Rroxscaffold_6G00406380

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0010737
Physical Location & Seq
Reverse (-)
28836956 .. 28839773
2818 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00406380.1

Sequence Viewer

Length: 528 bp
ATGTTGGGGAGCTTGCTTACCAGATGTCTCATAATGTCTTTTGGGTATGCATACCCTGCATTTGAGTGTTACAAAATCGTGGAGAAGAACAGAGTTGAGATTGAAGAACTTCGGTTTTGGTGTCAATACTGGATTATTGTGGCTGCGCTAACAGTTCTTGAAAGGCTTGGAGATGTATTCGTTGCATGGTTGCCCATGTATGGTGAGGCAAAGGTTGCCATTTTCATCTATCTTTGGTATCCAAAAACCAGGGGAACTGGGTACATATACAAGACCCTGTTGAGGCCTTATGTATCAAAGCATGAAACAGACATTGACAGGAAAATACTGGAGATGAGAGCAAGGGCATGGGATCTGACCGTTTTCTACTGGCAAAACTTCGCCCAATATGGGCAGACAGCTTTCTTCCAATTCCTGAATTACATGGCTGCTCAATCATCGAAAATGACCAAAGCCACAGCTGAGTCGAATGGCTCCGCTGCAAGCACAAAGCCGAATGGTGCTTCAGGCGCTTCAAAAGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

175

Amino Acids

20.21

Weight (kDa)

8.88

Isoelectric Point (pI)

31.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 19 - 97 3.8e-24 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010737)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42560 AT5G42560 AT5G42560
fragaria_vesca FvH4_6g19930
malus_domestica MD12G1036900.v1.1 MD14G1034500.v1.1 MD14G1035900.v1.1
prunus_persica Prupe.7G098200_v2.0.a1
pyrus_communis pycom14g03170
rosa_chinensis RchiOBHm_Chr3g0475331
rosa_laevigata RLG00000023851
rosa_multiflora Rmu_co8097434.1_g000001 Rmu_ssc0000140.1_g000014
rosa_roxburghii Rroxscaffold_6G00406380
rosa_rugosa Rorug03G0148200
rosa_samantha Rh3AG198100 Rh3BG228300 Rh3CG222600 Rh3DG223500
rosa_wichuraiana Rw3G018000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 477
AclWI GGATC 1 cut(s) 360
AcuI CTGAAG 1 cut(s) 489
AfaI GTAC 1 cut(s) 263
AfiI CCNNNNNNNGG 3 cut(s) 200, 282, 390
AgsI TTSAA 3 cut(s) 104, 161, 516
AjnI CCWGG 1 cut(s) 248
AluBI AGCT 3 cut(s) 12, 401, 461
AluI AGCT 3 cut(s) 12, 401, 461
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 1 cut(s) 360
AoxI GGCC 1 cut(s) 284
ApeKI GCWGC 3 cut(s) 143, 428, 479
Asp700I GAANNNNTTC 1 cut(s) 108
AspLEI GCGC 2 cut(s) 148, 512
AsuHPI GGTGA 1 cut(s) 215
BbvI GCAGC 3 cut(s) 130, 415, 466
BciT130I CCWGG 1 cut(s) 250
BciVI GTATCC 1 cut(s) 249
BcoDI GTCTC 1 cut(s) 32
BfoI RGCGCY 1 cut(s) 513
BfuI GTATCC 1 cut(s) 249
BisI GCNGC 3 cut(s) 144, 429, 480
BlsI GCNGC 3 cut(s) 145, 430, 481
Bme1390I CCNGG 1 cut(s) 250
BmiI GGNNCC 1 cut(s) 475
BmrFI CCNGG 1 cut(s) 250
BmrI ACTGGG 1 cut(s) 267
BmuI ACTGGG 1 cut(s) 267
BpmI CTGGAG 1 cut(s) 350
BsaJI CCNNGG 1 cut(s) 249
Bsc4I CCNNNNNNNGG 3 cut(s) 200, 282, 390
Bse1I ACTGG 4 cut(s) 134, 262, 333, 374
BseBI CCWGG 1 cut(s) 250
BseDI CCNNGG 1 cut(s) 249
BseLI CCNNNNNNNGG 3 cut(s) 200, 282, 390
BseMII CTCAG 1 cut(s) 453
BseNI ACTGG 4 cut(s) 134, 262, 333, 374
BseXI GCAGC 3 cut(s) 130, 415, 466
BshFI GGCC 1 cut(s) 286
BslI CCNNNNNNNGG 3 cut(s) 200, 282, 390
BsmAI GTCTC 1 cut(s) 32
BsnI GGCC 1 cut(s) 286
Bsp143I GATC 1 cut(s) 352
BspACI CCGC 1 cut(s) 477
BspANI GGCC 1 cut(s) 286
BspCNI CTCAG 1 cut(s) 454
BspLI GGNNCC 1 cut(s) 475
BspPI GGATC 1 cut(s) 360
BsrI ACTGG 4 cut(s) 134, 262, 333, 374
BssECI CCNNGG 1 cut(s) 249
BssMI GATC 1 cut(s) 352
Bst2UI CCWGG 1 cut(s) 250
Bst4CI ACNGT 2 cut(s) 154, 361
BstAPI GCANNNNNTGC 2 cut(s) 56, 215
BstC8I GCNNGC 2 cut(s) 14, 484
BstDEI CTNAG 1 cut(s) 462
BstH2I RGCGCY 1 cut(s) 513
BstHHI GCGC 2 cut(s) 148, 512
BstKTI GATC 1 cut(s) 355
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 1 cut(s) 352
BstMWI GCNNNNNNNGC 3 cut(s) 56, 215, 509
BstNI CCWGG 1 cut(s) 250
BstSCI CCNGG 1 cut(s) 248
BstV1I GCAGC 3 cut(s) 130, 415, 466
BstX2I RGATCY 1 cut(s) 352
BstYI RGATCY 1 cut(s) 352
BsuI GTATCC 1 cut(s) 249
BsuRI GGCC 1 cut(s) 286
Cac8I GCNNGC 2 cut(s) 14, 484
CfoI GCGC 2 cut(s) 148, 512
Csp6I GTAC 1 cut(s) 262
CviAII CATG 5 cut(s) 186, 196, 302, 348, 424
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 1 cut(s) 462
DpnI GATC 1 cut(s) 354
DpnII GATC 1 cut(s) 352
Eco147I AGGCCT 1 cut(s) 286
Eco57I CTGAAG 1 cut(s) 489
EcoRII CCWGG 1 cut(s) 248
EcoT22I ATGCAT 1 cut(s) 52
FaeI CATG 5 cut(s) 189, 199, 305, 351, 427
FatI CATG 5 cut(s) 185, 195, 301, 347, 423
Fnu4HI GCNGC 3 cut(s) 144, 429, 480
Fsp4HI GCNGC 3 cut(s) 144, 429, 480
GlaI GCGC 2 cut(s) 147, 511
GluI GCNGC 3 cut(s) 144, 429, 480
GsuI CTGGAG 1 cut(s) 350
HaeII RGCGCY 1 cut(s) 513
HaeIII GGCC 1 cut(s) 286
HhaI GCGC 2 cut(s) 148, 512
Hin1II CATG 5 cut(s) 189, 199, 305, 351, 427
Hin6I GCGC 2 cut(s) 146, 510
HinP1I GCGC 2 cut(s) 146, 510
HinfI GANTC 1 cut(s) 464
HphI GGTGA 1 cut(s) 215
Hpy188I TCNGA 1 cut(s) 357
Hpy188III TCNNGA 2 cut(s) 158, 415
HpyCH4III ACNGT 2 cut(s) 154, 361
HpyCH4V TGCA 4 cut(s) 50, 59, 185, 482
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 215, 509
HpyF3I CTNAG 1 cut(s) 462
Hsp92II CATG 5 cut(s) 189, 199, 305, 351, 427
HspAI GCGC 2 cut(s) 146, 510
Kzo9I GATC 1 cut(s) 352
LmnI GCTCC 2 cut(s) 9, 479
Lsp1109I GCAGC 3 cut(s) 130, 415, 466
MaeIII GTNAC 1 cut(s) 68
MalI GATC 1 cut(s) 354
MboI GATC 1 cut(s) 352
MboII GAAGA 3 cut(s) 97, 116, 397
MflI RGATCY 1 cut(s) 352
MluCI AATT 2 cut(s) 410, 418
MlyI GAGTC 1 cut(s) 473
MnlI CCTC 2 cut(s) 199, 276
Mph1103I ATGCAT 1 cut(s) 52
MroXI GAANNNNTTC 1 cut(s) 108
MslI CAYNNNNRTG 1 cut(s) 64
MspA1I CMGCKG 2 cut(s) 461, 479
MspR9I CCNGG 1 cut(s) 250
MvaI CCWGG 1 cut(s) 250
MwoI GCNNNNNNNGC 3 cut(s) 56, 215, 509
NdeII GATC 1 cut(s) 352
NlaIII CATG 5 cut(s) 189, 199, 305, 351, 427
NlaIV GGNNCC 1 cut(s) 475
NsiI ATGCAT 1 cut(s) 52
PceI AGGCCT 1 cut(s) 286
PdmI GAANNNNTTC 1 cut(s) 108
PkrI GCNGC 3 cut(s) 145, 430, 481
PleI GAGTC 1 cut(s) 472
PpsI GAGTC 1 cut(s) 472
Psp6I CCWGG 1 cut(s) 248
PspGI CCWGG 1 cut(s) 248
PspN4I GGNNCC 1 cut(s) 475
PsuI RGATCY 1 cut(s) 352
PvuII CAGCTG 1 cut(s) 461
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
RseI CAYNNNNRTG 1 cut(s) 64
SatI GCNGC 3 cut(s) 144, 429, 480
Sau3AI GATC 1 cut(s) 352
SchI GAGTC 1 cut(s) 473
ScrFI CCNGG 1 cut(s) 250
SetI ASST 4 cut(s) 14, 216, 403, 463
SmiMI CAYNNNNRTG 1 cut(s) 64
Sse9I AATT 2 cut(s) 410, 418
SseBI AGGCCT 1 cut(s) 286
SsiI CCGC 1 cut(s) 477
StuI AGGCCT 1 cut(s) 286
StyD4I CCNGG 1 cut(s) 248
TaaI ACNGT 2 cut(s) 154, 361
TaqI TCGA 2 cut(s) 440, 467
TasI AATT 2 cut(s) 410, 418
TseI GCWGC 3 cut(s) 143, 428, 479
TspDTI ATGAA 2 cut(s) 214, 318
XmnI GAANNNNTTC 1 cut(s) 108
Zsp2I ATGCAT 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.