AT3G11620

Lipid-droplet associated hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0002532
Physical Location & Seq
Reverse (-)
3669319 .. 3672207
2889 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G11620.6

Sequence Viewer

Length: 939 bp
ATGGAGACTCAAAACAAATTGATGAATGAAACTAAAAGACATGTTAAATCCAGATTGTGCAGAGTTTCTGGTTCGATGACGGAGATGATGGAAATTCAAGCTGAGAATCCCACATTCCATGTATTGTTTATTCCGGGAAATCCAGGAGTTGTGTCATTTTACAAGGACTTTTTGGAATCTTTATACGAGTTTCTTGGTGGAAATGCTTCTGTAATTGCTATTGGGCAAATATCTCACACGAGCAAGGACTGGGAGTCTGGGAGGCTATTTTCATTTCAAGAACAAATTGATCATAAGATTGATTTTATCAGACAGGAGTTGGAGAGTGTGAAAGTTCCAATAATATTGGTTGGGCATTCTATTGGGTCTTATATATCCCTTGAGTTATTGAAGAAATTCTCGGACAAGGTGGTATATTGCATTGGCCTATATCCATTTTTGACTTTGAACCAACAATCAACAAAGCAATCATTAATTGGCAAACTTGCAGCGTCTTCTGTTCTGTCGGCTACAGCAAGTTTTCTGATTGCATCGCTGAGACTTTTACCTATGTCAGCTGCACGGCTGCTTGTATCTAAATCCATTGGAGCTTCATGGTCTGATACTGCTGTTCAAGCTACCTGCACTCACTTGAGGCAGTATCACACCATGCGCAATGTTCTCTTCATGGCAAAGTCAGAGTTTAGAGAGCTTGCAGCAGAGCCAGATTGGGATTTCATGAGAGAAAACCAGAGCAAGCTTGCATTTTTATTTGGCATTGATGATCATTGGGGTCCACTGCAACTCTTTGAAGAGATTTCAAAGCAAGCTCCGCATACTTCCTTATCTATCGAGAGGGAAGGTCACACGCACGGATTCTGCTGCACGGTGGCTGGCTCGGCATGGGTTGCGCAGCACGTAGCCACTCTAATCAAGAACCGGTTTTCACAGCTCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LIDHydrolase

Protein Analysis

312

Amino Acids

35.09

Weight (kDa)

7.2

Isoelectric Point (pI)

34.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LIDHydrolase PF10230 13 - 262 3.9e-76 Lipid-droplet associated hydrolase
Abhydrolase_6 PF12697 16 - 259 5e-08 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 653, 891
Acc36I ACCTGC 1 cut(s) 629
AciI CCGC 1 cut(s) 812
AcsI RAATTY 2 cut(s) 93, 395
AflIII ACRYGT 1 cut(s) 40
AgeI ACCGGT 1 cut(s) 918
AgsI TTSAA 7 cut(s) 98, 278, 391, 448, 614, 791, 801
AhdI GACNNNNNGTC 1 cut(s) 253
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 8 cut(s) 101, 557, 590, 617, 691, 739, 809, 931
AluI AGCT 8 cut(s) 101, 557, 590, 617, 691, 739, 809, 931
Alw26I GTCTC 1 cut(s) 532
AoxI GGCC 1 cut(s) 424
ApeKI GCWGC 6 cut(s) 488, 557, 565, 695, 861, 892
ApoI RAATTY 2 cut(s) 93, 395
AseI ATTAAT 1 cut(s) 473
AsiGI ACCGGT 1 cut(s) 918
Asp700I GAANNNNTTC 2 cut(s) 205, 395
AspLEI GCGC 2 cut(s) 654, 892
AspS9I GGNCC 1 cut(s) 773
AsuC2I CCSGG 1 cut(s) 135
AvaII GGWCC 1 cut(s) 773
BaeI ACNNNNGTAYC 2 cut(s) 594, 627
BauI CACGAG 1 cut(s) 238
BbsI GAAGAC 1 cut(s) 486
BbvI GCAGC 6 cut(s) 500, 544, 552, 707, 848, 904
BccI CCATC 1 cut(s) 82
BceAI ACGGC 1 cut(s) 578
BciT130I CCWGG 1 cut(s) 144
BclI TGATCA 2 cut(s) 289, 763
BcnI CCSGG 1 cut(s) 135
BcoDI GTCTC 1 cut(s) 532
BfmI CTRYAG 1 cut(s) 510
BfuAI ACCTGC 1 cut(s) 629
BisI GCNGC 6 cut(s) 489, 558, 566, 696, 862, 893
BlsI GCNGC 6 cut(s) 490, 559, 567, 697, 863, 894
Bme1390I CCNGG 2 cut(s) 135, 144
Bme18I GGWCC 1 cut(s) 773
BmeRI GACNNNNNGTC 1 cut(s) 253
BmgT120I GGNCC 1 cut(s) 773
BmiI GGNNCC 1 cut(s) 774
BmrFI CCNGG 2 cut(s) 135, 144
BmrI ACTGGG 1 cut(s) 259
BmsI GCATC 1 cut(s) 539
BmuI ACTGGG 1 cut(s) 259
BpiI GAAGAC 1 cut(s) 486
BpmI CTGGAG 1 cut(s) 917
BpuEI CTTGAG 2 cut(s) 401, 652
BpuMI CCSGG 1 cut(s) 135
BsaAI YACGTR 1 cut(s) 898
BsaWI WCCGGW 1 cut(s) 918
Bse118I RCCGGY 1 cut(s) 918
Bse1I ACTGG 2 cut(s) 254, 934
Bse3DI GCAATG 1 cut(s) 661
BseBI CCWGG 1 cut(s) 144
BseMI GCAATG 1 cut(s) 661
BseMII CTCAG 2 cut(s) 93, 527
BseNI ACTGG 2 cut(s) 254, 934
BseXI GCAGC 6 cut(s) 500, 544, 552, 707, 848, 904
BsgI GTGCAG 4 cut(s) 79, 543, 607, 847
BshFI GGCC 1 cut(s) 426
BshTI ACCGGT 1 cut(s) 918
BsiSI CCGG 2 cut(s) 134, 919
BsmAI GTCTC 1 cut(s) 532
BsmI GAATGC 1 cut(s) 355
BsnI GGCC 1 cut(s) 426
Bsp143I GATC 2 cut(s) 289, 763
BspACI CCGC 1 cut(s) 812
BspANI GGCC 1 cut(s) 426
BspCNI CTCAG 2 cut(s) 94, 528
BspHI TCATGA 1 cut(s) 717
BspLI GGNNCC 1 cut(s) 774
BspMI ACCTGC 1 cut(s) 629
BsrDI GCAATG 1 cut(s) 661
BsrFI RCCGGY 1 cut(s) 918
BsrI ACTGG 2 cut(s) 254, 934
BssAI RCCGGY 1 cut(s) 918
BssMI GATC 2 cut(s) 289, 763
BssSI CACGAG 1 cut(s) 238
Bst2BI CACGAG 1 cut(s) 238
Bst2UI CCWGG 1 cut(s) 144
Bst4CI ACNGT 1 cut(s) 868
Bst6I CTCTTC 2 cut(s) 668, 786
BstAPI GCANNNNNTGC 1 cut(s) 887
BstBAI YACGTR 1 cut(s) 898
BstC8I GCNNGC 5 cut(s) 693, 737, 741, 807, 874
BstDEI CTNAG 2 cut(s) 102, 536
BstHHI GCGC 2 cut(s) 654, 892
BstKTI GATC 2 cut(s) 292, 766
BstMAI GTCTC 1 cut(s) 532
BstMBI GATC 2 cut(s) 289, 763
BstMWI GCNNNNNNNGC 4 cut(s) 614, 811, 878, 887
BstNI CCWGG 1 cut(s) 144
BstNSI RCATGY 1 cut(s) 44
BstSCI CCNGG 2 cut(s) 133, 142
BstSFI CTRYAG 1 cut(s) 510
BstV1I GCAGC 6 cut(s) 500, 544, 552, 707, 848, 904
BstV2I GAAGAC 1 cut(s) 486
BsuRI GGCC 1 cut(s) 426
BtgZI GCGATG 1 cut(s) 516
BtsI GCAGTG 1 cut(s) 776
BtsIMutI CAGTG 1 cut(s) 776
BveI ACCTGC 1 cut(s) 629
Cac8I GCNNGC 5 cut(s) 693, 737, 741, 807, 874
CciI TCATGA 1 cut(s) 717
CfoI GCGC 2 cut(s) 654, 892
Cfr10I RCCGGY 1 cut(s) 918
Cfr13I GGNCC 1 cut(s) 773
CseI GACGC 1 cut(s) 480
CspAI ACCGGT 1 cut(s) 918
CviAII CATG 7 cut(s) 41, 119, 594, 649, 667, 718, 882
DdeI CTNAG 2 cut(s) 102, 536
DpnI GATC 2 cut(s) 291, 765
DpnII GATC 2 cut(s) 289, 763
DriI GACNNNNNGTC 1 cut(s) 253
Eam1104I CTCTTC 2 cut(s) 668, 786
Eam1105I GACNNNNNGTC 1 cut(s) 253
EarI CTCTTC 2 cut(s) 668, 786
Eco47I GGWCC 1 cut(s) 773
EcoRII CCWGG 1 cut(s) 142
FaeI CATG 7 cut(s) 44, 122, 597, 652, 670, 721, 885
FatI CATG 7 cut(s) 40, 118, 593, 648, 666, 717, 881
FbaI TGATCA 2 cut(s) 289, 763
Fnu4HI GCNGC 6 cut(s) 489, 558, 566, 696, 862, 893
Fsp4HI GCNGC 6 cut(s) 489, 558, 566, 696, 862, 893
FspI TGCGCA 2 cut(s) 653, 891
GlaI GCGC 2 cut(s) 653, 891
GluI GCNGC 6 cut(s) 489, 558, 566, 696, 862, 893
GsuI CTGGAG 1 cut(s) 917
HaeIII GGCC 1 cut(s) 426
HapII CCGG 2 cut(s) 134, 919
HgaI GACGC 1 cut(s) 480
HhaI GCGC 2 cut(s) 654, 892
Hin1II CATG 7 cut(s) 44, 122, 597, 652, 670, 721, 885
Hin6I GCGC 2 cut(s) 652, 890
HinP1I GCGC 2 cut(s) 652, 890
HindIII AAGCTT 1 cut(s) 737
HinfI GANTC 5 cut(s) 7, 106, 176, 254, 855
HpaII CCGG 2 cut(s) 134, 919
Hpy166II GTNNAC 1 cut(s) 776
Hpy188I TCNGA 5 cut(s) 311, 403, 525, 601, 679
Hpy188III TCNNGA 5 cut(s) 51, 278, 718, 832, 913
Hpy8I GTNNAC 1 cut(s) 776
HpyAV CCTTC 1 cut(s) 833
HpyCH4III ACNGT 1 cut(s) 868
HpyCH4IV ACGT 1 cut(s) 897
HpyF10VI GCNNNNNNNGC 4 cut(s) 614, 811, 878, 887
HpyF3I CTNAG 2 cut(s) 102, 536
HpySE526I ACGT 1 cut(s) 897
Hsp92II CATG 7 cut(s) 44, 122, 597, 652, 670, 721, 885
HspAI GCGC 2 cut(s) 652, 890
Ksp22I TGATCA 2 cut(s) 289, 763
Kzo9I GATC 2 cut(s) 289, 763
LmnI GCTCC 3 cut(s) 587, 814, 936
Lsp1109I GCAGC 6 cut(s) 500, 544, 552, 707, 848, 904
LweI GCATC 1 cut(s) 539
MaeII ACGT 1 cut(s) 897
MaeIII GTNAC 1 cut(s) 842
MalI GATC 2 cut(s) 291, 765
MboI GATC 2 cut(s) 289, 763
MboII GAAGA 4 cut(s) 403, 486, 655, 803
MluCI AATT 6 cut(s) 17, 93, 213, 285, 395, 474
MlyI GAGTC 1 cut(s) 263
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 3 cut(s) 255, 627, 828
MroXI GAANNNNTTC 2 cut(s) 205, 395
MseI TTAA 2 cut(s) 45, 473
MspA1I CMGCKG 1 cut(s) 557
MspI CCGG 2 cut(s) 134, 919
MspR9I CCNGG 2 cut(s) 135, 144
Mva1269I GAATGC 1 cut(s) 355
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 4 cut(s) 614, 811, 878, 887
NciI CCSGG 1 cut(s) 135
NdeII GATC 2 cut(s) 289, 763
NlaIII CATG 7 cut(s) 44, 122, 597, 652, 670, 721, 885
NlaIV GGNNCC 1 cut(s) 774
NmeAIII GCCGAG 1 cut(s) 857
NmuCI GTSAC 1 cut(s) 842
NsbI TGCGCA 2 cut(s) 653, 891
NspI RCATGY 1 cut(s) 44
PagI TCATGA 1 cut(s) 717
PciI ACATGT 1 cut(s) 40
PctI GAATGC 1 cut(s) 355
PdmI GAANNNNTTC 2 cut(s) 205, 395
PfeI GAWTC 3 cut(s) 106, 176, 855
PfoI TCCNGGA 2 cut(s) 133, 142
PinAI ACCGGT 1 cut(s) 918
PkrI GCNGC 6 cut(s) 490, 559, 567, 697, 863, 894
PleI GAGTC 1 cut(s) 262
PpsI GAGTC 1 cut(s) 262
Ppu21I YACGTR 1 cut(s) 898
PscI ACATGT 1 cut(s) 40
PshBI ATTAAT 1 cut(s) 473
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 1 cut(s) 774
PspPI GGNCC 1 cut(s) 773
PvuII CAGCTG 1 cut(s) 557
SaqAI TTAA 2 cut(s) 45, 473
SatI GCNGC 6 cut(s) 489, 558, 566, 696, 862, 893
Sau3AI GATC 2 cut(s) 289, 763
Sau96I GGNCC 1 cut(s) 773
SchI GAGTC 1 cut(s) 263
ScrFI CCNGG 2 cut(s) 135, 144
SfaNI GCATC 1 cut(s) 539
SfcI CTRYAG 1 cut(s) 510
SinI GGWCC 1 cut(s) 773
SmlI CTYRAG 2 cut(s) 380, 631
SmoI CTYRAG 2 cut(s) 380, 631
Sse9I AATT 6 cut(s) 17, 93, 213, 285, 395, 474
SsiI CCGC 1 cut(s) 812
SspI AATATT 1 cut(s) 345
StyD4I CCNGG 2 cut(s) 133, 142
TaaI ACNGT 1 cut(s) 868
TaiI ACGT 1 cut(s) 900
TaqI TCGA 2 cut(s) 74, 831
TasI AATT 6 cut(s) 17, 93, 213, 285, 395, 474
TfiI GAWTC 3 cut(s) 106, 176, 855
Tru1I TTAA 2 cut(s) 45, 473
Tru9I TTAA 2 cut(s) 45, 473
TscAI CASTG 1 cut(s) 783
TseFI GTSAC 1 cut(s) 842
TseI GCWGC 6 cut(s) 488, 557, 565, 695, 861, 892
Tsp45I GTSAC 1 cut(s) 842
TspDTI ATGAA 6 cut(s) 38, 42, 261, 582, 655, 706
TspGWI ACGGA 2 cut(s) 95, 867
TspRI CASTG 1 cut(s) 783
VpaK11BI GGWCC 1 cut(s) 773
VspI ATTAAT 1 cut(s) 473
XapI RAATTY 2 cut(s) 93, 395
XceI RCATGY 1 cut(s) 44
XmnI GAANNNNTTC 2 cut(s) 205, 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.