Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000140.1

Orthogroup ID

OG0002532

Physical Location & Seq

Genomic Coordinates Reverse (-)

37486 .. 43420

Gene Structure 5935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000140.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

atgcaccattcaacgcctccgcgttcctcaaccaccattgttgatcctcgtattcgtataaggcccaggttctctagcttttattgtcggagcagagaaatggatcagggcatttcacaacgtgaaaaccaagtgcttcgagtgaagaagcgtgtcgcatttcgtttatgcgatgtgtcgagtcacactactgaagtaatggagattcaagctgacaatccaacatttcatgttctaatcatccctggaaatccaggtgttgttacattttataaagactttgtggaggctctatatgagctgctgggtggaactgcgtctgtgacagttgttgggcatatatcacacaccaaaaagaactgggagcatggaaggattttctcattacaagcccaaattaatcacaagatggacttcatcaaacaggaattgcaaaatactgcaggccctttattactggtagggcactctattggatcatacatatccatggaaatgtttaggaggtctccagaacaggtgacttattgtgttgggctatatccgtttatggcgttaaacccagagtccacaaagcaggctcttattggaaagattacagagtcccgcattgtatgtgttgccttgagctttattgttgcgctcttgggattgttgcctatatcacttttgaggttaattgtgctcacattccttgggaagtcatggtcagctgctgcagttgaggctgcttgctctcacttggtaaagtaccacacaatgcggaatattctctttatggcaatgacagaattccaaaagctttcagaaacaccagattgggcattcatgagggaaaatctggacaagatagcatttttgttcggcattgatgatcactgggctccactgcaaatgtttgaagagattgccgagcaggtccctggtgttgctctttcaattgaacgagagggtcatgctactcatggtttctgttgcactgaagctggctcattgtgggttgctgagcaggtagcaagcttgatcaagattaaagtttcattgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIDHydrolase

Protein Analysis

348

Amino Acids

39.18

Weight (kDa)

7.7

Isoelectric Point (pI)

40.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002532)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11620 AT3G11620 AT3G11620 AT3G11620 AT3G11620 AT3G11620 AT3G11620 AT3G11620 AT3G11620
fragaria_vesca	FvH4_6g19910 FvH4_6g19910 FvH4_6g19910 FvH4_6g19910 FvH4_6g19910 FvH4_6g19910 FvH4_6g19910 FvH4_6g19910 FvH4_6g19910 FvH4_6g19910 FvH4_6g19910 FvH4_6g19910 FvH4_6g19910
malus_domestica	MD12G1034600.v1.1 MD14G1035800.v1.1
prunus_persica	Prupe.7G098300_v2.0.a1 Prupe.7G098300_v2.0.a1
pyrus_communis	pycom12g03190
rosa_chinensis	RchiOBHm_Chr3g0475311 RchiOBHm_Chr3g0475321
rosa_laevigata	RLG00000023852
rosa_multiflora	Rmu_ssc0000140.1_g000007
rosa_roxburghii	Rroxscaffold_6G00406390
rosa_rugosa	Rorug03G0147900 Rorug03G0148000 Rorug03G0148000 Rorug03G0148100 Rorug03G0148200
rosa_samantha	Rh3AG198000 Rh3BG228200 Rh3DG223400
rosa_wichuraiana	Rw3G017990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	273
Acc36I	ACCTGC	2 cut(s)	907, 1000
AccII	CGCG	1 cut(s)	22
AciI	CCGC	3 cut(s)	20, 607, 763
AclWI	GGATC	3 cut(s)	38, 111, 484
AcsI	RAATTY	1 cut(s)	791
AcuI	CTGAAG	2 cut(s)	213, 1002
AdeI	CACNNNGTG	1 cut(s)	122
AfaI	GTAC	1 cut(s)	752
AgsI	TTSAA	5 cut(s)	12, 209, 902, 939, 944
AjnI	CCWGG	4 cut(s)	65, 244, 253, 922
AluBI	AGCT	8 cut(s)	78, 212, 301, 630, 713, 802, 986, 1020
AluI	AGCT	8 cut(s)	78, 212, 301, 630, 713, 802, 986, 1020
Alw21I	GWGCWC	1 cut(s)	687
Alw26I	GTCTC	1 cut(s)	513
AlwI	GGATC	3 cut(s)	38, 111, 484
AlwNI	CAGNNNCTG	1 cut(s)	716
AoxI	GGCC	2 cut(s)	62, 445
ApeKI	GCWGC	4 cut(s)	301, 713, 716, 728
ApoI	RAATTY	1 cut(s)	791
AseI	ATTAAT	1 cut(s)	399
AspLEI	GCGC	1 cut(s)	643
AspS9I	GGNCC	3 cut(s)	63, 446, 919
AsuHPI	GGTGA	1 cut(s)	532
AvaII	GGWCC	1 cut(s)	919
BaeGI	GKGCMC	1 cut(s)	468
BanII	GRGCYC	1 cut(s)	886
Bbv12I	GWGCWC	1 cut(s)	687
BbvI	GCAGC	4 cut(s)	288, 700, 703, 715
BccI	CCATC	1 cut(s)	403
BciT130I	CCWGG	4 cut(s)	67, 246, 255, 924
BclI	TGATCA	2 cut(s)	874, 1023
BcoDI	GTCTC	1 cut(s)	513
BfaI	CTAG	1 cut(s)	75
BfmI	CTRYAG	2 cut(s)	441, 717
BfuAI	ACCTGC	2 cut(s)	907, 1000
BisI	GCNGC	4 cut(s)	302, 714, 717, 729
BlpI	GCTNAGC	1 cut(s)	1005
BlsI	GCNGC	4 cut(s)	303, 715, 718, 730
Bme1390I	CCNGG	4 cut(s)	67, 246, 255, 924
Bme18I	GGWCC	1 cut(s)	919
BmgT120I	GGNCC	3 cut(s)	63, 446, 919
BmiI	GGNNCC	2 cut(s)	885, 921
BmrFI	CCNGG	4 cut(s)	67, 246, 255, 924
BmrI	ACTGGG	2 cut(s)	370, 889
BmuI	ACTGGG	2 cut(s)	370, 889
BpmI	CTGGAG	1 cut(s)	495
Bpu1102I	GCTNAGC	1 cut(s)	1005
BpuEI	CTTGAG	1 cut(s)	646
BsaI	GGTCTC	1 cut(s)	513
BsaJI	CCNNGG	5 cut(s)	65, 244, 489, 694, 922
Bse1I	ACTGG	3 cut(s)	365, 462, 884
Bse3DI	GCAATG	1 cut(s)	789
BseBI	CCWGG	4 cut(s)	67, 246, 255, 924
BseDI	CCNNGG	5 cut(s)	65, 244, 489, 694, 922
BseGI	GGATG	1 cut(s)	240
BseMI	GCAATG	1 cut(s)	789
BseMII	CTCAG	1 cut(s)	996
BseNI	ACTGG	3 cut(s)	365, 462, 884
BseSI	GKGCMC	1 cut(s)	468
BseXI	GCAGC	4 cut(s)	288, 700, 703, 715
BseYI	CCCAGC	1 cut(s)	304
Bsh1236I	CGCG	1 cut(s)	22
BshFI	GGCC	2 cut(s)	64, 447
BsiHKAI	GWGCWC	1 cut(s)	687
BslFI	GGGAC	2 cut(s)	589, 905
BsmAI	GTCTC	1 cut(s)	513
BsmFI	GGGAC	2 cut(s)	589, 905
BsmI	GAATGC	1 cut(s)	824
BsnI	GGCC	2 cut(s)	64, 447
Bso31I	GGTCTC	1 cut(s)	513
Bsp1286I	GDGCHC	3 cut(s)	468, 687, 886
Bsp143I	GATC	5 cut(s)	43, 103, 476, 874, 1023
Bsp1720I	GCTNAGC	1 cut(s)	1005
Bsp19I	CCATGG	1 cut(s)	489
BspACI	CCGC	3 cut(s)	20, 607, 763
BspANI	GGCC	2 cut(s)	64, 447
BspCNI	CTCAG	1 cut(s)	997
BspFNI	CGCG	1 cut(s)	22
BspHI	TCATGA	1 cut(s)	828
BspLI	GGNNCC	2 cut(s)	885, 921
BspMAI	CTGCAG	2 cut(s)	445, 721
BspMI	ACCTGC	2 cut(s)	907, 1000
BspPI	GGATC	3 cut(s)	38, 111, 484
BspTNI	GGTCTC	1 cut(s)	513
BsrDI	GCAATG	1 cut(s)	789
BsrI	ACTGG	3 cut(s)	365, 462, 884
BssECI	CCNNGG	5 cut(s)	65, 244, 489, 694, 922
BssMI	GATC	5 cut(s)	43, 103, 476, 874, 1023
BssT1I	CCWWGG	2 cut(s)	489, 694
Bst2UI	CCWGG	4 cut(s)	67, 246, 255, 924
Bst4CI	ACNGT	1 cut(s)	328
Bst6I	CTCTTC	1 cut(s)	897
BstC8I	GCNNGC	5 cut(s)	445, 579, 733, 988, 1018
BstDEI	CTNAG	1 cut(s)	1005
BstDSI	CCRYGG	1 cut(s)	489
BstF5I	GGATG	1 cut(s)	240
BstFNI	CGCG	1 cut(s)	22
BstHHI	GCGC	1 cut(s)	643
BstKTI	GATC	5 cut(s)	46, 106, 479, 877, 1026
BstMAI	GTCTC	1 cut(s)	513
BstMBI	GATC	5 cut(s)	43, 103, 476, 874, 1023
BstMWI	GCNNNNNNNGC	1 cut(s)	725
BstNI	CCWGG	4 cut(s)	67, 246, 255, 924
BstSCI	CCNGG	4 cut(s)	65, 244, 253, 922
BstSFI	CTRYAG	2 cut(s)	441, 717
BstSLI	GKGCMC	1 cut(s)	468
BstUI	CGCG	1 cut(s)	22
BstV1I	GCAGC	4 cut(s)	288, 700, 703, 715
BsuRI	GGCC	2 cut(s)	64, 447
BtgI	CCRYGG	1 cut(s)	489
BtgZI	GCGATG	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	240
BtsI	GCAGTG	1 cut(s)	887
BtsIMutI	CAGTG	3 cut(s)	877, 887, 978
BveI	ACCTGC	2 cut(s)	907, 1000
Cac8I	GCNNGC	5 cut(s)	445, 579, 733, 988, 1018
CaiI	CAGNNNCTG	1 cut(s)	716
CciI	TCATGA	1 cut(s)	828
CfoI	GCGC	1 cut(s)	643
Cfr13I	GGNCC	3 cut(s)	63, 446, 919
CseI	GACGC	1 cut(s)	306
Csp6I	GTAC	1 cut(s)	751
CspCI	CAANNNNNGTGG	2 cut(s)	22, 57
CviAII	CATG	7 cut(s)	230, 368, 490, 705, 829, 956, 965
CviQI	GTAC	1 cut(s)	751
DdeI	CTNAG	1 cut(s)	1005
DpnI	GATC	5 cut(s)	45, 105, 478, 876, 1025
DpnII	GATC	5 cut(s)	43, 103, 476, 874, 1023
DraIII	CACNNNGTG	1 cut(s)	122
Eam1104I	CTCTTC	1 cut(s)	897
EarI	CTCTTC	1 cut(s)	897
Eco130I	CCWWGG	2 cut(s)	489, 694
Eco24I	GRGCYC	1 cut(s)	886
Eco31I	GGTCTC	1 cut(s)	513
Eco47I	GGWCC	1 cut(s)	919
Eco57I	CTGAAG	2 cut(s)	213, 1002
EcoO109I	RGGNCCY	2 cut(s)	446, 919
EcoRI	GAATTC	1 cut(s)	791
EcoRII	CCWGG	4 cut(s)	65, 244, 253, 922
EcoT14I	CCWWGG	2 cut(s)	489, 694
EcoT38I	GRGCYC	1 cut(s)	886
ErhI	CCWWGG	2 cut(s)	489, 694
FaeI	CATG	7 cut(s)	233, 371, 493, 708, 832, 959, 968
FalI	AAGNNNNNCTT	2 cut(s)	398, 430
FaqI	GGGAC	2 cut(s)	589, 905
FatI	CATG	7 cut(s)	229, 367, 489, 704, 828, 955, 964
FauI	CCCGC	1 cut(s)	614
FbaI	TGATCA	2 cut(s)	874, 1023
Fnu4HI	GCNGC	4 cut(s)	302, 714, 717, 729
FokI	GGATG	1 cut(s)	227
FriOI	GRGCYC	1 cut(s)	886
Fsp4HI	GCNGC	4 cut(s)	302, 714, 717, 729
FspBI	CTAG	1 cut(s)	75
GlaI	GCGC	1 cut(s)	642
GluI	GCNGC	4 cut(s)	302, 714, 717, 729
GsaI	CCCAGC	1 cut(s)	308
GsuI	CTGGAG	1 cut(s)	495
HaeIII	GGCC	2 cut(s)	64, 447
HgaI	GACGC	1 cut(s)	306
HhaI	GCGC	1 cut(s)	643
Hin1II	CATG	7 cut(s)	233, 371, 493, 708, 832, 959, 968
Hin6I	GCGC	1 cut(s)	641
HinP1I	GCGC	1 cut(s)	641
HindIII	AAGCTT	2 cut(s)	800, 1018
HinfI	GANTC	4 cut(s)	181, 205, 566, 602
HphI	GGTGA	1 cut(s)	532
Hpy166II	GTNNAC	1 cut(s)	570
Hpy188I	TCNGA	2 cut(s)	90, 808
Hpy188III	TCNNGA	4 cut(s)	512, 829, 842, 1027
Hpy8I	GTNNAC	1 cut(s)	570
HpyAV	CCTTC	1 cut(s)	366
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4IV	ACGT	1 cut(s)	121
HpyCH4V	TGCA	6 cut(s)	4, 433, 443, 719, 892, 978
HpyF10VI	GCNNNNNNNGC	1 cut(s)	725
HpyF3I	CTNAG	1 cut(s)	1005
HpySE526I	ACGT	1 cut(s)	121
Hsp92II	CATG	7 cut(s)	233, 371, 493, 708, 832, 959, 968
HspAI	GCGC	1 cut(s)	641
Ksp22I	TGATCA	2 cut(s)	874, 1023
Kzo9I	GATC	5 cut(s)	43, 103, 476, 874, 1023
LmnI	GCTCC	3 cut(s)	90, 364, 889
Lsp1109I	GCAGC	4 cut(s)	288, 700, 703, 715
MaeI	CTAG	1 cut(s)	75
MaeII	ACGT	1 cut(s)	121
MaeIII	GTNAC	4 cut(s)	182, 262, 322, 520
MalI	GATC	5 cut(s)	45, 105, 478, 876, 1025
MboI	GATC	5 cut(s)	43, 103, 476, 874, 1023
MboII	GAAGA	2 cut(s)	157, 914
MfeI	CAATTG	1 cut(s)	939
MhlI	GDGCHC	3 cut(s)	468, 687, 886
MluCI	AATT	5 cut(s)	396, 428, 678, 791, 939
MlyI	GAGTC	3 cut(s)	190, 575, 611
MmeI	TCCRAC	2 cut(s)	68, 245
MnlI	CCTC	9 cut(s)	27, 37, 57, 280, 498, 666, 718, 825, 943
MseI	TTAA	4 cut(s)	399, 557, 677, 1032
MslI	CAYNNNNRTG	2 cut(s)	488, 494
MspA1I	CMGCKG	1 cut(s)	713
MspR9I	CCNGG	4 cut(s)	67, 246, 255, 924
MunI	CAATTG	1 cut(s)	939
Mva1269I	GAATGC	1 cut(s)	824
MvaI	CCWGG	4 cut(s)	67, 246, 255, 924
MvnI	CGCG	1 cut(s)	22
MwoI	GCNNNNNNNGC	1 cut(s)	725
NcoI	CCATGG	1 cut(s)	489
NdeII	GATC	5 cut(s)	43, 103, 476, 874, 1023
NlaIII	CATG	7 cut(s)	233, 371, 493, 708, 832, 959, 968
NlaIV	GGNNCC	2 cut(s)	885, 921
NmeAIII	GCCGAG	1 cut(s)	937
NmuCI	GTSAC	3 cut(s)	182, 322, 520
PagI	TCATGA	1 cut(s)	828
PctI	GAATGC	1 cut(s)	824
PfeI	GAWTC	1 cut(s)	205
PkrI	GCNGC	4 cut(s)	303, 715, 718, 730
PleI	GAGTC	3 cut(s)	189, 574, 610
PpsI	GAGTC	3 cut(s)	189, 574, 610
PpuMI	RGGWCCY	1 cut(s)	919
PshBI	ATTAAT	1 cut(s)	399
PsiI	TTATAA	1 cut(s)	273
Psp5II	RGGWCCY	1 cut(s)	919
Psp6I	CCWGG	4 cut(s)	65, 244, 253, 922
PspFI	CCCAGC	1 cut(s)	304
PspGI	CCWGG	4 cut(s)	65, 244, 253, 922
PspN4I	GGNNCC	2 cut(s)	885, 921
PspPI	GGNCC	3 cut(s)	63, 446, 919
PspPPI	RGGWCCY	1 cut(s)	919
PstI	CTGCAG	2 cut(s)	445, 721
PstNI	CAGNNNCTG	1 cut(s)	716
PvuII	CAGCTG	1 cut(s)	713
RsaI	GTAC	1 cut(s)	752
RsaNI	GTAC	1 cut(s)	751
RseI	CAYNNNNRTG	2 cut(s)	488, 494
SaqAI	TTAA	4 cut(s)	399, 557, 677, 1032
SatI	GCNGC	4 cut(s)	302, 714, 717, 729
Sau3AI	GATC	5 cut(s)	43, 103, 476, 874, 1023
Sau96I	GGNCC	3 cut(s)	63, 446, 919
SchI	GAGTC	3 cut(s)	190, 575, 611
ScrFI	CCNGG	4 cut(s)	67, 246, 255, 924
SduI	GDGCHC	3 cut(s)	468, 687, 886
SfcI	CTRYAG	2 cut(s)	441, 717
SinI	GGWCC	1 cut(s)	919
SmiMI	CAYNNNNRTG	2 cut(s)	488, 494
SmlI	CTYRAG	1 cut(s)	625
SmoI	CTYRAG	1 cut(s)	625
Sse9I	AATT	5 cut(s)	396, 428, 678, 791, 939
SsiI	CCGC	3 cut(s)	20, 607, 763
SspI	AATATT	1 cut(s)	769
SspMI	CTAG	1 cut(s)	75
StyD4I	CCNGG	4 cut(s)	65, 244, 253, 922
StyI	CCWWGG	2 cut(s)	489, 694
TaaI	ACNGT	1 cut(s)	328
TaiI	ACGT	1 cut(s)	124
TaqI	TCGA	2 cut(s)	139, 179
TasI	AATT	5 cut(s)	396, 428, 678, 791, 939
TfiI	GAWTC	1 cut(s)	205
Tru1I	TTAA	4 cut(s)	399, 557, 677, 1032
Tru9I	TTAA	4 cut(s)	399, 557, 677, 1032
TscAI	CASTG	3 cut(s)	884, 894, 985
TseFI	GTSAC	3 cut(s)	182, 322, 520
TseI	GCWGC	4 cut(s)	301, 713, 716, 728
Tsp45I	GTSAC	3 cut(s)	182, 322, 520
TspDTI	ATGAA	4 cut(s)	218, 406, 817, 1029
TspGWI	ACGGA	1 cut(s)	534
TspRI	CASTG	3 cut(s)	884, 894, 985
VpaK11BI	GGWCC	1 cut(s)	919
VspI	ATTAAT	1 cut(s)	399
XapI	RAATTY	1 cut(s)	791
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.