Rroxscaffold_6G00406390

UPF0554 protein C2orf43 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0002532
Physical Location & Seq
Forward (+)
28855027 .. 28860855
5829 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00406390.1

Sequence Viewer

Length: 1032 bp
ATGGATCAGGACATTTCACAACGTGAAAACCAAGTGCTTCGAGTGAAGAAGCGTGTCGCATTTCGTTTATGCGATGTGTCAAGTCACACTACTGAAGTAATGGAGATTCAAGCTGACAATCCAACATTTCATGTTCTAATCATCCCTGGAAATCCAGGTGTTGTTACATTTTATAAAGACTTTGTGGAGGCTCTATATGAGCTGCTGGGTGGAACTGCGTCTGTGACAGGCAAGACTTGGTTGTTGGGCATATATCACACACCAAAAAGGTATTGCAGTTCTTTTCTTATATTTGATGAACCAAAAGCCATTAACCAGTCTTCTTGCCTTTTTCTTGGAAAAAACTGGGAGCATGGAAGGATTTTCTCATTACAAGCCCAAATTAATCACAAGATGGACTTCATCAAACAGGAATTGCAAAATACTGCCGTCCCATTATTACTGGTAGGGCACTCTATTGGATCATACATATCCATGGAAATGTTTAGGACGTCTCCAGAACAGGTGACTTATTGTGTTGGGCTATATCCGTTTTTGGCGTTAAACCCAGAGTCCACAAAGCAGGCTCTTATTGGGAAGATTACAGAGTCCCGCATTGTATGTGTTGCCTTGAGCTTTATTGTTGCGCTCTTGGGATTGTTGCCTGTATCACTTTTGAGGTTAATTGTGCTCACATTCCTTGGGAAGTCATGGTCAGCTGCTGCAGTTGAGGCTGCCTGCTTTCACTTGGTAAAGTACCACACAATGCGGAATATTCTCTTTATGGCAATGACAGAATTCCAAAAGCTTTCAGAAACACCAGATTGGGCATTCATGAGGGAAAATCTGGACAAGATAGCATTTTTGTTCGGCATTGATGATCACTGGGCTCCACTGCAAATGTTTGAAGAGATTGCCAAGCAGGTCCCTGGTGTTGCTCTTTCAATTGAACGAGAGGGTCATACGACTCATGGTTTCTGTTGCACTGAAGCTGGCTCATTGTGGGTTGCTGAGCAGGTAGCAAGTTTGATCAAGATTAAAGTTTCATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LIDHydrolase

Protein Analysis

343

Amino Acids

38.58

Weight (kDa)

6.42

Isoelectric Point (pI)

36.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LIDHydrolase PF10230 42 - 320 6.6e-61 Lipid-droplet associated hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 174
AatII GACGTC 1 cut(s) 494
Acc36I ACCTGC 2 cut(s) 892, 985
AciI CCGC 2 cut(s) 592, 748
AclWI GGATC 2 cut(s) 12, 469
AcsI RAATTY 1 cut(s) 776
AcuI CTGAAG 2 cut(s) 114, 987
AcyI GRCGYC 1 cut(s) 491
AdeI CACNNNGTG 1 cut(s) 23
AfaI GTAC 1 cut(s) 737
AgsI TTSAA 4 cut(s) 110, 887, 924, 929
AjnI CCWGG 3 cut(s) 145, 154, 907
AluBI AGCT 6 cut(s) 113, 202, 615, 698, 787, 971
AluI AGCT 6 cut(s) 113, 202, 615, 698, 787, 971
Alw21I GWGCWC 1 cut(s) 672
Alw26I GTCTC 1 cut(s) 498
AlwI GGATC 2 cut(s) 12, 469
AlwNI CAGNNNCTG 1 cut(s) 701
ApeKI GCWGC 4 cut(s) 202, 698, 701, 713
ApoI RAATTY 1 cut(s) 776
AseI ATTAAT 1 cut(s) 384
AspLEI GCGC 1 cut(s) 628
AspS9I GGNCC 1 cut(s) 904
AsuHPI GGTGA 1 cut(s) 517
AvaII GGWCC 1 cut(s) 904
BaeGI GKGCMC 1 cut(s) 453
BanII GRGCYC 1 cut(s) 871
BbsI GAAGAC 1 cut(s) 312
Bbv12I GWGCWC 1 cut(s) 672
BbvI GCAGC 4 cut(s) 189, 685, 688, 700
BccI CCATC 1 cut(s) 388
BceAI ACGGC 1 cut(s) 413
BciT130I CCWGG 3 cut(s) 147, 156, 909
BclI TGATCA 2 cut(s) 859, 1008
BcoDI GTCTC 1 cut(s) 498
BfmI CTRYAG 1 cut(s) 702
BfuAI ACCTGC 2 cut(s) 892, 985
BisI GCNGC 4 cut(s) 203, 699, 702, 714
BlpI GCTNAGC 1 cut(s) 990
BlsI GCNGC 4 cut(s) 204, 700, 703, 715
Bme1390I CCNGG 3 cut(s) 147, 156, 909
Bme18I GGWCC 1 cut(s) 904
BmgT120I GGNCC 1 cut(s) 904
BmiI GGNNCC 2 cut(s) 870, 906
BmrFI CCNGG 3 cut(s) 147, 156, 909
BmrI ACTGGG 2 cut(s) 355, 874
BmuI ACTGGG 2 cut(s) 355, 874
BpiI GAAGAC 1 cut(s) 312
BpmI CTGGAG 1 cut(s) 480
Bpu1102I GCTNAGC 1 cut(s) 990
BpuEI CTTGAG 1 cut(s) 631
BsaHI GRCGYC 1 cut(s) 491
BsaJI CCNNGG 4 cut(s) 145, 474, 679, 907
Bse1I ACTGG 4 cut(s) 316, 350, 447, 869
Bse3DI GCAATG 1 cut(s) 774
BseBI CCWGG 3 cut(s) 147, 156, 909
BseDI CCNNGG 4 cut(s) 145, 474, 679, 907
BseGI GGATG 1 cut(s) 141
BseMI GCAATG 1 cut(s) 774
BseMII CTCAG 1 cut(s) 981
BseNI ACTGG 4 cut(s) 316, 350, 447, 869
BseSI GKGCMC 1 cut(s) 453
BseXI GCAGC 4 cut(s) 189, 685, 688, 700
BseYI CCCAGC 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 672
BslFI GGGAC 3 cut(s) 416, 574, 890
BsmAI GTCTC 1 cut(s) 498
BsmBI CGTCTC 1 cut(s) 498
BsmFI GGGAC 3 cut(s) 416, 574, 890
BsmI GAATGC 1 cut(s) 809
Bsp1286I GDGCHC 3 cut(s) 453, 672, 871
Bsp143I GATC 4 cut(s) 4, 461, 859, 1008
Bsp1720I GCTNAGC 1 cut(s) 990
Bsp19I CCATGG 1 cut(s) 474
BspACI CCGC 2 cut(s) 592, 748
BspCNI CTCAG 1 cut(s) 982
BspHI TCATGA 1 cut(s) 813
BspLI GGNNCC 2 cut(s) 870, 906
BspMAI CTGCAG 1 cut(s) 706
BspMI ACCTGC 2 cut(s) 892, 985
BspPI GGATC 2 cut(s) 12, 469
BsrDI GCAATG 1 cut(s) 774
BsrI ACTGG 4 cut(s) 316, 350, 447, 869
BssECI CCNNGG 4 cut(s) 145, 474, 679, 907
BssMI GATC 4 cut(s) 4, 461, 859, 1008
BssNI GRCGYC 1 cut(s) 491
BssT1I CCWWGG 2 cut(s) 474, 679
Bst2UI CCWGG 3 cut(s) 147, 156, 909
Bst6I CTCTTC 1 cut(s) 882
BstACI GRCGYC 1 cut(s) 491
BstC8I GCNNGC 3 cut(s) 564, 718, 973
BstDEI CTNAG 1 cut(s) 990
BstDSI CCRYGG 1 cut(s) 474
BstF5I GGATG 1 cut(s) 141
BstHHI GCGC 1 cut(s) 628
BstKTI GATC 4 cut(s) 7, 464, 862, 1011
BstMAI GTCTC 1 cut(s) 498
BstMBI GATC 4 cut(s) 4, 461, 859, 1008
BstMWI GCNNNNNNNGC 1 cut(s) 710
BstNI CCWGG 3 cut(s) 147, 156, 909
BstSCI CCNGG 3 cut(s) 145, 154, 907
BstSFI CTRYAG 1 cut(s) 702
BstSLI GKGCMC 1 cut(s) 453
BstV1I GCAGC 4 cut(s) 189, 685, 688, 700
BstV2I GAAGAC 1 cut(s) 312
BtgI CCRYGG 1 cut(s) 474
BtgZI GCGATG 1 cut(s) 87
BtsCI GGATG 1 cut(s) 141
BtsI GCAGTG 1 cut(s) 872
BtsIMutI CAGTG 3 cut(s) 862, 872, 963
BveI ACCTGC 2 cut(s) 892, 985
Cac8I GCNNGC 3 cut(s) 564, 718, 973
CaiI CAGNNNCTG 1 cut(s) 701
CciI TCATGA 1 cut(s) 813
CfoI GCGC 1 cut(s) 628
Cfr13I GGNCC 1 cut(s) 904
CseI GACGC 1 cut(s) 207
Csp6I GTAC 1 cut(s) 736
CviAII CATG 6 cut(s) 131, 353, 475, 690, 814, 950
CviQI GTAC 1 cut(s) 736
DdeI CTNAG 1 cut(s) 990
DpnI GATC 4 cut(s) 6, 463, 861, 1010
DpnII GATC 4 cut(s) 4, 461, 859, 1008
DraIII CACNNNGTG 1 cut(s) 23
Eam1104I CTCTTC 1 cut(s) 882
EarI CTCTTC 1 cut(s) 882
Eco130I CCWWGG 2 cut(s) 474, 679
Eco24I GRGCYC 1 cut(s) 871
Eco47I GGWCC 1 cut(s) 904
Eco57I CTGAAG 2 cut(s) 114, 987
EcoO109I RGGNCCY 1 cut(s) 904
EcoRI GAATTC 1 cut(s) 776
EcoRII CCWGG 3 cut(s) 145, 154, 907
EcoT14I CCWWGG 2 cut(s) 474, 679
EcoT38I GRGCYC 1 cut(s) 871
ErhI CCWWGG 2 cut(s) 474, 679
Esp3I CGTCTC 1 cut(s) 498
FaeI CATG 6 cut(s) 134, 356, 478, 693, 817, 953
FalI AAGNNNNNCTT 2 cut(s) 383, 415
FaqI GGGAC 3 cut(s) 416, 574, 890
FatI CATG 6 cut(s) 130, 352, 474, 689, 813, 949
FauI CCCGC 1 cut(s) 599
FbaI TGATCA 2 cut(s) 859, 1008
Fnu4HI GCNGC 4 cut(s) 203, 699, 702, 714
FokI GGATG 1 cut(s) 128
FriOI GRGCYC 1 cut(s) 871
Fsp4HI GCNGC 4 cut(s) 203, 699, 702, 714
GlaI GCGC 1 cut(s) 627
GluI GCNGC 4 cut(s) 203, 699, 702, 714
GsaI CCCAGC 1 cut(s) 209
GsuI CTGGAG 1 cut(s) 480
HgaI GACGC 1 cut(s) 207
HhaI GCGC 1 cut(s) 628
Hin1I GRCGYC 1 cut(s) 491
Hin1II CATG 6 cut(s) 134, 356, 478, 693, 817, 953
Hin6I GCGC 1 cut(s) 626
HinP1I GCGC 1 cut(s) 626
HindIII AAGCTT 1 cut(s) 785
HinfI GANTC 4 cut(s) 106, 551, 587, 946
HphI GGTGA 1 cut(s) 517
Hpy166II GTNNAC 1 cut(s) 555
Hpy188I TCNGA 1 cut(s) 793
Hpy188III TCNNGA 5 cut(s) 8, 497, 814, 827, 1012
Hpy8I GTNNAC 1 cut(s) 555
HpyAV CCTTC 1 cut(s) 351
HpyCH4IV ACGT 2 cut(s) 22, 491
HpyCH4V TGCA 5 cut(s) 276, 418, 704, 877, 963
HpyF10VI GCNNNNNNNGC 1 cut(s) 710
HpyF3I CTNAG 1 cut(s) 990
HpySE526I ACGT 2 cut(s) 22, 491
Hsp92I GRCGYC 1 cut(s) 491
Hsp92II CATG 6 cut(s) 134, 356, 478, 693, 817, 953
HspAI GCGC 1 cut(s) 626
Ksp22I TGATCA 2 cut(s) 859, 1008
Kzo9I GATC 4 cut(s) 4, 461, 859, 1008
LmnI GCTCC 2 cut(s) 349, 874
Lsp1109I GCAGC 4 cut(s) 189, 685, 688, 700
MaeII ACGT 2 cut(s) 22, 491
MaeIII GTNAC 4 cut(s) 83, 163, 223, 505
MalI GATC 4 cut(s) 6, 463, 861, 1010
MboI GATC 4 cut(s) 4, 461, 859, 1008
MboII GAAGA 4 cut(s) 58, 312, 589, 899
MfeI CAATTG 1 cut(s) 924
MhlI GDGCHC 3 cut(s) 453, 672, 871
MluCI AATT 5 cut(s) 381, 413, 663, 776, 924
MlyI GAGTC 3 cut(s) 560, 596, 940
MmeI TCCRAC 1 cut(s) 146
MnlI CCTC 5 cut(s) 181, 651, 703, 810, 928
MseI TTAA 5 cut(s) 312, 384, 542, 662, 1017
MslI CAYNNNNRTG 2 cut(s) 473, 479
MspA1I CMGCKG 1 cut(s) 698
MspR9I CCNGG 3 cut(s) 147, 156, 909
MunI CAATTG 1 cut(s) 924
Mva1269I GAATGC 1 cut(s) 809
MvaI CCWGG 3 cut(s) 147, 156, 909
MwoI GCNNNNNNNGC 1 cut(s) 710
NcoI CCATGG 1 cut(s) 474
NdeII GATC 4 cut(s) 4, 461, 859, 1008
NlaIII CATG 6 cut(s) 134, 356, 478, 693, 817, 953
NlaIV GGNNCC 2 cut(s) 870, 906
NmuCI GTSAC 3 cut(s) 83, 223, 505
PagI TCATGA 1 cut(s) 813
PctI GAATGC 1 cut(s) 809
PfeI GAWTC 1 cut(s) 106
PkrI GCNGC 4 cut(s) 204, 700, 703, 715
PleI GAGTC 3 cut(s) 559, 595, 940
PpsI GAGTC 3 cut(s) 559, 595, 940
PpuMI RGGWCCY 1 cut(s) 904
PshBI ATTAAT 1 cut(s) 384
PsiI TTATAA 1 cut(s) 174
Psp5II RGGWCCY 1 cut(s) 904
Psp6I CCWGG 3 cut(s) 145, 154, 907
PspFI CCCAGC 1 cut(s) 205
PspGI CCWGG 3 cut(s) 145, 154, 907
PspN4I GGNNCC 2 cut(s) 870, 906
PspPI GGNCC 1 cut(s) 904
PspPPI RGGWCCY 1 cut(s) 904
PstI CTGCAG 1 cut(s) 706
PstNI CAGNNNCTG 1 cut(s) 701
PvuII CAGCTG 1 cut(s) 698
RsaI GTAC 1 cut(s) 737
RsaNI GTAC 1 cut(s) 736
RseI CAYNNNNRTG 2 cut(s) 473, 479
SaqAI TTAA 5 cut(s) 312, 384, 542, 662, 1017
SatI GCNGC 4 cut(s) 203, 699, 702, 714
Sau3AI GATC 4 cut(s) 4, 461, 859, 1008
Sau96I GGNCC 1 cut(s) 904
SchI GAGTC 3 cut(s) 560, 596, 940
ScrFI CCNGG 3 cut(s) 147, 156, 909
SduI GDGCHC 3 cut(s) 453, 672, 871
SfcI CTRYAG 1 cut(s) 702
SinI GGWCC 1 cut(s) 904
SmiMI CAYNNNNRTG 2 cut(s) 473, 479
SmlI CTYRAG 1 cut(s) 610
SmoI CTYRAG 1 cut(s) 610
Sse9I AATT 5 cut(s) 381, 413, 663, 776, 924
SsiI CCGC 2 cut(s) 592, 748
SspI AATATT 1 cut(s) 754
StyD4I CCNGG 3 cut(s) 145, 154, 907
StyI CCWWGG 2 cut(s) 474, 679
TaiI ACGT 2 cut(s) 25, 494
TaqI TCGA 1 cut(s) 40
TasI AATT 5 cut(s) 381, 413, 663, 776, 924
TfiI GAWTC 1 cut(s) 106
Tru1I TTAA 5 cut(s) 312, 384, 542, 662, 1017
Tru9I TTAA 5 cut(s) 312, 384, 542, 662, 1017
TscAI CASTG 3 cut(s) 869, 879, 970
TseFI GTSAC 3 cut(s) 83, 223, 505
TseI GCWGC 4 cut(s) 202, 698, 701, 713
Tsp45I GTSAC 3 cut(s) 83, 223, 505
TspDTI ATGAA 5 cut(s) 119, 312, 391, 802, 1014
TspGWI ACGGA 1 cut(s) 519
TspRI CASTG 3 cut(s) 869, 879, 970
VpaK11BI GGWCC 1 cut(s) 904
VspI ATTAAT 1 cut(s) 384
XapI RAATTY 1 cut(s) 776
ZraI GACGTC 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.