AT5G43066

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015049
Physical Location & Seq
Forward (+)
17284583 .. 17284807
225 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G43066.1

Sequence Viewer

Length: 225 bp
ATGGAGAAAAAGAATATGTTCGTGCTGTGTATGATCTTGTTATTGGTGGGCTCGTCGTTGATGTTTGAGAGAGTTGATTGCAGAGTCGTACGATCGGAGCCTTTCAGAGATATCAACGGCCATGATCAATCAACGGCGACCAAGGTGAAGAGAAGCTCGTGCAGTCGACGTCCTTTGATGAGGATTCTAGCGTCTGGACCGAACAAAAGAGGACGTGGTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

8.45

Weight (kDa)

10.85

Isoelectric Point (pI)

69.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015049)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47130 AT5G43064 AT5G43066 AT5G43068
fragaria_vesca FvH4_2g33680
prunus_persica Prupe.1G429100_v2.0.a1
pyrus_communis pycom08g07400 pycom15g07090
rosa_laevigata RLG00000010610
rosa_multiflora Rmu_sc0004046.1_g000013
rosa_roxburghii Rroxscaffold_7G00159830
rosa_rugosa Rorug06G0368900
rosa_samantha Rh6AG480400 Rh6CG495300 Rh6DG480700
rosa_wichuraiana Rw6G041870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 172
AccI GTMKAC 1 cut(s) 166
AcoI YGGCCR 1 cut(s) 118
AcyI GRCGYC 1 cut(s) 169
AfaI GTAC 1 cut(s) 90
AjiI CACGTC 1 cut(s) 215
AluBI AGCT 1 cut(s) 156
AluI AGCT 1 cut(s) 156
AoxI GGCC 1 cut(s) 118
Asp700I GAANNNNTTC 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 197
AsuHPI GGTGA 1 cut(s) 157
AvaII GGWCC 1 cut(s) 197
BanII GRGCYC 1 cut(s) 53
BauI CACGAG 1 cut(s) 157
BceAI ACGGC 2 cut(s) 133, 150
BclI TGATCA 1 cut(s) 124
BfaI CTAG 1 cut(s) 188
Bme18I GGWCC 1 cut(s) 197
BmgBI CACGTC 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 1 cut(s) 99
BsaHI GRCGYC 1 cut(s) 169
BsaJI CCNNGG 1 cut(s) 141
BseDI CCNNGG 1 cut(s) 141
BsgI GTGCAG 1 cut(s) 181
Bsh1285I CGRYCG 1 cut(s) 95
BshFI GGCC 1 cut(s) 120
BsiEI CGRYCG 1 cut(s) 95
BsiWI CGTACG 1 cut(s) 88
BsnI GGCC 1 cut(s) 120
Bsp1286I GDGCHC 1 cut(s) 53
Bsp143I GATC 3 cut(s) 33, 92, 124
BspANI GGCC 1 cut(s) 120
BspLI GGNNCC 1 cut(s) 99
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 3 cut(s) 33, 92, 124
BssNI GRCGYC 1 cut(s) 169
BssSI CACGAG 1 cut(s) 157
BssT1I CCWWGG 1 cut(s) 141
Bst2BI CACGAG 1 cut(s) 157
Bst6I CTCTTC 1 cut(s) 143
BstACI GRCGYC 1 cut(s) 169
BstKTI GATC 3 cut(s) 36, 95, 127
BstMBI GATC 3 cut(s) 33, 92, 124
BstMCI CGRYCG 1 cut(s) 95
BsuRI GGCC 1 cut(s) 120
BtrI CACGTC 1 cut(s) 215
BtsIMutI CAGTG 1 cut(s) 220
Cfr13I GGNCC 1 cut(s) 197
CseI GACGC 1 cut(s) 180
Csp6I GTAC 1 cut(s) 89
CviAII CATG 1 cut(s) 122
CviJI RGCY 4 cut(s) 51, 100, 120, 156
CviKI_1 RGCY 4 cut(s) 51, 100, 120, 156
CviQI GTAC 1 cut(s) 89
DpnI GATC 3 cut(s) 35, 94, 126
DpnII GATC 3 cut(s) 33, 92, 124
EaeI YGGCCR 1 cut(s) 118
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
Eco130I CCWWGG 1 cut(s) 141
Eco24I GRGCYC 1 cut(s) 53
Eco32I GATATC 1 cut(s) 112
Eco47I GGWCC 1 cut(s) 197
EcoRV GATATC 1 cut(s) 112
EcoT14I CCWWGG 1 cut(s) 141
EcoT38I GRGCYC 1 cut(s) 53
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 1 cut(s) 125
FaiI YATR 3 cut(s) 17, 32, 123
FatI CATG 1 cut(s) 121
FbaI TGATCA 1 cut(s) 124
FblI GTMKAC 1 cut(s) 166
FriOI GRGCYC 1 cut(s) 53
FspBI CTAG 1 cut(s) 188
HaeIII GGCC 1 cut(s) 120
HgaI GACGC 1 cut(s) 180
Hin1I GRCGYC 1 cut(s) 169
Hin1II CATG 1 cut(s) 125
HincII GTYRAC 1 cut(s) 167
HindII GTYRAC 1 cut(s) 167
HinfI GANTC 2 cut(s) 84, 184
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 1 cut(s) 167
Hpy188I TCNGA 2 cut(s) 97, 107
Hpy188III TCNNGA 1 cut(s) 195
Hpy8I GTNNAC 1 cut(s) 167
Hpy99I CGWCG 2 cut(s) 58, 171
HpyCH4IV ACGT 2 cut(s) 169, 214
HpyCH4V TGCA 2 cut(s) 81, 162
HpySE526I ACGT 2 cut(s) 169, 214
Hsp92I GRCGYC 1 cut(s) 169
Hsp92II CATG 1 cut(s) 125
Ksp22I TGATCA 1 cut(s) 124
Kzo9I GATC 3 cut(s) 33, 92, 124
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 1 cut(s) 180
MaeI CTAG 1 cut(s) 188
MaeII ACGT 2 cut(s) 169, 214
MaeIII GTNAC 1 cut(s) 218
MalI GATC 3 cut(s) 35, 94, 126
MboI GATC 3 cut(s) 33, 92, 124
MboII GAAGA 1 cut(s) 160
MhlI GDGCHC 1 cut(s) 53
MlyI GAGTC 1 cut(s) 93
MnlI CCTC 2 cut(s) 174, 203
MroXI GAANNNNTTC 1 cut(s) 17
NdeII GATC 3 cut(s) 33, 92, 124
NlaIII CATG 1 cut(s) 125
NlaIV GGNNCC 1 cut(s) 99
NmuCI GTSAC 1 cut(s) 218
PdmI GAANNNNTTC 1 cut(s) 17
PfeI GAWTC 1 cut(s) 184
Pfl23II CGTACG 1 cut(s) 88
PflFI GACNNNGTC 1 cut(s) 216
Ple19I CGATCG 1 cut(s) 95
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
PspLI CGTACG 1 cut(s) 88
PspN4I GGNNCC 1 cut(s) 99
PspPI GGNCC 1 cut(s) 197
PsyI GACNNNGTC 1 cut(s) 216
PvuI CGATCG 1 cut(s) 95
RsaI GTAC 1 cut(s) 90
RsaNI GTAC 1 cut(s) 89
SalI GTCGAC 1 cut(s) 165
Sau3AI GATC 3 cut(s) 33, 92, 124
Sau96I GGNCC 1 cut(s) 197
SchI GAGTC 1 cut(s) 93
SduI GDGCHC 1 cut(s) 53
SetI ASST 4 cut(s) 147, 158, 172, 217
SgeI CNNG 9 cut(s) 34, 49, 64, 134, 154, 169, 171, 200, 207
SinI GGWCC 1 cut(s) 197
SspMI CTAG 1 cut(s) 188
StyI CCWWGG 1 cut(s) 141
TaiI ACGT 2 cut(s) 172, 217
TaqI TCGA 1 cut(s) 166
TaqII GACCGA 1 cut(s) 214
TfiI GAWTC 1 cut(s) 184
TseFI GTSAC 1 cut(s) 218
Tsp45I GTSAC 1 cut(s) 218
Tth111I GACNNNGTC 1 cut(s) 216
VpaK11BI GGWCC 1 cut(s) 197
XmiI GTMKAC 1 cut(s) 166
XmnI GAANNNNTTC 1 cut(s) 17
XspI CTAG 1 cut(s) 188
ZraI GACGTC 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.