Rh3AG198000

UPF0554 protein C2orf43 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0002532
Physical Location & Seq
Reverse (-)
19402226 .. 19408056
5831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG198000.1

Sequence Viewer

Length: 948 bp
ATGGATCAGGACATTTCACAACGTGAAAACCAAGTGCTTCGAGTGAAGAAGCGTGTCGCATTTCGTTTATGCGATGTGTCGAGTCACACTACTGAAGTAATGGAGATTCAAGCTGACAATCCAACATTTCATGTTCTAATCATCCCTGGAAATCCAGGTGTTGTTACATTTTATAAAGACTTTGTGGAGGCTCTATATGAGCTGCTGGGTGGAAATGCGTCTGTGACAGTTGTTGGGCATATATCACACACCAAAAAGAACTGGGAGCATGGAAGGATTTTCTCATTACAAGCCCAAATTAATCACAAGATGGACTTCATCAAACAGGAATTGCAAAATACTGCAGGCCCTTTATTACTGGTAGGGCACTCTATTGGATCATATATATCCATGGAAATGTTTAGGAGGTCTCCAGAACAGGTGACTTATTGTGTTGGGCTATATCCGTTTTTGGCGTTAAACCCAGAGTCCACAAAACAGGCCCTTATTGGGAAGATTACAGAGTCCCGCATTGTATGTGTTGCCTTGAGCTTTATTGTTGCGCTCTTGGGATTGTTGCCTATATCACTTTTGAGGTTAATTGTGCTCACATTCCTTGGGAAGTCATGGTCAGCTGCTGCAGTTGAGGCTGCTTGCTATCACTTGGTAAAGTACCACACAATGCGGAATATTCTCTTTATGGCAATGACAGAATTCCAAAAGCTTTCAGAAACACCAGATTGGGAATTCATGAGGGAAAATCTGGACAAGATAGCATTTTTGTTCGGCATTGATGATCACTGGGCTCCACTGCAAATGTTTGAAGAGATTGCCGAGCAGGTCCCTGGTGTTGCTCTTTCAATTGAACGAGAGGGTCATACTACTCATGGTTTCTGTTGCACTGAAGCTGGCTCATTGTGGGTTGCTGAGCAGGTAGCAAGCTTGATCAAGATTAAAGTTTCATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LIDHydrolase

Protein Analysis

315

Amino Acids

35.44

Weight (kDa)

6.06

Isoelectric Point (pI)

37.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LIDHydrolase PF10230 42 - 292 2.8e-68 Lipid-droplet associated hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 174
Acc36I ACCTGC 2 cut(s) 808, 901
AciI CCGC 2 cut(s) 508, 664
AclWI GGATC 2 cut(s) 12, 385
AcsI RAATTY 2 cut(s) 692, 725
AcuI CTGAAG 2 cut(s) 114, 903
AdeI CACNNNGTG 1 cut(s) 23
AfaI GTAC 1 cut(s) 653
AfiI CCNNNNNNNGG 1 cut(s) 489
AgsI TTSAA 4 cut(s) 110, 803, 840, 845
AjnI CCWGG 3 cut(s) 145, 154, 823
AluBI AGCT 7 cut(s) 113, 202, 531, 614, 703, 887, 921
AluI AGCT 7 cut(s) 113, 202, 531, 614, 703, 887, 921
Alw21I GWGCWC 1 cut(s) 588
Alw26I GTCTC 1 cut(s) 414
AlwI GGATC 2 cut(s) 12, 385
AlwNI CAGNNNCTG 1 cut(s) 617
AoxI GGCC 2 cut(s) 346, 480
ApeKI GCWGC 4 cut(s) 202, 614, 617, 629
ApoI RAATTY 2 cut(s) 692, 725
AseI ATTAAT 1 cut(s) 300
AspLEI GCGC 1 cut(s) 544
AspS9I GGNCC 3 cut(s) 347, 481, 820
AsuHPI GGTGA 1 cut(s) 433
AvaII GGWCC 1 cut(s) 820
BaeGI GKGCMC 1 cut(s) 369
BanII GRGCYC 1 cut(s) 787
Bbv12I GWGCWC 1 cut(s) 588
BbvI GCAGC 4 cut(s) 189, 601, 604, 616
BccI CCATC 1 cut(s) 304
BciT130I CCWGG 3 cut(s) 147, 156, 825
BclI TGATCA 2 cut(s) 775, 924
BcoDI GTCTC 1 cut(s) 414
BfmI CTRYAG 2 cut(s) 342, 618
BfuAI ACCTGC 2 cut(s) 808, 901
BisI GCNGC 4 cut(s) 203, 615, 618, 630
BlpI GCTNAGC 1 cut(s) 906
BlsI GCNGC 4 cut(s) 204, 616, 619, 631
Bme1390I CCNGG 3 cut(s) 147, 156, 825
Bme18I GGWCC 1 cut(s) 820
BmgT120I GGNCC 3 cut(s) 347, 481, 820
BmiI GGNNCC 2 cut(s) 786, 822
BmrFI CCNGG 3 cut(s) 147, 156, 825
BmrI ACTGGG 2 cut(s) 271, 790
BmuI ACTGGG 2 cut(s) 271, 790
BpmI CTGGAG 1 cut(s) 396
Bpu1102I GCTNAGC 1 cut(s) 906
BpuEI CTTGAG 1 cut(s) 547
BsaI GGTCTC 1 cut(s) 414
BsaJI CCNNGG 4 cut(s) 145, 390, 595, 823
Bsc4I CCNNNNNNNGG 1 cut(s) 489
Bse1I ACTGG 3 cut(s) 266, 363, 785
Bse3DI GCAATG 1 cut(s) 690
BseBI CCWGG 3 cut(s) 147, 156, 825
BseDI CCNNGG 4 cut(s) 145, 390, 595, 823
BseGI GGATG 1 cut(s) 141
BseLI CCNNNNNNNGG 1 cut(s) 489
BseMI GCAATG 1 cut(s) 690
BseMII CTCAG 1 cut(s) 897
BseNI ACTGG 3 cut(s) 266, 363, 785
BseSI GKGCMC 1 cut(s) 369
BseXI GCAGC 4 cut(s) 189, 601, 604, 616
BseYI CCCAGC 1 cut(s) 205
BshFI GGCC 2 cut(s) 348, 482
BsiHKAI GWGCWC 1 cut(s) 588
BslFI GGGAC 2 cut(s) 490, 806
BslI CCNNNNNNNGG 1 cut(s) 489
BsmAI GTCTC 1 cut(s) 414
BsmFI GGGAC 2 cut(s) 490, 806
BsnI GGCC 2 cut(s) 348, 482
Bso31I GGTCTC 1 cut(s) 414
Bsp1286I GDGCHC 3 cut(s) 369, 588, 787
Bsp143I GATC 4 cut(s) 4, 377, 775, 924
Bsp1720I GCTNAGC 1 cut(s) 906
Bsp19I CCATGG 1 cut(s) 390
BspACI CCGC 2 cut(s) 508, 664
BspANI GGCC 2 cut(s) 348, 482
BspCNI CTCAG 1 cut(s) 898
BspHI TCATGA 1 cut(s) 729
BspLI GGNNCC 2 cut(s) 786, 822
BspMAI CTGCAG 2 cut(s) 346, 622
BspMI ACCTGC 2 cut(s) 808, 901
BspPI GGATC 2 cut(s) 12, 385
BspTNI GGTCTC 1 cut(s) 414
BsrDI GCAATG 1 cut(s) 690
BsrI ACTGG 3 cut(s) 266, 363, 785
BssECI CCNNGG 4 cut(s) 145, 390, 595, 823
BssMI GATC 4 cut(s) 4, 377, 775, 924
BssT1I CCWWGG 2 cut(s) 390, 595
Bst2UI CCWGG 3 cut(s) 147, 156, 825
Bst4CI ACNGT 1 cut(s) 229
Bst6I CTCTTC 1 cut(s) 798
BstC8I GCNNGC 4 cut(s) 346, 634, 889, 919
BstDEI CTNAG 1 cut(s) 906
BstDSI CCRYGG 1 cut(s) 390
BstF5I GGATG 1 cut(s) 141
BstHHI GCGC 1 cut(s) 544
BstKTI GATC 4 cut(s) 7, 380, 778, 927
BstMAI GTCTC 1 cut(s) 414
BstMBI GATC 4 cut(s) 4, 377, 775, 924
BstMWI GCNNNNNNNGC 1 cut(s) 626
BstNI CCWGG 3 cut(s) 147, 156, 825
BstSCI CCNGG 3 cut(s) 145, 154, 823
BstSFI CTRYAG 2 cut(s) 342, 618
BstSLI GKGCMC 1 cut(s) 369
BstV1I GCAGC 4 cut(s) 189, 601, 604, 616
BsuRI GGCC 2 cut(s) 348, 482
BtgI CCRYGG 1 cut(s) 390
BtgZI GCGATG 1 cut(s) 87
BtsCI GGATG 1 cut(s) 141
BtsI GCAGTG 1 cut(s) 788
BtsIMutI CAGTG 3 cut(s) 778, 788, 879
BveI ACCTGC 2 cut(s) 808, 901
Cac8I GCNNGC 4 cut(s) 346, 634, 889, 919
CaiI CAGNNNCTG 1 cut(s) 617
CciI TCATGA 1 cut(s) 729
CfoI GCGC 1 cut(s) 544
Cfr13I GGNCC 3 cut(s) 347, 481, 820
CseI GACGC 1 cut(s) 207
Csp6I GTAC 1 cut(s) 652
CviAII CATG 6 cut(s) 131, 269, 391, 606, 730, 866
CviQI GTAC 1 cut(s) 652
DdeI CTNAG 1 cut(s) 906
DpnI GATC 4 cut(s) 6, 379, 777, 926
DpnII GATC 4 cut(s) 4, 377, 775, 924
DraIII CACNNNGTG 1 cut(s) 23
Eam1104I CTCTTC 1 cut(s) 798
EarI CTCTTC 1 cut(s) 798
Eco130I CCWWGG 2 cut(s) 390, 595
Eco24I GRGCYC 1 cut(s) 787
Eco31I GGTCTC 1 cut(s) 414
Eco47I GGWCC 1 cut(s) 820
Eco57I CTGAAG 2 cut(s) 114, 903
EcoO109I RGGNCCY 3 cut(s) 347, 481, 820
EcoRI GAATTC 2 cut(s) 692, 725
EcoRII CCWGG 3 cut(s) 145, 154, 823
EcoT14I CCWWGG 2 cut(s) 390, 595
EcoT38I GRGCYC 1 cut(s) 787
ErhI CCWWGG 2 cut(s) 390, 595
FaeI CATG 6 cut(s) 134, 272, 394, 609, 733, 869
FalI AAGNNNNNCTT 2 cut(s) 299, 331
FaqI GGGAC 2 cut(s) 490, 806
FatI CATG 6 cut(s) 130, 268, 390, 605, 729, 865
FauI CCCGC 1 cut(s) 515
FbaI TGATCA 2 cut(s) 775, 924
Fnu4HI GCNGC 4 cut(s) 203, 615, 618, 630
FokI GGATG 1 cut(s) 128
FriOI GRGCYC 1 cut(s) 787
Fsp4HI GCNGC 4 cut(s) 203, 615, 618, 630
GlaI GCGC 1 cut(s) 543
GluI GCNGC 4 cut(s) 203, 615, 618, 630
GsaI CCCAGC 1 cut(s) 209
GsuI CTGGAG 1 cut(s) 396
HaeIII GGCC 2 cut(s) 348, 482
HgaI GACGC 1 cut(s) 207
HhaI GCGC 1 cut(s) 544
Hin1II CATG 6 cut(s) 134, 272, 394, 609, 733, 869
Hin6I GCGC 1 cut(s) 542
HinP1I GCGC 1 cut(s) 542
HindIII AAGCTT 2 cut(s) 701, 919
HinfI GANTC 4 cut(s) 82, 106, 467, 503
HphI GGTGA 1 cut(s) 433
Hpy166II GTNNAC 1 cut(s) 471
Hpy188I TCNGA 1 cut(s) 709
Hpy188III TCNNGA 5 cut(s) 8, 413, 730, 743, 928
Hpy8I GTNNAC 1 cut(s) 471
HpyAV CCTTC 1 cut(s) 267
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4IV ACGT 1 cut(s) 22
HpyCH4V TGCA 5 cut(s) 334, 344, 620, 793, 879
HpyF10VI GCNNNNNNNGC 1 cut(s) 626
HpyF3I CTNAG 1 cut(s) 906
HpySE526I ACGT 1 cut(s) 22
Hsp92II CATG 6 cut(s) 134, 272, 394, 609, 733, 869
HspAI GCGC 1 cut(s) 542
Ksp22I TGATCA 2 cut(s) 775, 924
Kzo9I GATC 4 cut(s) 4, 377, 775, 924
LmnI GCTCC 2 cut(s) 265, 790
Lsp1109I GCAGC 4 cut(s) 189, 601, 604, 616
MaeII ACGT 1 cut(s) 22
MaeIII GTNAC 4 cut(s) 83, 163, 223, 421
MalI GATC 4 cut(s) 6, 379, 777, 926
MboI GATC 4 cut(s) 4, 377, 775, 924
MboII GAAGA 3 cut(s) 58, 505, 815
MfeI CAATTG 1 cut(s) 840
MhlI GDGCHC 3 cut(s) 369, 588, 787
MluCI AATT 6 cut(s) 297, 329, 579, 692, 725, 840
MlyI GAGTC 3 cut(s) 91, 476, 512
MmeI TCCRAC 1 cut(s) 146
MnlI CCTC 6 cut(s) 181, 399, 567, 619, 726, 844
MseI TTAA 4 cut(s) 300, 458, 578, 933
MslI CAYNNNNRTG 1 cut(s) 395
MspA1I CMGCKG 1 cut(s) 614
MspR9I CCNGG 3 cut(s) 147, 156, 825
MunI CAATTG 1 cut(s) 840
MvaI CCWGG 3 cut(s) 147, 156, 825
MwoI GCNNNNNNNGC 1 cut(s) 626
NcoI CCATGG 1 cut(s) 390
NdeII GATC 4 cut(s) 4, 377, 775, 924
NlaIII CATG 6 cut(s) 134, 272, 394, 609, 733, 869
NlaIV GGNNCC 2 cut(s) 786, 822
NmeAIII GCCGAG 1 cut(s) 838
NmuCI GTSAC 3 cut(s) 83, 223, 421
PagI TCATGA 1 cut(s) 729
PfeI GAWTC 1 cut(s) 106
PkrI GCNGC 4 cut(s) 204, 616, 619, 631
PleI GAGTC 3 cut(s) 90, 475, 511
PpsI GAGTC 3 cut(s) 90, 475, 511
PpuMI RGGWCCY 1 cut(s) 820
PshBI ATTAAT 1 cut(s) 300
PsiI TTATAA 1 cut(s) 174
Psp5II RGGWCCY 1 cut(s) 820
Psp6I CCWGG 3 cut(s) 145, 154, 823
PspFI CCCAGC 1 cut(s) 205
PspGI CCWGG 3 cut(s) 145, 154, 823
PspN4I GGNNCC 2 cut(s) 786, 822
PspPI GGNCC 3 cut(s) 347, 481, 820
PspPPI RGGWCCY 1 cut(s) 820
PstI CTGCAG 2 cut(s) 346, 622
PstNI CAGNNNCTG 1 cut(s) 617
PvuII CAGCTG 1 cut(s) 614
RsaI GTAC 1 cut(s) 653
RsaNI GTAC 1 cut(s) 652
RseI CAYNNNNRTG 1 cut(s) 395
SaqAI TTAA 4 cut(s) 300, 458, 578, 933
SatI GCNGC 4 cut(s) 203, 615, 618, 630
Sau3AI GATC 4 cut(s) 4, 377, 775, 924
Sau96I GGNCC 3 cut(s) 347, 481, 820
SchI GAGTC 3 cut(s) 91, 476, 512
ScrFI CCNGG 3 cut(s) 147, 156, 825
SduI GDGCHC 3 cut(s) 369, 588, 787
SfcI CTRYAG 2 cut(s) 342, 618
SinI GGWCC 1 cut(s) 820
SmiMI CAYNNNNRTG 1 cut(s) 395
SmlI CTYRAG 1 cut(s) 526
SmoI CTYRAG 1 cut(s) 526
Sse9I AATT 6 cut(s) 297, 329, 579, 692, 725, 840
SsiI CCGC 2 cut(s) 508, 664
SspI AATATT 1 cut(s) 670
StyD4I CCNGG 3 cut(s) 145, 154, 823
StyI CCWWGG 2 cut(s) 390, 595
TaaI ACNGT 1 cut(s) 229
TaiI ACGT 1 cut(s) 25
TaqI TCGA 2 cut(s) 40, 80
TasI AATT 6 cut(s) 297, 329, 579, 692, 725, 840
TfiI GAWTC 1 cut(s) 106
Tru1I TTAA 4 cut(s) 300, 458, 578, 933
Tru9I TTAA 4 cut(s) 300, 458, 578, 933
TscAI CASTG 3 cut(s) 785, 795, 886
TseFI GTSAC 3 cut(s) 83, 223, 421
TseI GCWGC 4 cut(s) 202, 614, 617, 629
Tsp45I GTSAC 3 cut(s) 83, 223, 421
TspDTI ATGAA 4 cut(s) 119, 307, 718, 930
TspGWI ACGGA 1 cut(s) 435
TspRI CASTG 3 cut(s) 785, 795, 886
VpaK11BI GGWCC 1 cut(s) 820
VspI ATTAAT 1 cut(s) 300
XapI RAATTY 2 cut(s) 692, 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.