Prupe.7G098200_v2.0.a1

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0010737
Physical Location & Seq
Reverse (-)
12951341 .. 12954907
3567 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G098200.1

Sequence Viewer

Length: 744 bp
ATGTTGGGAAGCTTGCTTACCAGATGCCTTATAATGTTTCTTGGGTATGCTTACCCTGCATTTGAATGTTATAAAATTGTGGAGAAGAACAGAGTTGAGATTGAAGAACTCCGGTTTTGGTGTCAATACTGGATAATTGTGGCCATGCTTACAGTTCTAGAGAGGATTGGAGACGTTTTCGTTTCATGGTTGCCCATGTATGGTGAGGCGAAGGTGGCCCTTTTTATCTACCTCTGGTATCCAAAGACCAGGGGAACTGGGTTTGTGTATCAGACACTGTTGAGGCCATATGTAGCAAAGCATGAAACTGACATAGACAGGAAACTGCTGGAGCTGAGAGCAAGGGCCTGGGATTTGGCGGTTTTCTACTGGCAAAACTGCGCCCAAATGGGCCATTCAGCTTTCTTCCAAACCCTTCAATACTTGGCTTCTCAGTCCTCAAAGTTCACCAAAACCCCCGCCGAAGAGCGGACGGTCGACGATGATCAGCAGAACCCACCGCCTTCAAACGCACCGCTTCGCAAGCCCAGTGGGAAGAACAAGTGGCCGCCGCCGTCATCTCCGCCAGGAACACCCAATGGCACAACCACAACCGCCAATGGCACAATCACAACCGTCAATCGTTTCATGTCCGAGACTCCGAGATCCCCCAAGGTGCAGGTTCAGGCCAAACATCAAACAGGCGGGCAGGTTGACGAGCTGTCCGAAAAGCTCAGGCTCAGGCGTTCCAAGCCAATCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

248

Amino Acids

28.39

Weight (kDa)

9.39

Isoelectric Point (pI)

45.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010737)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42560 AT5G42560 AT5G42560
fragaria_vesca FvH4_6g19930
malus_domestica MD12G1036900.v1.1 MD14G1034500.v1.1 MD14G1035900.v1.1
prunus_persica Prupe.7G098200_v2.0.a1
pyrus_communis pycom14g03170
rosa_chinensis RchiOBHm_Chr3g0475331
rosa_laevigata RLG00000023851
rosa_multiflora Rmu_co8097434.1_g000001 Rmu_ssc0000140.1_g000014
rosa_roxburghii Rroxscaffold_6G00406380
rosa_rugosa Rorug03G0148200
rosa_samantha Rh3AG198100 Rh3BG228300 Rh3CG222600 Rh3DG223500
rosa_wichuraiana Rw3G018000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 32, 72
Acc36I ACCTGC 2 cut(s) 649, 679
AccBSI CCGCTC 1 cut(s) 469
AccI GTMKAC 1 cut(s) 477
AclWI GGATC 1 cut(s) 639
AcoI YGGCCR 2 cut(s) 141, 545
AfiI CCNNNNNNNGG 2 cut(s) 200, 468
AgsI TTSAA 4 cut(s) 65, 104, 419, 507
AhdI GACNNNNNGTC 1 cut(s) 700
AjnI CCWGG 3 cut(s) 248, 347, 565
AluBI AGCT 5 cut(s) 12, 334, 401, 700, 712
AluI AGCT 5 cut(s) 12, 334, 401, 700, 712
Alw26I GTCTC 2 cut(s) 165, 629
AlwI GGATC 1 cut(s) 639
AlwNI CAGNNNCTG 1 cut(s) 277
AoxI GGCC 7 cut(s) 141, 216, 284, 345, 391, 545, 666
AspLEI GCGC 1 cut(s) 383
AspS9I GGNCC 3 cut(s) 217, 345, 391
AsuHPI GGTGA 2 cut(s) 215, 439
BalI TGGCCA 1 cut(s) 143
BarI GAAGNNNNNNTAC 1 cut(s) 33
BceAI ACGGC 1 cut(s) 538
BciT130I CCWGG 3 cut(s) 250, 349, 567
BciVI GTATCC 1 cut(s) 249
BclI TGATCA 1 cut(s) 484
BcoDI GTCTC 2 cut(s) 165, 629
BfaI CTAG 1 cut(s) 158
BfuAI ACCTGC 2 cut(s) 649, 679
BfuI GTATCC 1 cut(s) 249
BisI GCNGC 2 cut(s) 548, 551
BlsI GCNGC 2 cut(s) 549, 552
Bme1390I CCNGG 3 cut(s) 250, 349, 567
BmeRI GACNNNNNGTC 1 cut(s) 700
BmgT120I GGNCC 3 cut(s) 217, 345, 391
BmrFI CCNGG 3 cut(s) 250, 349, 567
BmrI ACTGGG 2 cut(s) 267, 522
BmsI GCATC 1 cut(s) 14
BmuI ACTGGG 2 cut(s) 267, 522
BpmI CTGGAG 1 cut(s) 350
Bpu10I CCTNAGC 2 cut(s) 713, 719
BsaJI CCNNGG 3 cut(s) 249, 348, 651
BsaWI WCCGGW 1 cut(s) 111
Bsc4I CCNNNNNNNGG 2 cut(s) 200, 468
Bse1I ACTGG 4 cut(s) 134, 262, 374, 528
BseBI CCWGG 3 cut(s) 250, 349, 567
BseDI CCNNGG 3 cut(s) 249, 348, 651
BseLI CCNNNNNNNGG 2 cut(s) 200, 468
BseMII CTCAG 4 cut(s) 326, 446, 727, 733
BseNI ACTGG 4 cut(s) 134, 262, 374, 528
BsgI GTGCAG 1 cut(s) 677
Bsh1285I CGRYCG 1 cut(s) 477
BshFI GGCC 7 cut(s) 143, 218, 286, 347, 393, 547, 668
BsiEI CGRYCG 1 cut(s) 477
BsiSI CCGG 1 cut(s) 112
BslI CCNNNNNNNGG 2 cut(s) 200, 468
BsmAI GTCTC 2 cut(s) 165, 629
BsmBI CGTCTC 1 cut(s) 165
BsnI GGCC 7 cut(s) 143, 218, 286, 347, 393, 547, 668
Bsp143I GATC 2 cut(s) 484, 644
BspANI GGCC 7 cut(s) 143, 218, 286, 347, 393, 547, 668
BspCNI CTCAG 4 cut(s) 327, 445, 726, 732
BspMI ACCTGC 2 cut(s) 649, 679
BspPI GGATC 1 cut(s) 639
BspQI GCTCTTC 1 cut(s) 459
BsrBI CCGCTC 1 cut(s) 469
BsrI ACTGG 4 cut(s) 134, 262, 374, 528
BssECI CCNNGG 3 cut(s) 249, 348, 651
BssMI GATC 2 cut(s) 484, 644
BssT1I CCWWGG 1 cut(s) 651
Bst2UI CCWGG 3 cut(s) 250, 349, 567
Bst4CI ACNGT 4 cut(s) 154, 279, 475, 616
Bst6I CTCTTC 1 cut(s) 459
BstC8I GCNNGC 3 cut(s) 14, 524, 686
BstDEI CTNAG 4 cut(s) 335, 432, 713, 719
BstHHI GCGC 1 cut(s) 383
BstKTI GATC 2 cut(s) 487, 647
BstMAI GTCTC 2 cut(s) 165, 629
BstMBI GATC 2 cut(s) 484, 644
BstMCI CGRYCG 1 cut(s) 477
BstMWI GCNNNNNNNGC 4 cut(s) 56, 215, 523, 730
BstNI CCWGG 3 cut(s) 250, 349, 567
BstSCI CCNGG 3 cut(s) 248, 347, 565
BstX2I RGATCY 1 cut(s) 644
BstYI RGATCY 1 cut(s) 644
BsuI GTATCC 1 cut(s) 249
BsuRI GGCC 7 cut(s) 143, 218, 286, 347, 393, 547, 668
BtsIMutI CAGTG 2 cut(s) 275, 535
BveI ACCTGC 2 cut(s) 649, 679
Cac8I GCNNGC 3 cut(s) 14, 524, 686
CaiI CAGNNNCTG 1 cut(s) 277
CfoI GCGC 1 cut(s) 383
Cfr13I GGNCC 3 cut(s) 217, 345, 391
CspCI CAANNNNNGTGG 2 cut(s) 511, 546
CviAII CATG 5 cut(s) 145, 186, 196, 302, 628
DdeI CTNAG 4 cut(s) 335, 432, 713, 719
DpnI GATC 2 cut(s) 486, 646
DpnII GATC 2 cut(s) 484, 644
DriI GACNNNNNGTC 1 cut(s) 700
EaeI YGGCCR 2 cut(s) 141, 545
Eam1104I CTCTTC 1 cut(s) 459
Eam1105I GACNNNNNGTC 1 cut(s) 700
EarI CTCTTC 1 cut(s) 459
EciI GGCGGA 1 cut(s) 552
Eco130I CCWWGG 1 cut(s) 651
EcoO109I RGGNCCY 1 cut(s) 345
EcoRII CCWGG 3 cut(s) 248, 347, 565
EcoT14I CCWWGG 1 cut(s) 651
ErhI CCWWGG 1 cut(s) 651
Esp3I CGTCTC 1 cut(s) 165
FaeI CATG 5 cut(s) 148, 189, 199, 305, 631
FatI CATG 5 cut(s) 144, 185, 195, 301, 627
FauI CCCGC 2 cut(s) 466, 677
FauNDI CATATG 1 cut(s) 289
FbaI TGATCA 1 cut(s) 484
FblI GTMKAC 1 cut(s) 477
Fnu4HI GCNGC 2 cut(s) 548, 551
Fsp4HI GCNGC 2 cut(s) 548, 551
FspBI CTAG 1 cut(s) 158
GlaI GCGC 1 cut(s) 382
GluI GCNGC 2 cut(s) 548, 551
GsuI CTGGAG 1 cut(s) 350
HaeIII GGCC 7 cut(s) 143, 218, 286, 347, 393, 547, 668
HapII CCGG 1 cut(s) 112
HhaI GCGC 1 cut(s) 383
Hin1II CATG 5 cut(s) 148, 189, 199, 305, 631
Hin6I GCGC 1 cut(s) 381
HinP1I GCGC 1 cut(s) 381
HincII GTYRAC 2 cut(s) 478, 694
HindII GTYRAC 2 cut(s) 478, 694
HindIII AAGCTT 1 cut(s) 10
HinfI GANTC 1 cut(s) 637
HpaII CCGG 1 cut(s) 112
HphI GGTGA 2 cut(s) 215, 439
Hpy166II GTNNAC 3 cut(s) 447, 478, 694
Hpy188I TCNGA 4 cut(s) 273, 634, 642, 706
Hpy188III TCNNGA 1 cut(s) 158
Hpy8I GTNNAC 3 cut(s) 447, 478, 694
Hpy99I CGWCG 1 cut(s) 482
HpyAV CCTTC 3 cut(s) 205, 425, 513
HpyCH4III ACNGT 4 cut(s) 154, 279, 475, 616
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 2 cut(s) 59, 658
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 215, 523, 730
HpyF3I CTNAG 4 cut(s) 335, 432, 713, 719
HpySE526I ACGT 1 cut(s) 174
Hsp92II CATG 5 cut(s) 148, 189, 199, 305, 631
HspAI GCGC 1 cut(s) 381
Ksp22I TGATCA 1 cut(s) 484
Kzo9I GATC 2 cut(s) 484, 644
LguI GCTCTTC 1 cut(s) 459
LmnI GCTCC 1 cut(s) 331
LweI GCATC 1 cut(s) 14
MaeI CTAG 1 cut(s) 158
MaeII ACGT 1 cut(s) 174
MalI GATC 2 cut(s) 486, 646
MbiI CCGCTC 1 cut(s) 469
MboI GATC 2 cut(s) 484, 644
MboII GAAGA 5 cut(s) 97, 116, 397, 476, 547
MflI RGATCY 1 cut(s) 644
MlsI TGGCCA 1 cut(s) 143
MluCI AATT 2 cut(s) 75, 135
MluNI TGGCCA 1 cut(s) 143
MlyI GAGTC 1 cut(s) 631
MnlI CCTC 5 cut(s) 156, 199, 242, 276, 448
Mox20I TGGCCA 1 cut(s) 143
MscI TGGCCA 1 cut(s) 143
MslI CAYNNNNRTG 1 cut(s) 64
Msp20I TGGCCA 1 cut(s) 143
MspI CCGG 1 cut(s) 112
MspR9I CCNGG 3 cut(s) 250, 349, 567
MvaI CCWGG 3 cut(s) 250, 349, 567
MwoI GCNNNNNNNGC 4 cut(s) 56, 215, 523, 730
NdeI CATATG 1 cut(s) 289
NdeII GATC 2 cut(s) 484, 644
NlaIII CATG 5 cut(s) 148, 189, 199, 305, 631
PciSI GCTCTTC 1 cut(s) 459
PcsI WCGNNNNNNNCGW 1 cut(s) 702
PkrI GCNGC 2 cut(s) 549, 552
PleI GAGTC 1 cut(s) 631
PpsI GAGTC 1 cut(s) 631
PsiI TTATAA 2 cut(s) 32, 72
Psp6I CCWGG 3 cut(s) 248, 347, 565
PspGI CCWGG 3 cut(s) 248, 347, 565
PspPI GGNCC 3 cut(s) 217, 345, 391
PstNI CAGNNNCTG 1 cut(s) 277
PsuI RGATCY 1 cut(s) 644
RseI CAYNNNNRTG 1 cut(s) 64
SalI GTCGAC 1 cut(s) 476
SapI GCTCTTC 1 cut(s) 459
SatI GCNGC 2 cut(s) 548, 551
Sau3AI GATC 2 cut(s) 484, 644
Sau96I GGNCC 3 cut(s) 217, 345, 391
SchI GAGTC 1 cut(s) 631
ScrFI CCNGG 3 cut(s) 250, 349, 567
SfaNI GCATC 1 cut(s) 14
SmiMI CAYNNNNRTG 1 cut(s) 64
Sse9I AATT 2 cut(s) 75, 135
SspMI CTAG 1 cut(s) 158
StyD4I CCNGG 3 cut(s) 248, 347, 565
StyI CCWWGG 1 cut(s) 651
TaaI ACNGT 4 cut(s) 154, 279, 475, 616
TaiI ACGT 1 cut(s) 177
TaqI TCGA 1 cut(s) 477
TasI AATT 2 cut(s) 75, 135
TauI GCSGC 2 cut(s) 550, 553
TscAI CASTG 2 cut(s) 282, 535
TspDTI ATGAA 3 cut(s) 174, 318, 616
TspRI CASTG 2 cut(s) 282, 535
XbaI TCTAGA 1 cut(s) 157
XmiI GTMKAC 1 cut(s) 477
XspI CTAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.