Rorug03G0148100

UPF0554 protein C2orf43 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0002532
Physical Location & Seq
Forward (+)
12170384 .. 12172065
1682 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0148100.1

Sequence Viewer

Length: 1029 bp
ATGGAGTCCCTCGCTAAACTTAACCACCGTCACCAGCCCCTCCACCTCTCAATCAATCCCAACCGTCCATCTTTCCCTAACCCCATTTCTTCCTTCCGGCCGCCGCGCTCCTCCTCACCTTCCAACTTCTCCTCCCTCAAAATCCGAGCCTCCTCCTCGGCGGACCCACCTCATCATACCCCCCAAAACCCTAAACCCTCGTTCCTCCAAACCCTATCCCCTCTCGCCTGCGCCGCCATAACCGCCGCCGCATTCTTCACCATGCGGTTCCACCCCACCAAGCCCGCCGTCGCCGCCCCAATCGCGCCGGCCACGGTGGAGCCCAGGGAAGAAACCGCAGGGAAATTGCCGTATGAGGACGCGGAGAGACAAATTGAGGAGCGATTGAGCCGTGACCCGAACGATGTCGAAGCGCTTCGGTCTCTGATGGAGGTGAAAATCAAAGCCCACAAGCTAACCGAAGCGGTTCAGGTGCTGGACCGGTTGATCGAGATCGAACCGGAAGACTATGAGTGGCAATTGCTCAAGGCGAATGTTCATACTTATTTGGGTGAGAATGACCTAGCTGCTAGTGAATTCGAGGACATTTTGGCCAAGGACCCTCTTCGGGTTGAGGCCTATCATGGGCTGGTGATGTCTGCGTCGCAGTCCGAAGAGAAATTGAAGCTCGTGTTGAAGAGGGTTGAGAAGGCAATGGAGGGGTGCAAGAAGCAGGGGAACACTTCGGATGTGAGGGACTTTAAGCTGTTGATTGCTCAAATTCGAGTAATGGAGGCCGAATACAAGGATGCATTGGAGCTGTATCAAGAGCTTGTGAGGGAGGAGCCGAGGGATTTCAGGCCGTATCTGTGTCAGGGAATTATATACACTCTGTTGAGGAAGAAGAATGAGGCTGAGAAACAATTCGCAACATTCAGGAAGCTTGTTCCCAAGAATCATCCTTACAAGGAGTACTTCGATGATAACATGTTTGCGACCAAGCTTTTTGGGGCAAAGGTGGACAGGGAGACAGCGGGGTCGAACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LIDHydrolase

Protein Analysis

342

Amino Acids

38.91

Weight (kDa)

6.82

Isoelectric Point (pI)

43.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_19 PF14559 118 - 178 2.6e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1015
AccII CGCG 3 cut(s) 106, 305, 362
AcoI YGGCCR 3 cut(s) 98, 309, 591
AcsI RAATTY 2 cut(s) 575, 759
AfaI GTAC 1 cut(s) 953
AfeI AGCGCT 1 cut(s) 414
AfiI CCNNNNNNNGG 2 cut(s) 607, 624
AflIII ACRYGT 2 cut(s) 966, 1023
AgeI ACCGGT 1 cut(s) 480
AgsI TTSAA 2 cut(s) 664, 676
AjnI CCWGG 1 cut(s) 323
AluBI AGCT 8 cut(s) 454, 566, 667, 745, 799, 811, 922, 982
AluI AGCT 8 cut(s) 454, 566, 667, 745, 799, 811, 922, 982
Alw26I GTCTC 3 cut(s) 361, 426, 1001
AlwNI CAGNNNCTG 1 cut(s) 475
Aor51HI AGCGCT 1 cut(s) 414
AoxI GGCC 6 cut(s) 98, 309, 591, 615, 774, 839
ApeKI GCWGC 1 cut(s) 566
ApoI RAATTY 2 cut(s) 575, 759
AsiGI ACCGGT 1 cut(s) 480
Asp700I GAANNNNTTC 3 cut(s) 414, 465, 902
AspLEI GCGC 4 cut(s) 108, 233, 307, 415
AspS9I GGNCC 3 cut(s) 163, 478, 598
AsuHPI GGTGA 6 cut(s) 23, 108, 250, 445, 563, 643
AvaII GGWCC 3 cut(s) 163, 478, 598
BalI TGGCCA 1 cut(s) 593
BanII GRGCYC 1 cut(s) 324
BauI CACGAG 1 cut(s) 668
BbsI GAAGAC 1 cut(s) 510
BbvI GCAGC 1 cut(s) 553
BccI CCATC 2 cut(s) 76, 421
BceAI ACGGC 4 cut(s) 272, 334, 375, 826
BciT130I CCWGG 1 cut(s) 325
BcoDI GTCTC 3 cut(s) 361, 426, 1001
BfaI CTAG 2 cut(s) 563, 570
BfoI RGCGCY 1 cut(s) 416
BisI GCNGC 7 cut(s) 101, 104, 234, 246, 249, 294, 567
BlsI GCNGC 7 cut(s) 102, 105, 235, 247, 250, 295, 568
BmcAI AGTACT 1 cut(s) 953
Bme1390I CCNGG 1 cut(s) 325
Bme18I GGWCC 3 cut(s) 163, 478, 598
BmgT120I GGNCC 3 cut(s) 163, 478, 598
BmiI GGNNCC 5 cut(s) 165, 269, 321, 600, 825
BmrFI CCNGG 1 cut(s) 325
BmsI GCATC 1 cut(s) 778
BpiI GAAGAC 1 cut(s) 510
BpuEI CTTGAG 1 cut(s) 509
BsaBI GATNNNNATC 1 cut(s) 491
BsaI GGTCTC 1 cut(s) 426
BsaJI CCNNGG 6 cut(s) 156, 312, 323, 324, 594, 827
BsaWI WCCGGW 2 cut(s) 480, 499
BsaXI ACNNNNNCTCC 2 cut(s) 116, 146
Bsc4I CCNNNNNNNGG 2 cut(s) 607, 624
Bse118I RCCGGY 2 cut(s) 307, 480
Bse3DI GCAATG 1 cut(s) 699
Bse8I GATNNNNATC 1 cut(s) 491
BseBI CCWGG 1 cut(s) 325
BseDI CCNNGG 6 cut(s) 156, 312, 323, 324, 594, 827
BseGI GGATG 3 cut(s) 733, 793, 937
BseJI GATNNNNATC 1 cut(s) 491
BseLI CCNNNNNNNGG 2 cut(s) 607, 624
BseMI GCAATG 1 cut(s) 699
BseMII CTCAG 1 cut(s) 885
BseRI GAGGAG 7 cut(s) 100, 103, 121, 142, 145, 392, 836
BseX3I CGGCCG 1 cut(s) 98
BseXI GCAGC 1 cut(s) 553
Bsh1236I CGCG 3 cut(s) 106, 305, 362
Bsh1285I CGRYCG 1 cut(s) 101
BshFI GGCC 6 cut(s) 100, 311, 593, 617, 776, 841
BshTI ACCGGT 1 cut(s) 480
BsiEI CGRYCG 1 cut(s) 101
BsiSI CCGG 4 cut(s) 97, 308, 481, 500
BslFI GGGAC 1 cut(s) 749
BslI CCNNNNNNNGG 2 cut(s) 607, 624
BsmAI GTCTC 3 cut(s) 361, 426, 1001
BsmFI GGGAC 1 cut(s) 749
BsmI GAATGC 1 cut(s) 251
BsnI GGCC 6 cut(s) 100, 311, 593, 617, 776, 841
Bso31I GGTCTC 1 cut(s) 426
Bsp1286I GDGCHC 1 cut(s) 324
Bsp143I GATC 2 cut(s) 486, 492
BspANI GGCC 6 cut(s) 100, 311, 593, 617, 776, 841
BspCNI CTCAG 1 cut(s) 886
BspFNI CGCG 3 cut(s) 106, 305, 362
BspLI GGNNCC 5 cut(s) 165, 269, 321, 600, 825
BspTNI GGTCTC 1 cut(s) 426
BsrDI GCAATG 1 cut(s) 699
BsrFI RCCGGY 2 cut(s) 307, 480
BssAI RCCGGY 2 cut(s) 307, 480
BssECI CCNNGG 6 cut(s) 156, 312, 323, 324, 594, 827
BssMI GATC 2 cut(s) 486, 492
BssSI CACGAG 1 cut(s) 668
BssT1I CCWWGG 1 cut(s) 594
Bst2BI CACGAG 1 cut(s) 668
Bst2UI CCWGG 1 cut(s) 325
Bst4CI ACNGT 3 cut(s) 29, 65, 316
Bst6I CTCTTC 3 cut(s) 609, 648, 671
BstC8I GCNNGC 3 cut(s) 229, 285, 309
BstDEI CTNAG 1 cut(s) 894
BstDSI CCRYGG 1 cut(s) 312
BstF5I GGATG 3 cut(s) 733, 793, 937
BstFNI CGCG 3 cut(s) 106, 305, 362
BstH2I RGCGCY 1 cut(s) 416
BstHHI GCGC 4 cut(s) 108, 233, 307, 415
BstKTI GATC 2 cut(s) 489, 495
BstMAI GTCTC 3 cut(s) 361, 426, 1001
BstMBI GATC 2 cut(s) 486, 492
BstMCI CGRYCG 1 cut(s) 101
BstMWI GCNNNNNNNGC 4 cut(s) 233, 242, 293, 302
BstNI CCWGG 1 cut(s) 325
BstNSI RCATGY 2 cut(s) 970, 1027
BstSCI CCNGG 1 cut(s) 323
BstUI CGCG 3 cut(s) 106, 305, 362
BstV1I GCAGC 1 cut(s) 553
BstV2I GAAGAC 1 cut(s) 510
BstZI CGGCCG 1 cut(s) 98
BsuRI GGCC 6 cut(s) 100, 311, 593, 617, 776, 841
BtgI CCRYGG 1 cut(s) 312
BtsCI GGATG 3 cut(s) 733, 793, 937
Cac8I GCNNGC 3 cut(s) 229, 285, 309
CaiI CAGNNNCTG 1 cut(s) 475
CfoI GCGC 4 cut(s) 108, 233, 307, 415
Cfr10I RCCGGY 2 cut(s) 307, 480
Cfr13I GGNCC 3 cut(s) 163, 478, 598
CseI GACGC 2 cut(s) 368, 630
Csp6I GTAC 1 cut(s) 952
CspAI ACCGGT 1 cut(s) 480
CviAII CATG 4 cut(s) 262, 623, 967, 1024
CviQI GTAC 1 cut(s) 952
DdeI CTNAG 1 cut(s) 894
DpnI GATC 2 cut(s) 488, 494
DpnII GATC 2 cut(s) 486, 492
DrdI GACNNNNNNGTC 1 cut(s) 1015
DseDI GACNNNNNNGTC 1 cut(s) 1015
EaeI YGGCCR 3 cut(s) 98, 309, 591
EagI CGGCCG 1 cut(s) 98
Eam1104I CTCTTC 3 cut(s) 609, 648, 671
EarI CTCTTC 3 cut(s) 609, 648, 671
EciI GGCGGA 1 cut(s) 176
EclXI CGGCCG 1 cut(s) 98
Eco130I CCWWGG 1 cut(s) 594
Eco147I AGGCCT 1 cut(s) 617
Eco24I GRGCYC 1 cut(s) 324
Eco31I GGTCTC 1 cut(s) 426
Eco47I GGWCC 3 cut(s) 163, 478, 598
Eco47III AGCGCT 1 cut(s) 414
Eco52I CGGCCG 1 cut(s) 98
EcoO109I RGGNCCY 1 cut(s) 598
EcoRI GAATTC 1 cut(s) 575
EcoRII CCWGG 1 cut(s) 323
EcoT14I CCWWGG 1 cut(s) 594
EcoT22I ATGCAT 1 cut(s) 793
EcoT38I GRGCYC 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 594
FaeI CATG 4 cut(s) 265, 626, 970, 1027
FalI AAGNNNNNCTT 2 cut(s) 938, 970
FaqI GGGAC 1 cut(s) 749
FatI CATG 4 cut(s) 261, 622, 966, 1023
FauI CCCGC 2 cut(s) 292, 1006
Fnu4HI GCNGC 7 cut(s) 101, 104, 234, 246, 249, 294, 567
FokI GGATG 3 cut(s) 740, 800, 924
FriOI GRGCYC 1 cut(s) 324
Fsp4HI GCNGC 7 cut(s) 101, 104, 234, 246, 249, 294, 567
FspBI CTAG 2 cut(s) 563, 570
GlaI GCGC 4 cut(s) 107, 232, 306, 414
GluI GCNGC 7 cut(s) 101, 104, 234, 246, 249, 294, 567
HaeII RGCGCY 1 cut(s) 416
HaeIII GGCC 6 cut(s) 100, 311, 593, 617, 776, 841
HapII CCGG 4 cut(s) 97, 308, 481, 500
HgaI GACGC 2 cut(s) 368, 630
HhaI GCGC 4 cut(s) 108, 233, 307, 415
Hin1II CATG 4 cut(s) 265, 626, 970, 1027
Hin6I GCGC 4 cut(s) 106, 231, 305, 413
HinP1I GCGC 4 cut(s) 106, 231, 305, 413
HindIII AAGCTT 2 cut(s) 920, 980
HinfI GANTC 2 cut(s) 5, 934
HpaII CCGG 4 cut(s) 97, 308, 481, 500
HphI GGTGA 6 cut(s) 23, 108, 250, 445, 563, 643
Hpy166II GTNNAC 1 cut(s) 1000
Hpy188I TCNGA 4 cut(s) 146, 426, 652, 727
Hpy188III TCNNGA 3 cut(s) 490, 806, 916
Hpy8I GTNNAC 1 cut(s) 1000
Hpy99I CGWCG 2 cut(s) 293, 646
HpyAV CCTTC 3 cut(s) 103, 129, 682
HpyCH4III ACNGT 3 cut(s) 29, 65, 316
HpyCH4V TGCA 2 cut(s) 705, 791
HpyF10VI GCNNNNNNNGC 4 cut(s) 233, 242, 293, 302
HpyF3I CTNAG 1 cut(s) 894
Hsp92II CATG 4 cut(s) 265, 626, 970, 1027
HspAI GCGC 4 cut(s) 106, 231, 305, 413
KroI GCCGGC 1 cut(s) 307
KroNI GCCGGC 1 cut(s) 309
Kzo9I GATC 2 cut(s) 486, 492
LmnI GCTCC 5 cut(s) 113, 319, 379, 796, 823
Lsp1109I GCAGC 1 cut(s) 553
LweI GCATC 1 cut(s) 778
MaeI CTAG 2 cut(s) 563, 570
MaeIII GTNAC 2 cut(s) 29, 392
MalI GATC 2 cut(s) 488, 494
MboI GATC 2 cut(s) 486, 492
MboII GAAGA 9 cut(s) 81, 247, 341, 515, 596, 665, 688, 892, 895
MfeI CAATTG 1 cut(s) 518
MhlI GDGCHC 1 cut(s) 324
MlsI TGGCCA 1 cut(s) 593
MluCI AATT 8 cut(s) 344, 372, 518, 575, 659, 759, 858, 902
MluNI TGGCCA 1 cut(s) 593
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 147
Mox20I TGGCCA 1 cut(s) 593
Mph1103I ATGCAT 1 cut(s) 793
MroNI GCCGGC 1 cut(s) 307
MroXI GAANNNNTTC 3 cut(s) 414, 465, 902
MscI TGGCCA 1 cut(s) 593
MseI TTAA 2 cut(s) 21, 741
Msp20I TGGCCA 1 cut(s) 593
MspA1I CMGCKG 1 cut(s) 1013
MspI CCGG 4 cut(s) 97, 308, 481, 500
MspR9I CCNGG 1 cut(s) 325
MunI CAATTG 1 cut(s) 518
Mva1269I GAATGC 1 cut(s) 251
MvaI CCWGG 1 cut(s) 325
MvnI CGCG 3 cut(s) 106, 305, 362
MwoI GCNNNNNNNGC 4 cut(s) 233, 242, 293, 302
NaeI GCCGGC 1 cut(s) 309
NdeII GATC 2 cut(s) 486, 492
NgoMIV GCCGGC 1 cut(s) 307
NlaIII CATG 4 cut(s) 265, 626, 970, 1027
NlaIV GGNNCC 5 cut(s) 165, 269, 321, 600, 825
NmeAIII GCCGAG 2 cut(s) 137, 852
NmuCI GTSAC 2 cut(s) 29, 392
NsiI ATGCAT 1 cut(s) 793
NspI RCATGY 2 cut(s) 970, 1027
PasI CCCWGGG 1 cut(s) 324
PceI AGGCCT 1 cut(s) 617
PciI ACATGT 2 cut(s) 966, 1023
PctI GAATGC 1 cut(s) 251
PdiI GCCGGC 1 cut(s) 309
PdmI GAANNNNTTC 3 cut(s) 414, 465, 902
PfeI GAWTC 1 cut(s) 934
PinAI ACCGGT 1 cut(s) 480
PkrI GCNGC 7 cut(s) 102, 105, 235, 247, 250, 295, 568
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PpuMI RGGWCCY 1 cut(s) 598
PscI ACATGT 2 cut(s) 966, 1023
Psp5II RGGWCCY 1 cut(s) 598
Psp6I CCWGG 1 cut(s) 323
PspGI CCWGG 1 cut(s) 323
PspN4I GGNNCC 5 cut(s) 165, 269, 321, 600, 825
PspPI GGNCC 3 cut(s) 163, 478, 598
PspPPI RGGWCCY 1 cut(s) 598
PstNI CAGNNNCTG 1 cut(s) 475
RsaI GTAC 1 cut(s) 953
RsaNI GTAC 1 cut(s) 952
SaqAI TTAA 2 cut(s) 21, 741
SatI GCNGC 7 cut(s) 101, 104, 234, 246, 249, 294, 567
Sau3AI GATC 2 cut(s) 486, 492
Sau96I GGNCC 3 cut(s) 163, 478, 598
ScaI AGTACT 1 cut(s) 953
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 325
SduI GDGCHC 1 cut(s) 324
SfaNI GCATC 1 cut(s) 778
SinI GGWCC 3 cut(s) 163, 478, 598
SmlI CTYRAG 1 cut(s) 524
SmoI CTYRAG 1 cut(s) 524
Sse9I AATT 8 cut(s) 344, 372, 518, 575, 659, 759, 858, 902
SseBI AGGCCT 1 cut(s) 617
SspMI CTAG 2 cut(s) 563, 570
StuI AGGCCT 1 cut(s) 617
StyD4I CCNGG 1 cut(s) 323
StyI CCWWGG 1 cut(s) 594
TaaI ACNGT 3 cut(s) 29, 65, 316
TaqI TCGA 7 cut(s) 408, 489, 495, 579, 763, 957, 1019
TaqII GACCGA 1 cut(s) 408
TasI AATT 8 cut(s) 344, 372, 518, 575, 659, 759, 858, 902
TatI WGTACW 1 cut(s) 951
TauI GCSGC 6 cut(s) 103, 106, 236, 248, 251, 296
TfiI GAWTC 1 cut(s) 934
Tru1I TTAA 2 cut(s) 21, 741
Tru9I TTAA 2 cut(s) 21, 741
TseFI GTSAC 2 cut(s) 29, 392
TseI GCWGC 1 cut(s) 566
Tsp45I GTSAC 2 cut(s) 29, 392
TspDTI ATGAA 1 cut(s) 527
VpaK11BI GGWCC 3 cut(s) 163, 478, 598
XapI RAATTY 2 cut(s) 575, 759
XceI RCATGY 2 cut(s) 970, 1027
XmnI GAANNNNTTC 3 cut(s) 414, 465, 902
XspI CTAG 2 cut(s) 563, 570
ZrmI AGTACT 1 cut(s) 953
Zsp2I ATGCAT 1 cut(s) 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.