 391, 606, 730, 856, 865
CviQI GTAC 1 cut(s) 652
DdeI CTNAG 1 cut(s) 905
DpnI GATC 2 cut(s) 379, 776
DpnII GATC 2 cut(s) 377, 774
DraIII CACNNNGTG 1 cut(s) 23
Eam1104I CTCTTC 1 cut(s) 797
EarI CTCTTC 1 cut(s) 797
Eco130I CCWWGG 2 cut(s) 390, 595
Eco24I GRGCYC 1 cut(s) 786
Eco31I GGTCTC 1 cut(s) 414
Eco47I GGWCC 1 cut(s) 819
Eco57I CTGAAG 2 cut(s) 114, 902
EcoO109I RGGNCCY 2 cut(s) 347, 819
EcoRI GAATTC 1 cut(s) 692
EcoRII CCWGG 3 cut(s) 145, 154, 822
EcoT14I CCWWGG 2 cut(s) 390, 595
EcoT38I GRGCYC 1 cut(s) 786
ErhI CCWWGG 2 cut(s) 390, 595
FaeI CATG 7 cut(s) 134, 272, 394, 609, 733, 859, 868
FalI AAGNNNNNCTT 2 cut(s) 299, 331
FaqI GGGAC 2 cut(s) 490, 805
FatI CATG 7 cut(s) 130, 268, 390, 605, 729, 855, 864
FauI CCCGC 1 cut(s) 515
FbaI TGATCA 1 cut(s) 774
Fnu4HI GCNGC 4 cut(s) 203, 615, 618, 630
FokI GGATG 2 cut(s) 17, 128
FriOI GRGCYC 1 cut(s) 786
Fsp4HI GCNGC 4 cut(s) 203, 615, 618, 630
GlaI GCGC 1 cut(s) 543
GluI GCNGC 4 cut(s) 203, 615, 618, 630
GsaI CCCAGC 1 cut(s) 209
GsuI CTGGAG 1 cut(s) 396
HaeIII GGCC 1 cut(s) 348
HgaI GACGC 1 cut(s) 207
HhaI GCGC 1 cut(s) 544
Hin1II CATG 7 cut(s) 134, 272, 394, 609, 733, 859, 868
Hin6I GCGC 1 cut(s) 542
HinP1I GCGC 1 cut(s) 542
HindIII AAGCTT 1 cut(s) 701
HinfI GANTC 4 cut(s) 82, 106, 467, 503
HphI GGTGA 1 cut(s) 433
Hpy166II GTNNAC 1 cut(s) 471
Hpy188I TCNGA 1 cut(s) 709
Hpy188III TCNNGA 3 cut(s) 413, 730, 743
Hpy8I GTNNAC 1 cut(s) 471
HpyAV CCTTC 1 cut(s) 267
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4IV ACGT 1 cut(s) 22
HpyCH4V TGCA 5 cut(s) 334, 344, 620, 792, 878
HpyF10VI GCNNNNNNNGC 1 cut(s) 626
HpyF3I CTNAG 1 cut(s) 905
HpySE526I ACGT 1 cut(s) 22
Hsp92II CATG 7 cut(s) 134, 272, 394, 609, 733, 859, 868
HspAI GCGC 1 cut(s) 542
Ksp22I TGATCA 1 cut(s) 774
Kzo9I GATC 2 cut(s) 377, 774
LmnI GCTCC 2 cut(s) 265, 789
Lsp1109I GCAGC 4 cut(s) 189, 601, 604, 616
MaeII ACGT 1 cut(s) 22
MaeIII GTNAC 4 cut(s) 83, 163, 223, 421
MalI GATC 2 cut(s) 379, 776
MboI GATC 2 cut(s) 377, 774
MboII GAAGA 2 cut(s) 58, 814
MfeI CAATTG 1 cut(s) 839
MhlI GDGCHC 3 cut(s) 369, 588, 786
MluCI AATT 5 cut(s) 297, 329, 579, 692, 839
MlyI GAGTC 3 cut(s) 91, 476, 512
MmeI TCCRAC 1 cut(s) 146
MnlI CCTC 6 cut(s) 181, 399, 567, 619, 726, 843
MseI TTAA 3 cut(s) 300, 458, 578
MslI CAYNNNNRTG 2 cut(s) 389, 395
MspA1I CMGCKG 1 cut(s) 614
MspR9I CCNGG 3 cut(s) 147, 156, 824
MunI CAATTG 1 cut(s) 839
Mva1269I GAATGC 1 cut(s) 725
MvaI CCWGG 3 cut(s) 147, 156, 824
MwoI GCNNNNNNNGC 1 cut(s) 626
NcoI CCATGG 1 cut(s) 390
NdeII GATC 2 cut(s) 377, 774
NlaIII CATG 7 cut(s) 134, 272, 394, 609, 733, 859, 868
NlaIV GGNNCC 2 cut(s) 785, 821
NmeAIII GCCGAG 1 cut(s) 837
NmuCI GTSAC 3 cut(s) 83, 223, 421
PagI TCATGA 1 cut(s) 729
PctI GAATGC 1 cut(s) 725
PfeI GAWTC 1 cut(s) 106
PkrI GCNGC 4 cut(s) 204, 616, 619, 631
PleI GAGTC 3 cut(s) 90, 475, 511
PpsI GAGTC 3 cut(s) 90, 475, 511
PpuMI RGGWCCY 1 cut(s) 819
PshBI ATTAAT 1 cut(s) 300
PsiI TTATAA 1 cut(s) 174
Psp5II RGGWCCY 1 cut(s) 819
Psp6I CCWGG 3 cut(s) 145, 154, 822
PspFI CCCAGC 1 cut(s) 205
PspGI CCWGG 3 cut(s) 145, 154, 822
PspN4I GGNNCC 2 cut(s) 785, 821
PspPI GGNCC 2 cut(s) 347, 819
PspPPI RGGWCCY 1 cut(s) 819
PstI CTGCAG 2 cut(s) 346, 622
PstNI CAGNNNCTG 1 cut(s) 617
PvuII CAGCTG 1 cut(s) 614
RsaI GTAC 1 cut(s) 653
RsaNI GTAC 1 cut(s) 652
RseI CAYNNNNRTG 2 cut(s) 389, 395
SaqAI TTAA 3 cut(s) 300, 458, 578
SatI GCNGC 4 cut(s) 203, 615, 618, 630
Sau3AI GATC 2 cut(s) 377, 774
Sau96I GGNCC 2 cut(s) 347, 819
SchI GAGTC 3 cut(s) 91, 476, 512
ScrFI CCNGG 3 cut(s) 147, 156, 824
SduI GDGCHC 3 cut(s) 369, 588, 786
SfcI CTRYAG 2 cut(s) 342, 618
SinI GGWCC 1 cut(s) 819
SmiMI CAYNNNNRTG 2 cut(s) 389, 395
SmlI CTYRAG 1 cut(s) 526
SmoI CTYRAG 1 cut(s) 526
Sse9I AATT 5 cut(s) 297, 329, 579, 692, 839
SsiI CCGC 2 cut(s) 508, 664
SspI AATATT 1 cut(s) 670
StyD4I CCNGG 3 cut(s) 145, 154, 822
StyI CCWWGG 2 cut(s) 390, 595
TaaI ACNGT 1 cut(s) 229
TaiI ACGT 1 cut(s) 25
TaqI TCGA 2 cut(s) 40, 80
TasI AATT 5 cut(s) 297, 329, 579, 692, 839
TfiI GAWTC 1 cut(s) 106
Tru1I TTAA 3 cut(s) 300, 458, 578
Tru9I TTAA 3 cut(s) 300, 458, 578
TscAI CASTG 3 cut(s) 784, 794, 885
TseFI GTSAC 3 cut(s) 83, 223, 421
TseI GCWGC 4 cut(s) 202, 614, 617, 629
Tsp45I GTSAC 3 cut(s) 83, 223, 421
TspDTI ATGAA 3 cut(s) 119, 307, 718
TspRI CASTG 3 cut(s) 784, 794, 885
VpaK11BI GGWCC 1 cut(s) 819
VspI ATTAAT 1 cut(s) 300
XapI RAATTY 1 cut(s) 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.