MD14G1034500.v1.1

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0010737
Physical Location & Seq
Reverse (-)
3057956 .. 3060060
2105 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1034500.v1.1.491

Sequence Viewer

Length: 438 bp
ATGTTGGGAAGCTTGCTAACCAGAATTCTTATAGTGTTTCTTGGGTATGCATACCCAGCATTTGAGTGCTACAAAACAGTGGAGAAGAACAGAGTTGAGATTCAAGAACTCCGGCTTTGGTGTCAATACTGGATAATTGTGGCAATGCTCACAGTTCTTGAGAGGGTTGGAGATGTATTCATCTCATGGTTGCCCATGTATGATGAAGGGAAGGTGGCCCTTTTTATATACCTATGGTGTTCAAAGACCAAGGAAACTTTCTTTGTGTACAAGACCTTCCTGAGGCCATATGTAGCAAAGTATGAGACAGACATAGACAGGAAGGTGCTGGAGATGCGAGCAAGAGCCTGGGATTTGACGGTACTCTACTGGCAGAACTTCGCCGAATATGGCCACGCTGCTTTTCTCCAGGCCCTTCGGTACATGACTGCTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

146

Amino Acids

17.38

Weight (kDa)

8.38

Isoelectric Point (pI)

30.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 19 - 97 7.3e-22 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010737)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42560 AT5G42560 AT5G42560
fragaria_vesca FvH4_6g19930
malus_domestica MD12G1036900.v1.1 MD14G1034500.v1.1 MD14G1035900.v1.1
prunus_persica Prupe.7G098200_v2.0.a1
pyrus_communis pycom14g03170
rosa_chinensis RchiOBHm_Chr3g0475331
rosa_laevigata RLG00000023851
rosa_multiflora Rmu_co8097434.1_g000001 Rmu_ssc0000140.1_g000014
rosa_roxburghii Rroxscaffold_6G00406380
rosa_rugosa Rorug03G0148200
rosa_samantha Rh3AG198100 Rh3BG228300 Rh3CG222600 Rh3DG223500
rosa_wichuraiana Rw3G018000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 391
AcsI RAATTY 1 cut(s) 24
AfaI GTAC 3 cut(s) 269, 363, 422
AfiI CCNNNNNNNGG 1 cut(s) 282
AgsI TTSAA 2 cut(s) 104, 243
AjnI CCWGG 2 cut(s) 347, 408
AjuI GAANNNNNNNTTGG 2 cut(s) 242, 274
AluBI AGCT 2 cut(s) 12, 435
AluI AGCT 2 cut(s) 12, 435
Alw26I GTCTC 1 cut(s) 299
AoxI GGCC 4 cut(s) 216, 284, 391, 411
ApeKI GCWGC 1 cut(s) 398
ApoI RAATTY 1 cut(s) 24
AspS9I GGNCC 2 cut(s) 217, 412
AsuNHI GCTAGC 1 cut(s) 431
AxyI CCTNAGG 1 cut(s) 281
BalI TGGCCA 1 cut(s) 393
BarI GAAGNNNNNNTAC 2 cut(s) 260, 292
BbvI GCAGC 1 cut(s) 385
BciT130I CCWGG 2 cut(s) 349, 410
BcoDI GTCTC 1 cut(s) 299
BfaI CTAG 1 cut(s) 432
BisI GCNGC 1 cut(s) 399
BlsI GCNGC 1 cut(s) 400
Bme1390I CCNGG 2 cut(s) 349, 410
BmgT120I GGNCC 2 cut(s) 217, 412
BmrFI CCNGG 2 cut(s) 349, 410
BmsI GCATC 1 cut(s) 324
BmtI GCTAGC 1 cut(s) 435
BpmI CTGGAG 2 cut(s) 350, 392
BpuEI CTTGAG 1 cut(s) 179
BsaJI CCNNGG 2 cut(s) 249, 348
Bsc4I CCNNNNNNNGG 1 cut(s) 282
Bse1I ACTGG 2 cut(s) 134, 374
Bse21I CCTNAGG 1 cut(s) 281
Bse3DI GCAATG 1 cut(s) 150
BseBI CCWGG 2 cut(s) 349, 410
BseDI CCNNGG 2 cut(s) 249, 348
BseLI CCNNNNNNNGG 1 cut(s) 282
BseMI GCAATG 1 cut(s) 150
BseMII CTCAG 1 cut(s) 272
BseNI ACTGG 2 cut(s) 134, 374
BseXI GCAGC 1 cut(s) 385
BseYI CCCAGC 1 cut(s) 55
BshFI GGCC 4 cut(s) 218, 286, 393, 413
BsiSI CCGG 1 cut(s) 112
BslI CCNNNNNNNGG 1 cut(s) 282
BsmAI GTCTC 1 cut(s) 299
BsnI GGCC 4 cut(s) 218, 286, 393, 413
Bsp1407I TGTACA 1 cut(s) 267
BspANI GGCC 4 cut(s) 218, 286, 393, 413
BspCNI CTCAG 1 cut(s) 273
BspOI GCTAGC 1 cut(s) 435
BsrDI GCAATG 1 cut(s) 150
BsrGI TGTACA 1 cut(s) 267
BsrI ACTGG 2 cut(s) 134, 374
BssECI CCNNGG 2 cut(s) 249, 348
BssT1I CCWWGG 1 cut(s) 249
Bst2UI CCWGG 2 cut(s) 349, 410
Bst4CI ACNGT 3 cut(s) 79, 154, 361
BstAUI TGTACA 1 cut(s) 267
BstC8I GCNNGC 3 cut(s) 14, 339, 433
BstDEI CTNAG 1 cut(s) 281
BstENI CCTNNNNNAGG 1 cut(s) 280
BstMAI GTCTC 1 cut(s) 299
BstMWI GCNNNNNNNGC 2 cut(s) 56, 334
BstNI CCWGG 2 cut(s) 349, 410
BstSCI CCNGG 2 cut(s) 347, 408
BstV1I GCAGC 1 cut(s) 385
Bsu36I CCTNAGG 1 cut(s) 281
BsuRI GGCC 4 cut(s) 218, 286, 393, 413
BtsIMutI CAGTG 1 cut(s) 84
Cac8I GCNNGC 3 cut(s) 14, 339, 433
Cfr13I GGNCC 2 cut(s) 217, 412
Csp6I GTAC 3 cut(s) 268, 362, 421
CviAII CATG 3 cut(s) 186, 196, 424
CviJI RGCY 8 cut(s) 12, 115, 218, 286, 347, 393, 413, 435
CviKI_1 RGCY 8 cut(s) 12, 115, 218, 286, 347, 393, 413, 435
CviQI GTAC 3 cut(s) 268, 362, 421
DdeI CTNAG 1 cut(s) 281
EaeI YGGCCR 1 cut(s) 391
Eco130I CCWWGG 1 cut(s) 249
Eco81I CCTNAGG 1 cut(s) 281
EcoNI CCTNNNNNAGG 1 cut(s) 280
EcoO109I RGGNCCY 1 cut(s) 412
EcoRI GAATTC 1 cut(s) 24
EcoRII CCWGG 2 cut(s) 347, 408
EcoT14I CCWWGG 1 cut(s) 249
EcoT22I ATGCAT 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 249
FaeI CATG 3 cut(s) 189, 199, 427
FatI CATG 3 cut(s) 185, 195, 423
FauNDI CATATG 1 cut(s) 289
Fnu4HI GCNGC 1 cut(s) 399
Fsp4HI GCNGC 1 cut(s) 399
FspBI CTAG 1 cut(s) 432
GluI GCNGC 1 cut(s) 399
GsaI CCCAGC 1 cut(s) 59
GsuI CTGGAG 2 cut(s) 350, 392
HaeIII GGCC 4 cut(s) 218, 286, 393, 413
HapII CCGG 1 cut(s) 112
Hin1II CATG 3 cut(s) 189, 199, 427
HindIII AAGCTT 1 cut(s) 10
HinfI GANTC 1 cut(s) 100
HpaII CCGG 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 268
Hpy188III TCNNGA 3 cut(s) 104, 158, 280
Hpy8I GTNNAC 1 cut(s) 268
HpyAV CCTTC 5 cut(s) 200, 205, 286, 316, 425
HpyCH4III ACNGT 3 cut(s) 79, 154, 361
HpyCH4V TGCA 1 cut(s) 50
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 334
HpyF3I CTNAG 1 cut(s) 281
Hsp92II CATG 3 cut(s) 189, 199, 427
Lsp1109I GCAGC 1 cut(s) 385
LweI GCATC 1 cut(s) 324
MaeI CTAG 1 cut(s) 432
MboII GAAGA 1 cut(s) 97
MlsI TGGCCA 1 cut(s) 393
MluCI AATT 2 cut(s) 24, 135
MluNI TGGCCA 1 cut(s) 393
MmeI TCCRAC 1 cut(s) 148
MnlI CCTC 2 cut(s) 156, 276
Mox20I TGGCCA 1 cut(s) 393
Mph1103I ATGCAT 1 cut(s) 52
MscI TGGCCA 1 cut(s) 393
MslI CAYNNNNRTG 1 cut(s) 64
Msp20I TGGCCA 1 cut(s) 393
MspI CCGG 1 cut(s) 112
MspR9I CCNGG 2 cut(s) 349, 410
MvaI CCWGG 2 cut(s) 349, 410
MwoI GCNNNNNNNGC 2 cut(s) 56, 334
NdeI CATATG 1 cut(s) 289
NheI GCTAGC 1 cut(s) 431
NlaIII CATG 3 cut(s) 189, 199, 427
NsiI ATGCAT 1 cut(s) 52
PfeI GAWTC 1 cut(s) 100
PkrI GCNGC 1 cut(s) 400
Psp6I CCWGG 2 cut(s) 347, 408
PspFI CCCAGC 1 cut(s) 55
PspGI CCWGG 2 cut(s) 347, 408
PspPI GGNCC 2 cut(s) 217, 412
RsaI GTAC 3 cut(s) 269, 363, 422
RsaNI GTAC 3 cut(s) 268, 362, 421
RseI CAYNNNNRTG 1 cut(s) 64
SatI GCNGC 1 cut(s) 399
Sau96I GGNCC 2 cut(s) 217, 412
ScrFI CCNGG 2 cut(s) 349, 410
SetI ASST 6 cut(s) 14, 216, 234, 278, 327, 437
SfaNI GCATC 1 cut(s) 324
SmiMI CAYNNNNRTG 1 cut(s) 64
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 2 cut(s) 24, 135
SspMI CTAG 1 cut(s) 432
StyD4I CCNGG 2 cut(s) 347, 408
StyI CCWWGG 1 cut(s) 249
TaaI ACNGT 3 cut(s) 79, 154, 361
TasI AATT 2 cut(s) 24, 135
TatI WGTACW 1 cut(s) 267
TfiI GAWTC 1 cut(s) 100
TscAI CASTG 1 cut(s) 84
TseI GCWGC 1 cut(s) 398
TspDTI ATGAA 2 cut(s) 169, 219
TspRI CASTG 1 cut(s) 84
XagI CCTNNNNNAGG 1 cut(s) 280
XapI RAATTY 1 cut(s) 24
XspI CTAG 1 cut(s) 432
Zsp2I ATGCAT 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.